AT4G16050

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002054
Physical Location & Seq
Forward (+)
9092226 .. 9094357
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16050.1

Sequence Viewer

Length: 2001 bp
ATGGATTCAACATTTAGAGATGAAGATCTCGTTGAAGAGAGAGAAGAACTCATGGTGTCTTACAGTGAGAATAACAGTCGACCTATCATGAAAAAAGCTCACTTTTTAAAACCCTTTGTCACCTCCTCCATTGATGGGTTTCAAGGTATGCTTCGTCCATCTCCTTCTCCTGAGTTAAAAGCTTCGTCTTTAAGTGTTTCCTTTCGTGGGTGGAGGTTACCAAACAAAAAGTTTCAGTTTTGGGTTAAAAAAATGGTAGCTTTACACAAACCCACTTGGTTAAAATCTGGGATTTTTGAAGCAATCAAAGCATCGACTTACAGAATCCACAAAAATCCGTCTTTGATTCTCTCTCTCGCTCAGAATTGGTGTCCTGAAACTAATACATTTGTGTTCCCTTGGGGTGAAGCTACCATAACTCTTGAGGATGTGAATGTGCTTCTGGGTTTTTCTATCTCTGGTTCTTCTGTTTTTGCTTCTCTTCAAAGCTCAGAGATGAAAGAAGCAGTGGAGAAACTTCAGAAACGATGTCAAGGGAGCATGAAGCAGGAATCATGGATTTCAAGCTTTGTAGATGATGAAATGGAGCATGAAGCGTTTCTAGTGTTGTGGCTTTCGAAATTTGTGTTTCCAGACAAGTTTTGCAGTTCGATTTCCAGTGATGTTTTCCCCTTAGCTGTTCGTCTAGCTAGAGGTGAAAGGATTGCTTTTGCTCCTGCGGTTCTAGCAAACCTATACAATGATTTGGGTCATATCTGTGTTTTAGCCTCTATACAAAATGTTTTAGCTAGTTCTCTGTTTAAGCTTGTCCAAGTATGGATTTGGGAGAGGTTCAAGAGTATAAGACCAGAAGCTAAGGTGATACCAAGGGGTCAACCTAGAATTGCTCAATGGAGTGGTCTGAAACAGAGATTTAAGAATGTGGGACTGATTATTTTTCATGGTAATTTTGATTGGCGTCCTTATAGTGAACCTTTGGAGAATTGGAACCCACCTCGGTTTTATGTTGAAGAAGCTAAGTGGGTGAGGATTGATGAGAGTCTTGATGGTGATTATGATGACGATGATGAGTTTGTGTCGTTTGCTAGATGTGTGAGAGTTTCTAAGCTTGTAGGTATTGGTGTAGTAGAGAACTACTATCCAAACCGAGTGGCGATGCAATTCGGATTGGCGCAAGATGTTCCTGTTTTGGGTACTAATCATAGAAGAAACTTCACAGAAGAAGAAGCATGGGATGATTACAACAAACCGCTTGTTGGTTTAAAGCTATATTTTCCTTCTCGCGTCGCCACAGCTTCGGTTACTACGAGATACAGAGACTGGTGGGCTAAATCAGTTTCAGAAATGCGGAAAGAATCAATGGAAACTTTTAATGTAAGCAGTACAGTTGATCATTATGATGATAGTGATGATGATATACCCCTTAAGATAGTACCATTGAGCCAAGTCTATCAGAAGTTGGACGATGAAATGAAGAAAGCCAAGCATTCGACAAACAAGAGACGCAAGCGAGCTCGTGAGGATGATGAGAGTGCTGCTGAGACAGAAGATGACGAGAGTGCTGACACGGAAGATGATGAGAGTGCTGACACGGAAGATGATGAGAGTGCTGAGACAGAAGATGATGATAACATGACCATTGCTCAGAGGATCAATTCTAGAAAGAAGTCTGATGACATAGAGAATACTGAAGGAGAAAGAAGTAGACTTGTGGCGGATAACAATGTTTCAGGCCTTCCTCAAAAGCTTGCTTATGGAGATGAGACAGTAGCAACAACACAAGAAGAAACAGAGCAAAAGAATAATGAAAACAAGTCTTCTAATGGAGTAGCTGCTGAGAAGGAAGAAGATGATGAGAGATTGAAACAGAGAAAGCTTGCAATAAAGGAACTAGCTTTGAAGACGGAAGCACGAATGTTGAAGGTAGAGAACACTTTGGCAAAGATTAAACAATGGAAACTCACAAGACTTCACACCAAAAAACCTCTAGTTTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

666

Amino Acids

76.38

Weight (kDa)

5.32

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 97 - 442 2.4e-113 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 79, 1705
AccII CGCG 1 cut(s) 1284
AciI CCGC 4 cut(s) 719, 1250, 1348, 1715
AclWI GGATC 1 cut(s) 1658
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 2 cut(s) 503, 1710
AcyI GRCGYC 1 cut(s) 958
AfaI GTAC 3 cut(s) 1195, 1384, 1434
AfiI CCNNNNNNNGG 4 cut(s) 135, 207, 1190, 1256
AflII CTTAAG 1 cut(s) 1424
Alw21I GWGCWC 1 cut(s) 1516
Alw26I GTCTC 5 cut(s) 1311, 1495, 1535, 1607, 1757
AlwI GGATC 1 cut(s) 1658
AlwNI CAGNNNCTG 1 cut(s) 1320
AoxI GGCC 1 cut(s) 1732
ApeKI GCWGC 2 cut(s) 1535, 1832
ApoI RAATTY 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 1 cut(s) 1174
AsuHPI GGTGA 6 cut(s) 112, 416, 707, 871, 1036, 1061
AsuII TTCGAA 1 cut(s) 617
BanII GRGCYC 1 cut(s) 1516
BauI CACGAG 1 cut(s) 1515
BbsI GAAGAC 2 cut(s) 1809, 1907
Bbv12I GWGCWC 1 cut(s) 1516
BbvI GCAGC 2 cut(s) 1522, 1819
BccI CCATC 3 cut(s) 128, 166, 1040
BclI TGATCA 1 cut(s) 1390
BcoDI GTCTC 5 cut(s) 1311, 1495, 1535, 1607, 1757
BfrI CTTAAG 1 cut(s) 1424
BglII AGATCT 1 cut(s) 25
BisI GCNGC 2 cut(s) 1536, 1833
BlsI GCNGC 2 cut(s) 1537, 1834
BmiI GGNNCC 1 cut(s) 989
BmsI GCATC 2 cut(s) 320, 1146
BpiI GAAGAC 2 cut(s) 1809, 1907
BplI GAGNNNNNCTC 2 cut(s) 33, 65
Bpu10I CCTNAGC 2 cut(s) 673, 855
Bpu14I TTCGAA 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 958
BsaJI CCNNGG 3 cut(s) 398, 866, 995
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 207, 1190, 1256
Bse1I ACTGG 2 cut(s) 657, 1325
Bse3DI GCAATG 1 cut(s) 1638
Bse8I GATNNNNATC 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 398, 866, 995
BseGI GGATG 3 cut(s) 433, 1240, 1528
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 4 cut(s) 135, 207, 1190, 1256
BseMI GCAATG 1 cut(s) 1638
BseMII CTCAG 7 cut(s) 162, 374, 504, 1530, 1602, 1658, 1827
BseNI ACTGG 2 cut(s) 657, 1325
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 1522, 1819
Bsh1236I CGCG 1 cut(s) 1284
BshFI GGCC 1 cut(s) 1734
BsiHKAI GWGCWC 1 cut(s) 1516
BslFI GGGAC 1 cut(s) 939
BslI CCNNNNNNNGG 4 cut(s) 135, 207, 1190, 1256
BsmAI GTCTC 5 cut(s) 1311, 1495, 1535, 1607, 1757
BsmBI CGTCTC 1 cut(s) 1495
BsmFI GGGAC 1 cut(s) 939
BsmI GAATGC 1 cut(s) 1486
BsnI GGCC 1 cut(s) 1734
Bsp119I TTCGAA 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 1516
Bsp143I GATC 3 cut(s) 25, 1390, 1650
BspACI CCGC 4 cut(s) 719, 1250, 1348, 1715
BspANI GGCC 1 cut(s) 1734
BspCNI CTCAG 7 cut(s) 163, 373, 503, 1531, 1603, 1657, 1828
BspFNI CGCG 1 cut(s) 1284
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 989
BspPI GGATC 1 cut(s) 1658
BspT104I TTCGAA 1 cut(s) 617
BspTI CTTAAG 1 cut(s) 1424
BsrDI GCAATG 1 cut(s) 1638
BsrI ACTGG 2 cut(s) 657, 1325
BssECI CCNNGG 3 cut(s) 398, 866, 995
BssMI GATC 3 cut(s) 25, 1390, 1650
BssNI GRCGYC 1 cut(s) 958
BssSI CACGAG 1 cut(s) 1515
BssT1I CCWWGG 2 cut(s) 398, 866
Bst2BI CACGAG 1 cut(s) 1515
Bst4CI ACNGT 4 cut(s) 65, 77, 1387, 1768
Bst6I CTCTTC 2 cut(s) 30, 486
BstACI GRCGYC 1 cut(s) 958
BstAFI CTTAAG 1 cut(s) 1424
BstBI TTCGAA 1 cut(s) 617
BstC8I GCNNGC 4 cut(s) 1508, 1512, 1749, 1878
BstEII GGTNACC 1 cut(s) 216
BstF5I GGATG 3 cut(s) 433, 1240, 1528
BstFNI CGCG 1 cut(s) 1284
BstHHI GCGC 1 cut(s) 1174
BstKTI GATC 3 cut(s) 28, 1393, 1653
BstMAI GTCTC 5 cut(s) 1311, 1495, 1535, 1607, 1757
BstMBI GATC 3 cut(s) 25, 1390, 1650
BstMWI GCNNNNNNNGC 2 cut(s) 308, 725
BstPI GGTNACC 1 cut(s) 216
BstUI CGCG 1 cut(s) 1284
BstV1I GCAGC 2 cut(s) 1522, 1819
BstV2I GAAGAC 2 cut(s) 1809, 1907
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 1 cut(s) 1734
BtgZI GCGATG 1 cut(s) 1169
BtsCI GGATG 3 cut(s) 433, 1240, 1528
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 3 cut(s) 70, 513, 664
Cac8I GCNNGC 4 cut(s) 1508, 1512, 1749, 1878
CaiI CAGNNNCTG 1 cut(s) 1320
CciI TCATGA 1 cut(s) 87
CfoI GCGC 1 cut(s) 1174
CseI GACGC 3 cut(s) 947, 1273, 1512
Csp6I GTAC 3 cut(s) 1194, 1383, 1433
CspCI CAANNNNNGTGG 2 cut(s) 1131, 1166
CviAII CATG 8 cut(s) 52, 88, 541, 555, 590, 941, 1230, 1633
CviQI GTAC 3 cut(s) 1194, 1383, 1433
DpnI GATC 3 cut(s) 27, 1392, 1652
DpnII GATC 3 cut(s) 25, 1390, 1650
DraI TTTAAA 2 cut(s) 108, 1263
Eam1104I CTCTTC 2 cut(s) 30, 486
EarI CTCTTC 2 cut(s) 30, 486
EciI GGCGGA 1 cut(s) 1730
Ecl136II GAGCTC 1 cut(s) 1514
Eco130I CCWWGG 2 cut(s) 398, 866
Eco147I AGGCCT 1 cut(s) 1734
Eco24I GRGCYC 1 cut(s) 1516
Eco53kI GAGCTC 1 cut(s) 1514
Eco57I CTGAAG 2 cut(s) 503, 1710
Eco91I GGTNACC 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 1514
EcoO65I GGTNACC 1 cut(s) 216
EcoT14I CCWWGG 2 cut(s) 398, 866
EcoT38I GRGCYC 1 cut(s) 1516
ErhI CCWWGG 2 cut(s) 398, 866
Esp3I CGTCTC 1 cut(s) 1495
FaeI CATG 8 cut(s) 55, 91, 544, 558, 593, 944, 1233, 1636
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 691, 723
FaqI GGGAC 1 cut(s) 939
FatI CATG 8 cut(s) 51, 87, 540, 554, 589, 940, 1229, 1632
FbaI TGATCA 1 cut(s) 1390
FblI GTMKAC 2 cut(s) 79, 1705
Fnu4HI GCNGC 2 cut(s) 1536, 1833
FokI GGATG 3 cut(s) 440, 1247, 1535
FriOI GRGCYC 1 cut(s) 1516
Fsp4HI GCNGC 2 cut(s) 1536, 1833
GlaI GCGC 1 cut(s) 1173
GluI GCNGC 2 cut(s) 1536, 1833
HaeIII GGCC 1 cut(s) 1734
HgaI GACGC 3 cut(s) 947, 1273, 1512
HhaI GCGC 1 cut(s) 1174
Hin1I GRCGYC 1 cut(s) 958
Hin1II CATG 8 cut(s) 55, 91, 544, 558, 593, 944, 1233, 1636
Hin6I GCGC 1 cut(s) 1172
HinP1I GCGC 1 cut(s) 1172
HincII GTYRAC 2 cut(s) 80, 875
HindII GTYRAC 2 cut(s) 80, 875
HindIII AAGCTT 6 cut(s) 180, 565, 803, 1106, 1745, 1874
HinfI GANTC 6 cut(s) 5, 324, 346, 551, 1039, 1355
HphI GGTGA 6 cut(s) 112, 416, 707, 871, 1036, 1061
Hpy166II GTNNAC 4 cut(s) 80, 875, 971, 1706
Hpy188I TCNGA 9 cut(s) 363, 493, 522, 903, 1166, 1342, 1455, 1647, 1672
Hpy188III TCNNGA 9 cut(s) 88, 170, 374, 422, 632, 835, 1043, 1517, 1659
Hpy8I GTNNAC 4 cut(s) 80, 875, 971, 1706
Hpy99I CGWCG 1 cut(s) 1289
HpyAV CCTTC 6 cut(s) 174, 1287, 1685, 1745, 1834, 1915
HpyCH4III ACNGT 4 cut(s) 65, 77, 1387, 1768
HpyCH4V TGCA 3 cut(s) 645, 1159, 1880
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 725
Hsp92I GRCGYC 1 cut(s) 958
Hsp92II CATG 8 cut(s) 55, 91, 544, 558, 593, 944, 1233, 1636
HspAI GCGC 1 cut(s) 1172
Ksp22I TGATCA 1 cut(s) 1390
Kzo9I GATC 3 cut(s) 25, 1390, 1650
LmnI GCTCC 3 cut(s) 537, 586, 718
Lsp1109I GCAGC 2 cut(s) 1522, 1819
LweI GCATC 2 cut(s) 320, 1146
MaeIII GTNAC 3 cut(s) 118, 216, 1300
MalI GATC 3 cut(s) 27, 1392, 1652
MboI GATC 3 cut(s) 25, 1390, 1650
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 1516
MluCI AATT 7 cut(s) 364, 620, 882, 946, 982, 1160, 1654
MlyI GAGTC 1 cut(s) 1048
MmeI TCCRAC 1 cut(s) 1440
MroXI GAANNNNTTC 1 cut(s) 597
MslI CAYNNNNRTG 2 cut(s) 756, 1398
MspCI CTTAAG 1 cut(s) 1424
Mva1269I GAATGC 1 cut(s) 1486
MvnI CGCG 1 cut(s) 1284
MwoI GCNNNNNNNGC 2 cut(s) 308, 725
NdeII GATC 3 cut(s) 25, 1390, 1650
NlaIII CATG 8 cut(s) 55, 91, 544, 558, 593, 944, 1233, 1636
NlaIV GGNNCC 1 cut(s) 989
NmuCI GTSAC 1 cut(s) 118
NspV TTCGAA 1 cut(s) 617
PagI TCATGA 1 cut(s) 87
PceI AGGCCT 1 cut(s) 1734
PcsI WCGNNNNNNNCGW 1 cut(s) 1304
PctI GAATGC 1 cut(s) 1486
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 5 cut(s) 5, 324, 346, 551, 1355
PkrI GCNGC 2 cut(s) 1537, 1834
PleI GAGTC 1 cut(s) 1047
PpsI GAGTC 1 cut(s) 1047
Psp124BI GAGCTC 1 cut(s) 1516
PspEI GGTNACC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 989
PstNI CAGNNNCTG 1 cut(s) 1320
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 3 cut(s) 1195, 1384, 1434
RsaNI GTAC 3 cut(s) 1194, 1383, 1433
RseI CAYNNNNRTG 2 cut(s) 756, 1398
SacI GAGCTC 1 cut(s) 1516
SalI GTCGAC 1 cut(s) 78
SatI GCNGC 2 cut(s) 1536, 1833
Sau3AI GATC 3 cut(s) 25, 1390, 1650
SchI GAGTC 1 cut(s) 1048
SduI GDGCHC 1 cut(s) 1516
SfaNI GCATC 2 cut(s) 320, 1146
SfuI TTCGAA 1 cut(s) 617
SmiMI CAYNNNNRTG 2 cut(s) 756, 1398
SmlI CTYRAG 2 cut(s) 422, 1424
SmoI CTYRAG 2 cut(s) 422, 1424
Sse9I AATT 7 cut(s) 364, 620, 882, 946, 982, 1160, 1654
SseBI AGGCCT 1 cut(s) 1734
SsiI CCGC 4 cut(s) 719, 1250, 1348, 1715
SstI GAGCTC 1 cut(s) 1516
StuI AGGCCT 1 cut(s) 1734
StyI CCWWGG 2 cut(s) 398, 866
TaaI ACNGT 4 cut(s) 65, 77, 1387, 1768
TaqI TCGA 5 cut(s) 79, 314, 617, 650, 1490
TasI AATT 7 cut(s) 364, 620, 882, 946, 982, 1160, 1654
TatI WGTACW 1 cut(s) 1382
TfiI GAWTC 5 cut(s) 5, 324, 346, 551, 1355
TscAI CASTG 3 cut(s) 70, 513, 664
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 2 cut(s) 1535, 1832
Tsp45I GTSAC 1 cut(s) 118
TspGWI ACGGA 4 cut(s) 327, 1583, 1607, 1919
TspRI CASTG 3 cut(s) 70, 513, 664
Vha464I CTTAAG 1 cut(s) 1424
XapI RAATTY 1 cut(s) 620
XbaI TCTAGA 1 cut(s) 1658
XmiI GTMKAC 2 cut(s) 79, 1705
XmnI GAANNNNTTC 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.