Rh5CG296100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002054
Physical Location & Seq
Reverse (-)
32609636 .. 32611080
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG296100.1

Sequence Viewer

Length: 1422 bp
ATGAGCTCGAAGTATGAGACCAACTTTAACAAGGATTTGGTGCTGGTTTTGGCCAAGTTTTGGTGCTCGGAGACTAATACATTCGTGTTTGATTGGGGCGAAGCGACGATCACAATGGAGGATGTGATGGTTCTTGGTGGGTTTTCGGTTCTGGGTAAGCAGGTGACGAGGCCCATTAATGGGGTGTTGATGGAAACAGTGGAGGAGATGGAGAAGAAGAAGATGGAGCTGACGAGAACTCCGGCGAAGAAAGCTTATCACTTTAACTGGATGACCCATTTTATGAAGCTTCAGGACTACAAGCATGAACATGTGGCATTCCTGTCTCTGTGGTTGGCAAGGTTTGTGTTTCCCTCTCTTCCTGAAGAAAGCTTAGGCAAACATGTGTTTCCCATTGCGGTTCTTTTGTCACAGGGCACTAGAGTTGCTCTGGCTCCTGCAGTTCTTGCAGGGCTTTTCAGAGATTTAAGCTTTTTGAAAAACCAAGCCTTTAAGGGTGAGGAGATAATCTCTGTTTCGAGCCCATTTCAGCTGTTGCAGTTGTGGGCGTTGGAGAGGTTTCAGGGTATGCTTAAGAGTCCACCAAAGAGACTTAACCCCTGTGAGCCTAGGGCGGCTCGGTGGAACAAAGTGAACATTAAGATTAGTCTCCCTGATGTGAGGAGAGAGATTAATTTGGCTAAGAATTTTCGGTGGCGACCTTATGCTGCTGAACTGACCAATTGGCGACATGGTTCTTACTACCTAGCTAAGGAACTGTGCTTTTATGATAAAACTACGGACCAGAATTTACAGTCTTATGTTGAATGCTTGTGTTGTGCTGAGTTGGTTGGAGTAGAAGATTGTAAGGAGAAGTATTTGCCGCACAGGGTGGCAATGCAGTTTGGAATTGATCAAGACCTTCCTGGGGATCCTGCTGCATGCTCAGGGTTGGATGGTAACTCGGACACTACCGATGTTTGTTTCTTTCTTCCAGGACGGTTTTTTGAGCCGTGTGTAACTGCTAGATACTCATATTGGTGGGGACTATATAAGTCTGCTCGCGCGGATGCAATCAAAGATGGTGTCAAAGTGGCTGTAAAAAATATTAAGGAGAAGAGTCATCATCACTCCGTGGAAGAGAAGAATTTCAAGGCGCATAAGGCATCTACAAAAGCTTTATCAAAGTGTGAACTTGAAAAGAACCACTTCTGTGCTGTGCCTGAAGTCTCAACAAAATCCAATTGTGCTGTCAGGACACAACCCTCAGACACTGCTCAATTTCCCAAGATGGTCAAGAATGGTGGTGGCAATATTCCTCTGTTGAAACAGAGGAGACTTGTGGGAAAGAGACCGACTTGTCTCCGTAATGCTTCCACAACCAGGAAATCCACAAATGTTGTTTCGTCACAGTCAGAAACGGAAGCTGGCCACACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

473

Amino Acids

53.69

Weight (kDa)

9.11

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 2 - 305 3.7e-83 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 151
AasI GACNNNNNNGTC 1 cut(s) 1338
Acc36I ACCTGC 1 cut(s) 151
AccB7I CCANNNNNTGG 1 cut(s) 60
AccII CGCG 2 cut(s) 1044, 1046
AciI CCGC 4 cut(s) 398, 614, 863, 1046
AclWI GGATC 2 cut(s) 905, 918
AcoI YGGCCR 2 cut(s) 51, 1408
AcsI RAATTY 3 cut(s) 685, 787, 1126
AcuI CTGAAG 3 cut(s) 275, 384, 1224
AdeI CACNNNGTG 2 cut(s) 871, 1114
AfiI CCNNNNNNNGG 6 cut(s) 60, 179, 180, 751, 907, 1362
AflII CTTAAG 1 cut(s) 572
AflIII ACRYGT 2 cut(s) 310, 382
AgsI TTSAA 5 cut(s) 478, 806, 1132, 1178, 1306
AjnI CCWGG 3 cut(s) 904, 973, 1361
AleI CACNNNNGTG 1 cut(s) 1191
Alw21I GWGCWC 2 cut(s) 8, 68
Alw26I GTCTC 9 cut(s) 11, 65, 330, 583, 653, 1213, 1309, 1324, 1346
AlwI GGATC 2 cut(s) 905, 918
AlwNI CAGNNNCTG 1 cut(s) 1253
AoxI GGCC 3 cut(s) 51, 170, 1408
ApeKI GCWGC 2 cut(s) 707, 917
ApoI RAATTY 3 cut(s) 685, 787, 1126
ArsI GACNNNNNNTTYG 2 cut(s) 1050, 1082
AseI ATTAAT 2 cut(s) 177, 672
Asp700I GAANNNNTTC 2 cut(s) 1127, 1187
AspA2I CCTAGG 1 cut(s) 608
AspLEI GCGC 2 cut(s) 1046, 1138
AspS9I GGNCC 2 cut(s) 171, 781
AsuHPI GGTGA 2 cut(s) 175, 509
AvaII GGWCC 1 cut(s) 781
AvrII CCTAGG 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 419
BalI TGGCCA 2 cut(s) 53, 1410
BamHI GGATCC 1 cut(s) 910
BanII GRGCYC 2 cut(s) 8, 524
Bbv12I GWGCWC 2 cut(s) 8, 68
BbvI GCAGC 2 cut(s) 694, 904
BccI CCATC 7 cut(s) 121, 184, 202, 217, 929, 1055, 1264
BceAI ACGGC 1 cut(s) 976
BciT130I CCWGG 3 cut(s) 906, 975, 1363
BclI TGATCA 1 cut(s) 892
BcoDI GTCTC 9 cut(s) 11, 65, 330, 583, 653, 1213, 1309, 1324, 1346
BfaI CTAG 4 cut(s) 420, 609, 746, 1005
BfmI CTRYAG 1 cut(s) 438
BfrI CTTAAG 1 cut(s) 572
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 4 cut(s) 615, 708, 863, 918
BlnI CCTAGG 1 cut(s) 608
BlsI GCNGC 4 cut(s) 616, 709, 864, 919
Bme1390I CCNGG 3 cut(s) 906, 975, 1363
Bme18I GGWCC 1 cut(s) 781
BmgT120I GGNCC 2 cut(s) 171, 781
BmiI GGNNCC 2 cut(s) 435, 912
BmrFI CCNGG 3 cut(s) 906, 975, 1363
BmsI GCATC 2 cut(s) 1039, 1154
BplI GAGNNNNNCTC 2 cut(s) 494, 526
Bpu10I CCTNAGC 3 cut(s) 373, 750, 925
BsaI GGTCTC 2 cut(s) 11, 1324
BsaJI CCNNGG 3 cut(s) 608, 905, 1113
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 6 cut(s) 60, 179, 180, 751, 907, 1362
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 2 cut(s) 393, 882
BseBI CCWGG 3 cut(s) 906, 975, 1363
BseDI CCNNGG 3 cut(s) 608, 905, 1113
BseGI GGATG 4 cut(s) 127, 276, 940, 1054
BseLI CCNNNNNNNGG 6 cut(s) 60, 179, 180, 751, 907, 1362
BseMI GCAATG 2 cut(s) 393, 882
BseMII CTCAG 3 cut(s) 813, 939, 1260
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 4 cut(s) 218, 515, 676, 1327
BseSI GKGCMC 1 cut(s) 419
BseXI GCAGC 2 cut(s) 694, 904
Bsh1236I CGCG 2 cut(s) 1044, 1046
BshFI GGCC 3 cut(s) 53, 172, 1410
BsiHKAI GWGCWC 2 cut(s) 8, 68
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 1038
BslI CCNNNNNNNGG 6 cut(s) 60, 179, 180, 751, 907, 1362
BsmAI GTCTC 9 cut(s) 11, 65, 330, 583, 653, 1213, 1309, 1324, 1346
BsmFI GGGAC 1 cut(s) 1038
BsmI GAATGC 2 cut(s) 317, 812
BsnI GGCC 3 cut(s) 53, 172, 1410
Bso31I GGTCTC 2 cut(s) 11, 1324
Bsp1286I GDGCHC 4 cut(s) 8, 68, 419, 524
Bsp143I GATC 3 cut(s) 108, 892, 910
BspACI CCGC 4 cut(s) 398, 614, 863, 1046
BspANI GGCC 3 cut(s) 53, 172, 1410
BspCNI CTCAG 3 cut(s) 814, 938, 1259
BspFNI CGCG 2 cut(s) 1044, 1046
BspLI GGNNCC 2 cut(s) 435, 912
BspMAI CTGCAG 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 905, 918
BspTI CTTAAG 1 cut(s) 572
BspTNI GGTCTC 2 cut(s) 11, 1324
BsrDI GCAATG 2 cut(s) 393, 882
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 608, 905, 1113
BssMI GATC 3 cut(s) 108, 892, 910
BssT1I CCWWGG 1 cut(s) 608
Bst2UI CCWGG 3 cut(s) 906, 975, 1363
Bst4CI ACNGT 5 cut(s) 199, 759, 795, 981, 1392
Bst6I CTCTTC 3 cut(s) 363, 1091, 1113
BstAFI CTTAAG 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 446
BstC8I GCNNGC 3 cut(s) 922, 1042, 1408
BstDEI CTNAG 6 cut(s) 373, 681, 750, 822, 925, 1246
BstDSI CCRYGG 1 cut(s) 1113
BstENI CCTNNNNNAGG 1 cut(s) 749
BstF5I GGATG 4 cut(s) 127, 276, 940, 1054
BstFNI CGCG 2 cut(s) 1044, 1046
BstHHI GCGC 2 cut(s) 1046, 1138
BstKTI GATC 3 cut(s) 111, 895, 913
BstMAI GTCTC 9 cut(s) 11, 65, 330, 583, 653, 1213, 1309, 1324, 1346
BstMBI GATC 3 cut(s) 108, 892, 910
BstMWI GCNNNNNNNGC 3 cut(s) 251, 446, 1142
BstNI CCWGG 3 cut(s) 906, 975, 1363
BstNSI RCATGY 3 cut(s) 314, 386, 924
BstSCI CCNGG 3 cut(s) 904, 973, 1361
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 419
BstUI CGCG 2 cut(s) 1044, 1046
BstV1I GCAGC 2 cut(s) 694, 904
BstX2I RGATCY 1 cut(s) 910
BstYI RGATCY 1 cut(s) 910
BsuRI GGCC 3 cut(s) 53, 172, 1410
BtgI CCRYGG 1 cut(s) 1113
BtsCI GGATG 4 cut(s) 127, 276, 940, 1054
BtsI GCAGTG 1 cut(s) 1251
BtsIMutI CAGTG 2 cut(s) 204, 1251
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 3 cut(s) 922, 1042, 1408
CaiI CAGNNNCTG 1 cut(s) 1253
CfoI GCGC 2 cut(s) 1046, 1138
Cfr13I GGNCC 2 cut(s) 171, 781
CspCI CAANNNNNGTGG 4 cut(s) 1264, 1299, 1360, 1395
CviAII CATG 5 cut(s) 305, 311, 383, 731, 921
DdeI CTNAG 6 cut(s) 373, 681, 750, 822, 925, 1246
DpnI GATC 3 cut(s) 110, 894, 912
DpnII GATC 3 cut(s) 108, 892, 910
DraIII CACNNNGTG 2 cut(s) 871, 1114
DrdI GACNNNNNNGTC 1 cut(s) 1338
DseDI GACNNNNNNGTC 1 cut(s) 1338
EaeI YGGCCR 2 cut(s) 51, 1408
Eam1104I CTCTTC 3 cut(s) 363, 1091, 1113
EarI CTCTTC 3 cut(s) 363, 1091, 1113
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 608
Eco24I GRGCYC 2 cut(s) 8, 524
Eco31I GGTCTC 2 cut(s) 11, 1324
Eco47I GGWCC 1 cut(s) 781
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 3 cut(s) 275, 384, 1224
EcoICRI GAGCTC 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoRII CCWGG 3 cut(s) 904, 973, 1361
EcoT14I CCWWGG 1 cut(s) 608
EcoT38I GRGCYC 2 cut(s) 8, 524
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 5 cut(s) 308, 314, 386, 734, 924
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FaqI GGGAC 1 cut(s) 1038
FatI CATG 5 cut(s) 304, 310, 382, 730, 920
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 4 cut(s) 615, 708, 863, 918
FokI GGATG 4 cut(s) 134, 283, 947, 1061
FriOI GRGCYC 2 cut(s) 8, 524
Fsp4HI GCNGC 4 cut(s) 615, 708, 863, 918
FspBI CTAG 4 cut(s) 420, 609, 746, 1005
GlaI GCGC 2 cut(s) 1045, 1137
GluI GCNGC 4 cut(s) 615, 708, 863, 918
HaeIII GGCC 3 cut(s) 53, 172, 1410
HapII CCGG 1 cut(s) 242
HhaI GCGC 2 cut(s) 1046, 1138
Hin1II CATG 5 cut(s) 308, 314, 386, 734, 924
Hin6I GCGC 2 cut(s) 1044, 1136
HinP1I GCGC 2 cut(s) 1044, 1136
HindIII AAGCTT 5 cut(s) 252, 287, 370, 469, 1155
HinfI GANTC 2 cut(s) 577, 1099
HpaII CCGG 1 cut(s) 242
HphI GGTGA 2 cut(s) 175, 509
Hpy166II GTNNAC 3 cut(s) 581, 634, 1172
Hpy188I TCNGA 5 cut(s) 70, 461, 946, 1249, 1396
Hpy188III TCNNGA 5 cut(s) 293, 362, 896, 1234, 1276
Hpy8I GTNNAC 3 cut(s) 581, 634, 1172
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 911
HpyCH4III ACNGT 5 cut(s) 199, 759, 795, 981, 1392
HpyCH4V TGCA 6 cut(s) 440, 449, 538, 880, 920, 1052
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 446, 1142
HpyF3I CTNAG 6 cut(s) 373, 681, 750, 822, 925, 1246
Hsp92II CATG 5 cut(s) 308, 314, 386, 734, 924
HspAI GCGC 2 cut(s) 1044, 1136
Ksp22I TGATCA 1 cut(s) 892
Kzo9I GATC 3 cut(s) 108, 892, 910
LmnI GCTCC 2 cut(s) 226, 439
Lsp1109I GCAGC 2 cut(s) 694, 904
LweI GCATC 2 cut(s) 1039, 1154
MaeI CTAG 4 cut(s) 420, 609, 746, 1005
MaeIII GTNAC 5 cut(s) 163, 408, 938, 997, 1386
MalI GATC 3 cut(s) 110, 894, 912
MboI GATC 3 cut(s) 108, 892, 910
MfeI CAATTG 2 cut(s) 721, 1222
MflI RGATCY 1 cut(s) 910
MhlI GDGCHC 4 cut(s) 8, 68, 419, 524
MlsI TGGCCA 2 cut(s) 53, 1410
MluCI AATT 8 cut(s) 673, 685, 721, 787, 888, 1126, 1222, 1259
MluNI TGGCCA 2 cut(s) 53, 1410
MlyI GAGTC 2 cut(s) 586, 1108
MmeI TCCRAC 3 cut(s) 531, 811, 912
Mox20I TGGCCA 2 cut(s) 53, 1410
MroXI GAANNNNTTC 2 cut(s) 1127, 1187
MscI TGGCCA 2 cut(s) 53, 1410
MslI CAYNNNNRTG 3 cut(s) 309, 1018, 1191
Msp20I TGGCCA 2 cut(s) 53, 1410
MspA1I CMGCKG 1 cut(s) 532
MspCI CTTAAG 1 cut(s) 572
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 3 cut(s) 906, 975, 1363
MunI CAATTG 2 cut(s) 721, 1222
Mva1269I GAATGC 2 cut(s) 317, 812
MvaI CCWGG 3 cut(s) 906, 975, 1363
MvnI CGCG 2 cut(s) 1044, 1046
MwoI GCNNNNNNNGC 3 cut(s) 251, 446, 1142
NdeII GATC 3 cut(s) 108, 892, 910
NlaIII CATG 5 cut(s) 308, 314, 386, 734, 924
NlaIV GGNNCC 2 cut(s) 435, 912
NmuCI GTSAC 3 cut(s) 163, 408, 1386
NspI RCATGY 3 cut(s) 314, 386, 924
OliI CACNNNNGTG 1 cut(s) 1191
PaeI GCATGC 1 cut(s) 924
PaqCI CACCTGC 1 cut(s) 151
PciI ACATGT 2 cut(s) 310, 382
PctI GAATGC 2 cut(s) 317, 812
PdmI GAANNNNTTC 2 cut(s) 1127, 1187
PflMI CCANNNNNTGG 1 cut(s) 60
PfoI TCCNGGA 1 cut(s) 973
PkrI GCNGC 4 cut(s) 616, 709, 864, 919
PleI GAGTC 2 cut(s) 585, 1107
PpsI GAGTC 2 cut(s) 585, 1107
PscI ACATGT 2 cut(s) 310, 382
PshBI ATTAAT 2 cut(s) 177, 672
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 3 cut(s) 904, 973, 1361
PspGI CCWGG 3 cut(s) 904, 973, 1361
PspN4I GGNNCC 2 cut(s) 435, 912
PspPI GGNCC 2 cut(s) 171, 781
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 1253
PsuI RGATCY 1 cut(s) 910
PvuII CAGCTG 1 cut(s) 532
RseI CAYNNNNRTG 3 cut(s) 309, 1018, 1191
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 4 cut(s) 615, 708, 863, 918
Sau3AI GATC 3 cut(s) 108, 892, 910
Sau96I GGNCC 2 cut(s) 171, 781
SchI GAGTC 2 cut(s) 586, 1108
ScrFI CCNGG 3 cut(s) 906, 975, 1363
SduI GDGCHC 4 cut(s) 8, 68, 419, 524
SfaNI GCATC 2 cut(s) 1039, 1154
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 781
SmiMI CAYNNNNRTG 3 cut(s) 309, 1018, 1191
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
SphI GCATGC 1 cut(s) 924
Sse9I AATT 8 cut(s) 673, 685, 721, 787, 888, 1126, 1222, 1259
SsiI CCGC 4 cut(s) 398, 614, 863, 1046
SspI AATATT 2 cut(s) 1087, 1294
SspMI CTAG 4 cut(s) 420, 609, 746, 1005
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 904, 973, 1361
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 5 cut(s) 199, 759, 795, 981, 1392
TaqI TCGA 2 cut(s) 8, 518
TaqII GACCGA 1 cut(s) 1348
TasI AATT 8 cut(s) 673, 685, 721, 787, 888, 1126, 1222, 1259
TauI GCSGC 2 cut(s) 617, 865
TscAI CASTG 2 cut(s) 204, 1258
TseFI GTSAC 3 cut(s) 163, 408, 1386
TseI GCWGC 2 cut(s) 707, 917
Tsp45I GTSAC 3 cut(s) 163, 408, 1386
TspDTI ATGAA 2 cut(s) 299, 321
TspGWI ACGGA 4 cut(s) 794, 1102, 1334, 1415
TspRI CASTG 2 cut(s) 204, 1258
Van91I CCANNNNNTGG 1 cut(s) 60
Vha464I CTTAAG 1 cut(s) 572
VpaK11BI GGWCC 1 cut(s) 781
VspI ATTAAT 2 cut(s) 177, 672
XagI CCTNNNNNAGG 1 cut(s) 749
XapI RAATTY 3 cut(s) 685, 787, 1126
XceI RCATGY 3 cut(s) 314, 386, 924
XmaJI CCTAGG 1 cut(s) 608
XmnI GAANNNNTTC 2 cut(s) 1127, 1187
XspI CTAG 4 cut(s) 420, 609, 746, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.