Rroxscaffold_1G00042570

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002054
Physical Location & Seq
Forward (+)
60884722 .. 60885912
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042570.1

Sequence Viewer

Length: 969 bp
ATGGTTCTTACTTCTTACTACCTAGCTGATAAACTGTGCTTTTATGATAAAACTACGGACCAGAATTCGCAGTCTTATGTTGAATGCTTGTGTTGTGCTGAGTTGGTTGGAGTAGAAGATTGTAAGGAGAAGTATTTGCCGCACAAGGTGGCAATGCAGTTTGGAATTGATCAAGACCTTCCTGGGGATCCTGCTGCATGCTCAGGGTTGGATGGTAACTCGAACACTACCGATGTTCGTTTCTTTCTTCCAGGACGGTTTTTTGAGCCGAGTGAGAAGAGTCATCATCACTCCGTGGAAGAGAAGAATTTGAAGGCGCATAAGGCATCTACAAAAGCTTTATCAAAGTGTGAAATTGAAAAGAACCACTTCTGTGCTGTGCCTGAAGTCTCCAGAAAACCCAATTGTGTTGTCAGGACACAACCATCAGCCACTGCTCAATTTCCCAAGAACGTCGAGAAAGACTTGTCTCCAAATCATAGTGGTGGTGGCAATATTCCTCTGTTGAAGCAGAGGGGACTTGTGGAAAAGAGACTGACTTGTCTCCGTAATGCTTCTACAACCAGGAAATCCACAAACATTGTTTCGTCACAGTCACGTAACCCAAATAAAAATGTGAAGAAACGGAAGCTGGCCGCACCAACTGAAGAGTTTCCTTCTAAGAAAAGAAATATTAGTTCTGCAAAAGGAGGGAAGAAAGCAATGGCTGAAGGGTCTCTGAAGAAACCCATGGAGGCTGATGGCCGTAAAGTGAAACAATCTGAAAGGTGTGCTGCAAAAGTTAGGAAGAAAGCAATGTCTGAAAGGTCTCTGAAGAAACCCATGGAGGCTGATGGACATAAAGTGAAACAATCCAAAAGGGGTGCTGTGAAAGAAGTCAAGAGAACGATGGAGAATGCTAGAACTAAAACTCAGAAAGATGGATTACTGATGAGGGTTCAGAAACTGGAGAAACTTTTGGGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

322

Amino Acids

35.85

Weight (kDa)

9.74

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 17 - 64 4.2e-10 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 540
AciI CCGC 2 cut(s) 140, 636
AclWI GGATC 2 cut(s) 182, 195
AcoI YGGCCR 2 cut(s) 633, 742
AcsI RAATTY 2 cut(s) 64, 307
AcuI CTGAAG 5 cut(s) 405, 666, 729, 740, 833
AdeI CACNNNGTG 2 cut(s) 148, 295
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 4 cut(s) 83, 313, 359, 508
AjnI CCWGG 3 cut(s) 181, 250, 563
AleI CACNNNNGTG 1 cut(s) 372
AluBI AGCT 3 cut(s) 26, 338, 631
AluI AGCT 3 cut(s) 26, 338, 631
Alw26I GTCTC 6 cut(s) 394, 474, 526, 548, 720, 813
AlwI GGATC 2 cut(s) 182, 195
AlwNI CAGNNNCTG 2 cut(s) 434, 946
AoxI GGCC 2 cut(s) 633, 742
ApeKI GCWGC 2 cut(s) 194, 773
ApoI RAATTY 2 cut(s) 64, 307
Asp700I GAANNNNTTC 2 cut(s) 368, 651
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 58
AvaII GGWCC 1 cut(s) 58
BamHI GGATCC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 181, 760
BccI CCATC 6 cut(s) 206, 433, 734, 827, 883, 914
BceAI ACGGC 1 cut(s) 729
BciT130I CCWGG 3 cut(s) 183, 252, 565
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 6 cut(s) 394, 474, 526, 548, 720, 813
BfaI CTAG 2 cut(s) 23, 900
BisI GCNGC 4 cut(s) 140, 195, 636, 774
BlsI GCNGC 4 cut(s) 141, 196, 637, 775
Bme1390I CCNGG 3 cut(s) 183, 252, 565
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 3 cut(s) 183, 252, 565
BmsI GCATC 1 cut(s) 335
BpmI CTGGAG 2 cut(s) 376, 968
Bpu10I CCTNAGC 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 599
BsaI GGTCTC 2 cut(s) 720, 813
BsaJI CCNNGG 4 cut(s) 182, 294, 729, 822
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 951
Bse3DI GCAATG 3 cut(s) 159, 708, 801
BseBI CCWGG 3 cut(s) 183, 252, 565
BseDI CCNNGG 4 cut(s) 182, 294, 729, 822
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMI GCAATG 3 cut(s) 159, 708, 801
BseMII CTCAG 3 cut(s) 90, 216, 926
BseNI ACTGG 1 cut(s) 951
BseXI GCAGC 2 cut(s) 181, 760
BshFI GGCC 2 cut(s) 635, 744
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 6 cut(s) 394, 474, 526, 548, 720, 813
BsmFI GGGAC 1 cut(s) 531
BsmI GAATGC 2 cut(s) 89, 901
BsnI GGCC 2 cut(s) 635, 744
Bso31I GGTCTC 2 cut(s) 720, 813
Bsp143I GATC 2 cut(s) 169, 187
Bsp19I CCATGG 2 cut(s) 729, 822
BspACI CCGC 2 cut(s) 140, 636
BspANI GGCC 2 cut(s) 635, 744
BspCNI CTCAG 3 cut(s) 91, 215, 925
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 2 cut(s) 182, 195
BspTNI GGTCTC 2 cut(s) 720, 813
BsrDI GCAATG 3 cut(s) 159, 708, 801
BsrI ACTGG 1 cut(s) 951
BssECI CCNNGG 4 cut(s) 182, 294, 729, 822
BssMI GATC 2 cut(s) 169, 187
BssT1I CCWWGG 2 cut(s) 729, 822
Bst2UI CCWGG 3 cut(s) 183, 252, 565
Bst4CI ACNGT 3 cut(s) 36, 258, 594
Bst6I CTCTTC 3 cut(s) 272, 294, 642
BstBAI YACGTR 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 199, 633
BstDEI CTNAG 4 cut(s) 99, 202, 660, 912
BstDSI CCRYGG 3 cut(s) 294, 729, 822
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 172, 190
BstMAI GTCTC 6 cut(s) 394, 474, 526, 548, 720, 813
BstMBI GATC 2 cut(s) 169, 187
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 3 cut(s) 183, 252, 565
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 3 cut(s) 181, 250, 563
BstV1I GCAGC 2 cut(s) 181, 760
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 2 cut(s) 635, 744
BtgI CCRYGG 3 cut(s) 294, 729, 822
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 199, 633
CaiI CAGNNNCTG 2 cut(s) 434, 946
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 58
CspCI CAANNNNNGTGG 2 cut(s) 562, 597
CviAII CATG 3 cut(s) 198, 730, 823
DdeI CTNAG 4 cut(s) 99, 202, 660, 912
DpnI GATC 2 cut(s) 171, 189
DpnII GATC 2 cut(s) 169, 187
DraIII CACNNNGTG 2 cut(s) 148, 295
DrdI GACNNNNNNGTC 1 cut(s) 540
DseDI GACNNNNNNGTC 1 cut(s) 540
EaeI YGGCCR 2 cut(s) 633, 742
Eam1104I CTCTTC 3 cut(s) 272, 294, 642
EarI CTCTTC 3 cut(s) 272, 294, 642
Eco130I CCWWGG 2 cut(s) 729, 822
Eco31I GGTCTC 2 cut(s) 720, 813
Eco47I GGWCC 1 cut(s) 58
Eco57I CTGAAG 5 cut(s) 405, 666, 729, 740, 833
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 3 cut(s) 181, 250, 563
EcoT14I CCWWGG 2 cut(s) 729, 822
ErhI CCWWGG 2 cut(s) 729, 822
FaeI CATG 3 cut(s) 201, 733, 826
FaiI YATR 9 cut(s) 45, 78, 199, 321, 480, 731, 824, 840, 967
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 1 cut(s) 531
FatI CATG 3 cut(s) 197, 729, 822
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 4 cut(s) 140, 195, 636, 774
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 4 cut(s) 140, 195, 636, 774
FspBI CTAG 2 cut(s) 23, 900
GlaI GCGC 1 cut(s) 318
GluI GCNGC 4 cut(s) 140, 195, 636, 774
GsuI CTGGAG 2 cut(s) 376, 968
HaeIII GGCC 2 cut(s) 635, 744
HhaI GCGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 201, 733, 826
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 1 cut(s) 280
Hpy188I TCNGA 6 cut(s) 720, 763, 802, 813, 915, 942
Hpy188III TCNNGA 5 cut(s) 173, 393, 415, 457, 880
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 4 cut(s) 188, 307, 666, 704
HpyCH4III ACNGT 3 cut(s) 36, 258, 594
HpyCH4IV ACGT 2 cut(s) 453, 598
HpyCH4V TGCA 4 cut(s) 157, 197, 683, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 4 cut(s) 99, 202, 660, 912
HpySE526I ACGT 2 cut(s) 453, 598
Hsp92II CATG 3 cut(s) 201, 733, 826
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 169, 187
Lsp1109I GCAGC 2 cut(s) 181, 760
LweI GCATC 1 cut(s) 335
MaeI CTAG 2 cut(s) 23, 900
MaeII ACGT 2 cut(s) 453, 598
MaeIII GTNAC 4 cut(s) 215, 588, 594, 599
MalI GATC 2 cut(s) 171, 189
MboI GATC 2 cut(s) 169, 187
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 1 cut(s) 187
MluCI AATT 6 cut(s) 64, 165, 307, 354, 403, 440
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 2 cut(s) 88, 189
MnlI CCTC 6 cut(s) 507, 510, 683, 727, 820, 927
MroXI GAANNNNTTC 2 cut(s) 368, 651
MslI CAYNNNNRTG 2 cut(s) 372, 483
MspR9I CCNGG 3 cut(s) 183, 252, 565
MunI CAATTG 1 cut(s) 403
Mva1269I GAATGC 2 cut(s) 89, 901
MvaI CCWGG 3 cut(s) 183, 252, 565
MwoI GCNNNNNNNGC 1 cut(s) 323
NcoI CCATGG 2 cut(s) 729, 822
NdeII GATC 2 cut(s) 169, 187
NlaIII CATG 3 cut(s) 201, 733, 826
NlaIV GGNNCC 1 cut(s) 189
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 2 cut(s) 588, 594
NspI RCATGY 1 cut(s) 201
OliI CACNNNNGTG 1 cut(s) 372
PaeI GCATGC 1 cut(s) 201
PctI GAATGC 2 cut(s) 89, 901
PdmI GAANNNNTTC 2 cut(s) 368, 651
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 4 cut(s) 141, 196, 637, 775
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 599
Psp6I CCWGG 3 cut(s) 181, 250, 563
PspGI CCWGG 3 cut(s) 181, 250, 563
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 58
PstNI CAGNNNCTG 2 cut(s) 434, 946
PsuI RGATCY 1 cut(s) 187
RseI CAYNNNNRTG 2 cut(s) 372, 483
SatI GCNGC 4 cut(s) 140, 195, 636, 774
Sau3AI GATC 2 cut(s) 169, 187
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 3 cut(s) 183, 252, 565
SfaNI GCATC 1 cut(s) 335
SinI GGWCC 1 cut(s) 58
SmiMI CAYNNNNRTG 2 cut(s) 372, 483
SphI GCATGC 1 cut(s) 201
Sse9I AATT 6 cut(s) 64, 165, 307, 354, 403, 440
SsiI CCGC 2 cut(s) 140, 636
SspI AATATT 2 cut(s) 496, 673
SspMI CTAG 2 cut(s) 23, 900
StyD4I CCNGG 3 cut(s) 181, 250, 563
StyI CCWWGG 2 cut(s) 729, 822
TaaI ACNGT 3 cut(s) 36, 258, 594
TaiI ACGT 2 cut(s) 456, 601
TaqI TCGA 2 cut(s) 221, 456
TasI AATT 6 cut(s) 64, 165, 307, 354, 403, 440
TauI GCSGC 2 cut(s) 142, 638
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 2 cut(s) 588, 594
TseI GCWGC 2 cut(s) 194, 773
Tsp45I GTSAC 2 cut(s) 588, 594
TspGWI ACGGA 4 cut(s) 71, 283, 536, 640
TspRI CASTG 1 cut(s) 439
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 2 cut(s) 64, 307
XceI RCATGY 1 cut(s) 201
XmnI GAANNNNTTC 2 cut(s) 368, 651
XspI CTAG 2 cut(s) 23, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.