Rmu_sc0009149.1_g000008

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009149.1
Physical Location & Seq
Reverse (-)
28359 .. 29957
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009149.1_g000008.1.cds

Sequence Viewer

Length: 1599 bp
atgagctcgaagtatgagactaactttaacaaggatttggtgctggttttggccgagttttggtgctcggagactaatacattcgtgtttgattggggcgaagcgacgatcacaatggaggatgtgatgattcttggtgggttttcggttctgggtaagcaggtgacgaggcccattaatggggtgttggtggaaacagtggaggagatggagaagaagaagacggagctgacgagaactccggcgaagaaagcttatcactttaactggatgacccattttatgaagcttcaggactacaagcatgaacatgtggcattcctgtctctgtggttggcaaggtttgtatttccttctcttcctgaagaaagcttaggcaaacatgtgtttcccattgcggttcttttgtcacagggcactagagttgctctggctcctgcagttcttgcagggcttttcagagatttaagctttttgaaaaaccaagcctttaagggtgaggagataatctctgtttcgagcccatttcagctgttgcagttgtgggcgttggagaggtttcagggtgtgcttaatagtccaccaaagagacttaacccctgtgagcctagggcggctcggtggaacaaagtgaacattaagattagtctccctgatgtgaggagagagattaatttggctaagaatttttggtggcggccttatgctgctgaactgaccaattggcgacatggttcttactacctagctgataaactgtgcttttatgataaaactacggaccagaatttgcagtcttatgttgaatgcttgtgttgtgctgagttggttggagtagaagattgtaaggagaagtatttgccgcacagggtggcaatgcagtttggaattgatcaagaccttcctggggatcctactgcatgctcagggttggatggtaactcggacactaccaatgttcgtttctttcttccaggatggttttttgagccgtgtgtaactgctagatactcatattggtggggactatataagtctgctcgtgcagatgcaatcaaagatggtgtcaaagtggctgtaaaaaagattaaggagaagagtcatcatcactccgtggaagagaagaatttcaaggcgcataaggcatctacaaaagctttatcaaagtgtgaacttgaaaagaaccacttctgtgctgtgcctgaagtctcaagaaaatccaattgtgctgtcaggacacaaccatcagccactgctcaatttcccaacaaggtcaagaaagatttgttctcaaatcatagtggttgtggcgatattcctctgttgaaacaaaggggacttgtggaaaagagaccggcttgtctccataatgcttccacaaccgtgaaatccacaaacgttgtttcctcacagtcacgtaacccaaatgaaaatgtgaagaaaaggaagctggccgcaccaactgaagagttccctgctaagaaaagaaatattagtgagtataacaaaaatcttttgatggttgctacaaaagggaagaagggtagtgatattgaaacaaaggggagttgtggaaaagagaccggcttgtctccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

532

Amino Acids

60.2

Weight (kDa)

9.2

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 151
AasI GACNNNNNNGTC 2 cut(s) 1359, 1588
Acc36I ACCTGC 1 cut(s) 151
AciI CCGC 5 cut(s) 398, 614, 697, 863, 1455
AclI AACGTT 1 cut(s) 1398
AclWI GGATC 2 cut(s) 905, 918
AcoI YGGCCR 2 cut(s) 51, 1452
AcsI RAATTY 3 cut(s) 685, 787, 1126
AcuI CTGAAG 4 cut(s) 275, 384, 1224, 1485
AdeI CACNNNGTG 2 cut(s) 871, 1114
AfiI CCNNNNNNNGG 4 cut(s) 60, 179, 180, 907
AflIII ACRYGT 2 cut(s) 310, 382
AgsI TTSAA 6 cut(s) 478, 806, 1132, 1178, 1327, 1556
AjnI CCWGG 2 cut(s) 904, 973
AjuI GAANNNNNNNTTGG 2 cut(s) 947, 979
AleI CACNNNNGTG 2 cut(s) 1191, 1382
Alw21I GWGCWC 2 cut(s) 8, 68
Alw26I GTCTC 9 cut(s) 11, 65, 330, 583, 653, 1213, 1345, 1367, 1574
AlwI GGATC 2 cut(s) 905, 918
AlwNI CAGNNNCTG 1 cut(s) 1253
AoxI GGCC 4 cut(s) 51, 170, 698, 1452
ApeKI GCWGC 1 cut(s) 707
ApoI RAATTY 3 cut(s) 685, 787, 1126
ArsI GACNNNNNNTTYG 2 cut(s) 1050, 1082
AseI ATTAAT 2 cut(s) 177, 672
Asp700I GAANNNNTTC 2 cut(s) 1127, 1187
AspA2I CCTAGG 1 cut(s) 608
AspLEI GCGC 1 cut(s) 1138
AspS9I GGNCC 2 cut(s) 171, 781
AsuHPI GGTGA 2 cut(s) 175, 509
AvaII GGWCC 1 cut(s) 781
AvrII CCTAGG 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 419
BamHI GGATCC 1 cut(s) 910
BanII GRGCYC 2 cut(s) 8, 524
BauI CACGAG 1 cut(s) 1041
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 2 cut(s) 8, 68
BbvI GCAGC 1 cut(s) 694
BccI CCATC 6 cut(s) 202, 929, 972, 1055, 1252, 1513
BceAI ACGGC 1 cut(s) 976
BciT130I CCWGG 2 cut(s) 906, 975
BclI TGATCA 1 cut(s) 892
BcoDI GTCTC 9 cut(s) 11, 65, 330, 583, 653, 1213, 1345, 1367, 1574
BfaI CTAG 4 cut(s) 420, 609, 746, 1005
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 5 cut(s) 615, 698, 708, 863, 1455
BlnI CCTAGG 1 cut(s) 608
BlsI GCNGC 5 cut(s) 616, 699, 709, 864, 1456
Bme1390I CCNGG 2 cut(s) 906, 975
Bme18I GGWCC 1 cut(s) 781
BmgT120I GGNCC 2 cut(s) 171, 781
BmiI GGNNCC 2 cut(s) 435, 912
BmrFI CCNGG 2 cut(s) 906, 975
BmsI GCATC 2 cut(s) 1039, 1154
BpiI GAAGAC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 494, 526
Bpu10I CCTNAGC 2 cut(s) 373, 925
BpuEI CTTGAG 1 cut(s) 1195
BsaAI YACGTR 1 cut(s) 1418
BsaI GGTCTC 2 cut(s) 1345, 1574
BsaJI CCNNGG 3 cut(s) 608, 905, 1113
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 179, 180, 907
Bse118I RCCGGY 2 cut(s) 1354, 1583
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 2 cut(s) 393, 882
BseBI CCWGG 2 cut(s) 906, 975
BseDI CCNNGG 3 cut(s) 608, 905, 1113
BseGI GGATG 4 cut(s) 127, 276, 940, 983
BseLI CCNNNNNNNGG 4 cut(s) 60, 179, 180, 907
BseMI GCAATG 2 cut(s) 393, 882
BseMII CTCAG 2 cut(s) 813, 939
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 3 cut(s) 218, 515, 676
BseSI GKGCMC 1 cut(s) 419
BseXI GCAGC 1 cut(s) 694
BsgI GTGCAG 1 cut(s) 1065
BshFI GGCC 4 cut(s) 53, 172, 700, 1454
BsiHKAI GWGCWC 2 cut(s) 8, 68
BsiSI CCGG 3 cut(s) 242, 1355, 1584
BslFI GGGAC 2 cut(s) 1038, 1350
BslI CCNNNNNNNGG 4 cut(s) 60, 179, 180, 907
BsmAI GTCTC 9 cut(s) 11, 65, 330, 583, 653, 1213, 1345, 1367, 1574
BsmFI GGGAC 2 cut(s) 1038, 1350
BsmI GAATGC 2 cut(s) 317, 812
BsnI GGCC 4 cut(s) 53, 172, 700, 1454
Bso31I GGTCTC 2 cut(s) 1345, 1574
Bsp1286I GDGCHC 4 cut(s) 8, 68, 419, 524
Bsp143I GATC 3 cut(s) 108, 892, 910
BspACI CCGC 5 cut(s) 398, 614, 697, 863, 1455
BspANI GGCC 4 cut(s) 53, 172, 700, 1454
BspCNI CTCAG 2 cut(s) 814, 938
BspLI GGNNCC 2 cut(s) 435, 912
BspMAI CTGCAG 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 905, 918
BspTNI GGTCTC 2 cut(s) 1345, 1574
BsrDI GCAATG 2 cut(s) 393, 882
BsrFI RCCGGY 2 cut(s) 1354, 1583
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 2 cut(s) 1354, 1583
BssECI CCNNGG 3 cut(s) 608, 905, 1113
BssMI GATC 3 cut(s) 108, 892, 910
BssSI CACGAG 1 cut(s) 1041
BssT1I CCWWGG 1 cut(s) 608
Bst2BI CACGAG 1 cut(s) 1041
Bst2UI CCWGG 2 cut(s) 906, 975
Bst4CI ACNGT 4 cut(s) 199, 759, 1384, 1413
Bst6I CTCTTC 4 cut(s) 363, 1091, 1113, 1461
BstAPI GCANNNNNTGC 1 cut(s) 446
BstBAI YACGTR 1 cut(s) 1418
BstC8I GCNNGC 2 cut(s) 922, 1452
BstDEI CTNAG 5 cut(s) 373, 681, 822, 925, 1479
BstDSI CCRYGG 1 cut(s) 1113
BstF5I GGATG 4 cut(s) 127, 276, 940, 983
BstHHI GCGC 1 cut(s) 1138
BstKTI GATC 3 cut(s) 111, 895, 913
BstMAI GTCTC 9 cut(s) 11, 65, 330, 583, 653, 1213, 1345, 1367, 1574
BstMBI GATC 3 cut(s) 108, 892, 910
BstMWI GCNNNNNNNGC 3 cut(s) 251, 446, 1142
BstNI CCWGG 2 cut(s) 906, 975
BstNSI RCATGY 3 cut(s) 314, 386, 924
BstSCI CCNGG 2 cut(s) 904, 973
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 694
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 910
BstYI RGATCY 1 cut(s) 910
BsuRI GGCC 4 cut(s) 53, 172, 700, 1454
BtgI CCRYGG 1 cut(s) 1113
BtsCI GGATG 4 cut(s) 127, 276, 940, 983
BtsI GCAGTG 1 cut(s) 1251
BtsIMutI CAGTG 2 cut(s) 204, 1251
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 922, 1452
CaiI CAGNNNCTG 1 cut(s) 1253
CfoI GCGC 1 cut(s) 1138
Cfr10I RCCGGY 2 cut(s) 1354, 1583
Cfr13I GGNCC 2 cut(s) 171, 781
CspCI CAANNNNNGTGG 2 cut(s) 1381, 1416
CviAII CATG 5 cut(s) 305, 311, 383, 731, 921
DdeI CTNAG 5 cut(s) 373, 681, 822, 925, 1479
DpnI GATC 3 cut(s) 110, 894, 912
DpnII GATC 3 cut(s) 108, 892, 910
DraIII CACNNNGTG 2 cut(s) 871, 1114
DrdI GACNNNNNNGTC 2 cut(s) 1359, 1588
DseDI GACNNNNNNGTC 2 cut(s) 1359, 1588
EaeI YGGCCR 2 cut(s) 51, 1452
Eam1104I CTCTTC 4 cut(s) 363, 1091, 1113, 1461
EarI CTCTTC 4 cut(s) 363, 1091, 1113, 1461
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 608
Eco24I GRGCYC 2 cut(s) 8, 524
Eco31I GGTCTC 2 cut(s) 1345, 1574
Eco47I GGWCC 1 cut(s) 781
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 4 cut(s) 275, 384, 1224, 1485
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 904, 973
EcoT14I CCWWGG 1 cut(s) 608
EcoT38I GRGCYC 2 cut(s) 8, 524
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 5 cut(s) 308, 314, 386, 734, 924
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FaqI GGGAC 2 cut(s) 1038, 1350
FatI CATG 5 cut(s) 304, 310, 382, 730, 920
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 5 cut(s) 615, 698, 708, 863, 1455
FokI GGATG 4 cut(s) 134, 283, 947, 990
FriOI GRGCYC 2 cut(s) 8, 524
Fsp4HI GCNGC 5 cut(s) 615, 698, 708, 863, 1455
FspBI CTAG 4 cut(s) 420, 609, 746, 1005
GlaI GCGC 1 cut(s) 1137
GluI GCNGC 5 cut(s) 615, 698, 708, 863, 1455
HaeIII GGCC 4 cut(s) 53, 172, 700, 1454
HapII CCGG 3 cut(s) 242, 1355, 1584
HhaI GCGC 1 cut(s) 1138
Hin1II CATG 5 cut(s) 308, 314, 386, 734, 924
Hin6I GCGC 1 cut(s) 1136
HinP1I GCGC 1 cut(s) 1136
HindIII AAGCTT 5 cut(s) 252, 287, 370, 469, 1155
HinfI GANTC 2 cut(s) 130, 1099
HpaII CCGG 3 cut(s) 242, 1355, 1584
HphI GGTGA 2 cut(s) 175, 509
Hpy166II GTNNAC 3 cut(s) 581, 634, 1172
Hpy188I TCNGA 3 cut(s) 70, 461, 946
Hpy188III TCNNGA 6 cut(s) 293, 362, 896, 1212, 1234, 1276
Hpy8I GTNNAC 3 cut(s) 581, 634, 1172
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 363, 911, 1534
HpyCH4III ACNGT 4 cut(s) 199, 759, 1384, 1413
HpyCH4IV ACGT 2 cut(s) 1398, 1417
HpyCH4V TGCA 8 cut(s) 440, 449, 538, 793, 880, 920, 1046, 1052
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 446, 1142
HpyF3I CTNAG 5 cut(s) 373, 681, 822, 925, 1479
HpySE526I ACGT 2 cut(s) 1398, 1417
Hsp92II CATG 5 cut(s) 308, 314, 386, 734, 924
HspAI GCGC 1 cut(s) 1136
Ksp22I TGATCA 1 cut(s) 892
Kzo9I GATC 3 cut(s) 108, 892, 910
LmnI GCTCC 2 cut(s) 226, 439
Lsp1109I GCAGC 1 cut(s) 694
LweI GCATC 2 cut(s) 1039, 1154
MaeI CTAG 4 cut(s) 420, 609, 746, 1005
MaeII ACGT 2 cut(s) 1398, 1417
MaeIII GTNAC 6 cut(s) 163, 408, 938, 997, 1413, 1418
MalI GATC 3 cut(s) 110, 894, 912
MboI GATC 3 cut(s) 108, 892, 910
MfeI CAATTG 2 cut(s) 721, 1222
MflI RGATCY 1 cut(s) 910
MhlI GDGCHC 4 cut(s) 8, 68, 419, 524
MluCI AATT 8 cut(s) 673, 685, 721, 787, 888, 1126, 1222, 1259
MlyI GAGTC 1 cut(s) 1108
MmeI TCCRAC 3 cut(s) 531, 811, 912
MnlI CCTC 8 cut(s) 112, 162, 196, 493, 549, 654, 1329, 1417
MroXI GAANNNNTTC 2 cut(s) 1127, 1187
MslI CAYNNNNRTG 4 cut(s) 309, 1018, 1191, 1382
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 3 cut(s) 242, 1355, 1584
MspR9I CCNGG 2 cut(s) 906, 975
MunI CAATTG 2 cut(s) 721, 1222
Mva1269I GAATGC 2 cut(s) 317, 812
MvaI CCWGG 2 cut(s) 906, 975
MwoI GCNNNNNNNGC 3 cut(s) 251, 446, 1142
NdeII GATC 3 cut(s) 108, 892, 910
NlaIII CATG 5 cut(s) 308, 314, 386, 734, 924
NlaIV GGNNCC 2 cut(s) 435, 912
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 3 cut(s) 163, 408, 1413
NspI RCATGY 3 cut(s) 314, 386, 924
OliI CACNNNNGTG 2 cut(s) 1191, 1382
PaeI GCATGC 1 cut(s) 924
PaqCI CACCTGC 1 cut(s) 151
PciI ACATGT 2 cut(s) 310, 382
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PctI GAATGC 2 cut(s) 317, 812
PdmI GAANNNNTTC 2 cut(s) 1127, 1187
PfeI GAWTC 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 973
PkrI GCNGC 5 cut(s) 616, 699, 709, 864, 1456
PleI GAGTC 1 cut(s) 1107
PpsI GAGTC 1 cut(s) 1107
Ppu21I YACGTR 1 cut(s) 1418
PscI ACATGT 2 cut(s) 310, 382
PshBI ATTAAT 2 cut(s) 177, 672
Psp124BI GAGCTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 1398
Psp6I CCWGG 2 cut(s) 904, 973
PspGI CCWGG 2 cut(s) 904, 973
PspN4I GGNNCC 2 cut(s) 435, 912
PspPI GGNCC 2 cut(s) 171, 781
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 1253
PsuI RGATCY 1 cut(s) 910
PvuII CAGCTG 1 cut(s) 532
RseI CAYNNNNRTG 4 cut(s) 309, 1018, 1191, 1382
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 5 cut(s) 615, 698, 708, 863, 1455
Sau3AI GATC 3 cut(s) 108, 892, 910
Sau96I GGNCC 2 cut(s) 171, 781
SchI GAGTC 1 cut(s) 1108
ScrFI CCNGG 2 cut(s) 906, 975
SduI GDGCHC 4 cut(s) 8, 68, 419, 524
SfaNI GCATC 2 cut(s) 1039, 1154
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 781
SmiMI CAYNNNNRTG 4 cut(s) 309, 1018, 1191, 1382
SmlI CTYRAG 1 cut(s) 1210
SmoI CTYRAG 1 cut(s) 1210
SphI GCATGC 1 cut(s) 924
Sse9I AATT 8 cut(s) 673, 685, 721, 787, 888, 1126, 1222, 1259
SsiI CCGC 5 cut(s) 398, 614, 697, 863, 1455
SspI AATATT 1 cut(s) 1492
SspMI CTAG 4 cut(s) 420, 609, 746, 1005
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 904, 973
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 4 cut(s) 199, 759, 1384, 1413
TaiI ACGT 2 cut(s) 1401, 1420
TaqI TCGA 2 cut(s) 8, 518
TasI AATT 8 cut(s) 673, 685, 721, 787, 888, 1126, 1222, 1259
TauI GCSGC 4 cut(s) 617, 700, 865, 1457
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 2 cut(s) 204, 1258
TseFI GTSAC 3 cut(s) 163, 408, 1413
TseI GCWGC 1 cut(s) 707
Tsp45I GTSAC 3 cut(s) 163, 408, 1413
TspDTI ATGAA 3 cut(s) 299, 321, 1443
TspGWI ACGGA 3 cut(s) 239, 794, 1102
TspRI CASTG 2 cut(s) 204, 1258
VpaK11BI GGWCC 1 cut(s) 781
VspI ATTAAT 2 cut(s) 177, 672
XapI RAATTY 3 cut(s) 685, 787, 1126
XceI RCATGY 3 cut(s) 314, 386, 924
XmaJI CCTAGG 1 cut(s) 608
XmnI GAANNNNTTC 2 cut(s) 1127, 1187
XspI CTAG 4 cut(s) 420, 609, 746, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.