Involved in the biogenesis of the 60S ribosomal subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NOG1_N | PF17835 | 6 - 165 | 1.1e-60 | NOG1 N-terminal helical domain |
| FeoB_N | PF02421 | 170 - 320 | 6.5e-10 | Ferrous iron transport protein B |
| MMR_HSR1 | PF01926 | 171 - 290 | 1.5e-17 | 50S ribosome-binding GTPase |
| NOG1 | PF06858 | 236 - 292 | 1.2e-24 | Nucleolar GTP-binding protein 1 (NOG1) |
| NOGCT | PF08155 | 405 - 458 | 8.9e-28 | NOGCT (NUC087) domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1010 |
| AatII | GACGTC | 1 cut(s) | 585 |
| Acc65I | GGTACC | 1 cut(s) | 648 |
| AccB1I | GGYRCC | 1 cut(s) | 648 |
| AciI | CCGC | 5 cut(s) | 303, 373, 697, 1032, 1712 |
| AclWI | GGATC | 6 cut(s) | 32, 488, 784, 1358, 1637, 1704 |
| AcoI | YGGCCR | 1 cut(s) | 1875 |
| AcuI | CTGAAG | 3 cut(s) | 921, 957, 1499 |
| AcyI | GRCGYC | 1 cut(s) | 582 |
| AdeI | CACNNNGTG | 2 cut(s) | 1348, 1928 |
| AfaI | GTAC | 5 cut(s) | 158, 371, 508, 650, 1598 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 236, 536, 1844 |
| AflII | CTTAAG | 1 cut(s) | 386 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 81 |
| AjiI | CACGTC | 1 cut(s) | 1925 |
| AjnI | CCWGG | 2 cut(s) | 305, 1837 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 833, 865 |
| Alw21I | GWGCWC | 2 cut(s) | 416, 995 |
| Alw26I | GTCTC | 2 cut(s) | 131, 1905 |
| Alw44I | GTGCAC | 1 cut(s) | 412 |
| AlwI | GGATC | 6 cut(s) | 32, 488, 784, 1358, 1637, 1704 |
| Ama87I | CYCGRG | 2 cut(s) | 452, 668 |
| AoxI | GGCC | 6 cut(s) | 289, 683, 732, 1065, 1814, 1875 |
| ApaLI | GTGCAC | 1 cut(s) | 412 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 837, 869 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 50 |
| Asp718I | GGTACC | 1 cut(s) | 648 |
| AspS9I | GGNCC | 4 cut(s) | 684, 694, 733, 1660 |
| AsuC2I | CCSGG | 2 cut(s) | 669, 670 |
| AsuHPI | GGTGA | 6 cut(s) | 251, 371, 556, 592, 1853, 1943 |
| AvaI | CYCGRG | 2 cut(s) | 452, 668 |
| AvaII | GGWCC | 2 cut(s) | 694, 1660 |
| AxyI | CCTNAGG | 1 cut(s) | 1164 |
| BaeGI | GKGCMC | 1 cut(s) | 416 |
| BanI | GGYRCC | 1 cut(s) | 648 |
| BauI | CACGAG | 1 cut(s) | 1131 |
| BbsI | GAAGAC | 4 cut(s) | 953, 1320, 1547, 1641 |
| Bbv12I | GWGCWC | 2 cut(s) | 416, 995 |
| BccI | CCATC | 5 cut(s) | 234, 497, 744, 1331, 1441 |
| BciT130I | CCWGG | 2 cut(s) | 307, 1839 |
| BcnI | CCSGG | 2 cut(s) | 669, 670 |
| BcoDI | GTCTC | 2 cut(s) | 131, 1905 |
| BfaI | CTAG | 5 cut(s) | 438, 477, 1269, 1680, 1782 |
| BfrI | CTTAAG | 1 cut(s) | 386 |
| BglII | AGATCT | 1 cut(s) | 1802 |
| BlpI | GCTNAGC | 1 cut(s) | 798 |
| Bme1390I | CCNGG | 4 cut(s) | 307, 669, 670, 1839 |
| Bme18I | GGWCC | 2 cut(s) | 694, 1660 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 81 |
| BmeT110I | CYCGRG | 2 cut(s) | 452, 668 |
| BmgBI | CACGTC | 1 cut(s) | 1925 |
| BmgT120I | GGNCC | 4 cut(s) | 684, 694, 733, 1660 |
| BmiI | GGNNCC | 3 cut(s) | 650, 1109, 1151 |
| BmrFI | CCNGG | 4 cut(s) | 307, 669, 670, 1839 |
| BmsI | GCATC | 4 cut(s) | 831, 870, 1699, 1711 |
| BpiI | GAAGAC | 4 cut(s) | 953, 1320, 1547, 1641 |
| BpmI | CTGGAG | 2 cut(s) | 1196, 1275 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1188 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 798 |
| BpuEI | CTTGAG | 2 cut(s) | 335, 1520 |
| BpuMI | CCSGG | 2 cut(s) | 669, 670 |
| Bsa29I | ATCGAT | 2 cut(s) | 492, 1699 |
| BsaHI | GRCGYC | 1 cut(s) | 582 |
| BsaJI | CCNNGG | 6 cut(s) | 330, 667, 668, 729, 849, 885 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1242, 1272 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 236, 536, 1844 |
| Bse21I | CCTNAGG | 1 cut(s) | 1164 |
| Bse3DI | GCAATG | 3 cut(s) | 960, 1209, 1662 |
| BseBI | CCWGG | 2 cut(s) | 307, 1839 |
| BseCI | ATCGAT | 2 cut(s) | 492, 1699 |
| BseDI | CCNNGG | 6 cut(s) | 330, 667, 668, 729, 849, 885 |
| BseGI | GGATG | 3 cut(s) | 63, 226, 1474 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 236, 536, 1844 |
| BseMI | GCAATG | 3 cut(s) | 960, 1209, 1662 |
| BseRI | GAGGAG | 1 cut(s) | 1253 |
| BseSI | GKGCMC | 1 cut(s) | 416 |
| BseYI | CCCAGC | 1 cut(s) | 1421 |
| BsgI | GTGCAG | 2 cut(s) | 736, 1806 |
| BshFI | GGCC | 6 cut(s) | 291, 685, 734, 1067, 1816, 1877 |
| BshNI | GGYRCC | 1 cut(s) | 648 |
| BshVI | ATCGAT | 2 cut(s) | 492, 1699 |
| BsiHKAI | GWGCWC | 2 cut(s) | 416, 995 |
| BsiHKCI | CYCGRG | 2 cut(s) | 452, 668 |
| BsiSI | CCGG | 1 cut(s) | 669 |
| BslFI | GGGAC | 2 cut(s) | 814, 1650 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 236, 536, 1844 |
| BsmAI | GTCTC | 2 cut(s) | 131, 1905 |
| BsmBI | CGTCTC | 1 cut(s) | 131 |
| BsmFI | GGGAC | 2 cut(s) | 814, 1650 |
| BsmI | GAATGC | 2 cut(s) | 1033, 1924 |
| BsnI | GGCC | 6 cut(s) | 291, 685, 734, 1067, 1816, 1877 |
| BsoBI | CYCGRG | 2 cut(s) | 452, 668 |
| Bsp1286I | GDGCHC | 2 cut(s) | 416, 995 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 798 |
| Bsp19I | CCATGG | 1 cut(s) | 885 |
| BspACI | CCGC | 5 cut(s) | 303, 373, 697, 1032, 1712 |
| BspANI | GGCC | 6 cut(s) | 291, 685, 734, 1067, 1816, 1877 |
| BspDI | ATCGAT | 2 cut(s) | 492, 1699 |
| BspLI | GGNNCC | 3 cut(s) | 650, 1109, 1151 |
| BspPI | GGATC | 6 cut(s) | 32, 488, 784, 1358, 1637, 1704 |
| BspT107I | GGYRCC | 1 cut(s) | 648 |
| BspTI | CTTAAG | 1 cut(s) | 386 |
| BsrDI | GCAATG | 3 cut(s) | 960, 1209, 1662 |
| BssECI | CCNNGG | 6 cut(s) | 330, 667, 668, 729, 849, 885 |
| BssNI | GRCGYC | 1 cut(s) | 582 |
| BssSI | CACGAG | 1 cut(s) | 1131 |
| BssT1I | CCWWGG | 4 cut(s) | 330, 729, 849, 885 |
| Bst2BI | CACGAG | 1 cut(s) | 1131 |
| Bst2UI | CCWGG | 2 cut(s) | 307, 1839 |
| Bst4CI | ACNGT | 9 cut(s) | 31, 97, 125, 418, 511, 1546, 1567, 1664, 1749 |
| Bst6I | CTCTTC | 3 cut(s) | 918, 1230, 1685 |
| BstACI | GRCGYC | 1 cut(s) | 582 |
| BstAFI | CTTAAG | 1 cut(s) | 386 |
| BstC8I | GCNNGC | 3 cut(s) | 282, 804, 1386 |
| BstDSI | CCRYGG | 1 cut(s) | 885 |
| BstEII | GGTNACC | 2 cut(s) | 524, 562 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1842 |
| BstF5I | GGATG | 3 cut(s) | 63, 226, 1474 |
| BstMAI | GTCTC | 2 cut(s) | 131, 1905 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 463, 803, 959, 1193, 1480, 1483 |
| BstNI | CCWGG | 2 cut(s) | 307, 1839 |
| BstNSI | RCATGY | 1 cut(s) | 1038 |
| BstPI | GGTNACC | 2 cut(s) | 524, 562 |
| BstSCI | CCNGG | 4 cut(s) | 305, 667, 668, 1837 |
| BstSLI | GKGCMC | 1 cut(s) | 416 |
| BstV2I | GAAGAC | 4 cut(s) | 953, 1320, 1547, 1641 |
| BstX2I | RGATCY | 1 cut(s) | 1802 |
| BstYI | RGATCY | 1 cut(s) | 1802 |
| Bsu15I | ATCGAT | 2 cut(s) | 492, 1699 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1164 |
| BsuRI | GGCC | 6 cut(s) | 291, 685, 734, 1067, 1816, 1877 |
| BsuTUI | ATCGAT | 2 cut(s) | 492, 1699 |
| BtgI | CCRYGG | 1 cut(s) | 885 |
| BtrI | CACGTC | 1 cut(s) | 1925 |
| BtsCI | GGATG | 3 cut(s) | 63, 226, 1474 |
| BtsI | GCAGTG | 1 cut(s) | 723 |
| BtsIMutI | CAGTG | 2 cut(s) | 414, 723 |
| Cac8I | GCNNGC | 3 cut(s) | 282, 804, 1386 |
| Cfr13I | GGNCC | 4 cut(s) | 684, 694, 733, 1660 |
| Cfr9I | CCCGGG | 1 cut(s) | 668 |
| ClaI | ATCGAT | 2 cut(s) | 492, 1699 |
| CseI | GACGC | 1 cut(s) | 71 |
| Csp6I | GTAC | 5 cut(s) | 157, 370, 507, 649, 1597 |
| CviQI | GTAC | 5 cut(s) | 157, 370, 507, 649, 1597 |
| DraIII | CACNNNGTG | 2 cut(s) | 1348, 1928 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1010 |
| DriI | GACNNNNNGTC | 1 cut(s) | 81 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1010 |
| EaeI | YGGCCR | 1 cut(s) | 1875 |
| Eam1104I | CTCTTC | 3 cut(s) | 918, 1230, 1685 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 81 |
| EarI | CTCTTC | 3 cut(s) | 918, 1230, 1685 |
| Eco130I | CCWWGG | 4 cut(s) | 330, 729, 849, 885 |
| Eco147I | AGGCCT | 1 cut(s) | 1816 |
| Eco32I | GATATC | 1 cut(s) | 1797 |
| Eco47I | GGWCC | 2 cut(s) | 694, 1660 |
| Eco57I | CTGAAG | 3 cut(s) | 921, 957, 1499 |
| Eco81I | CCTNAGG | 1 cut(s) | 1164 |
| Eco88I | CYCGRG | 2 cut(s) | 452, 668 |
| Eco91I | GGTNACC | 2 cut(s) | 524, 562 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1842 |
| EcoO109I | RGGNCCY | 1 cut(s) | 684 |
| EcoO65I | GGTNACC | 2 cut(s) | 524, 562 |
| EcoRII | CCWGG | 2 cut(s) | 305, 1837 |
| EcoRV | GATATC | 1 cut(s) | 1797 |
| EcoT14I | CCWWGG | 4 cut(s) | 330, 729, 849, 885 |
| ErhI | CCWWGG | 4 cut(s) | 330, 729, 849, 885 |
| Esp3I | CGTCTC | 1 cut(s) | 131 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 818, 850, 1138, 1170 |
| FaqI | GGGAC | 2 cut(s) | 814, 1650 |
| FauI | CCCGC | 1 cut(s) | 1705 |
| FokI | GGATG | 3 cut(s) | 50, 213, 1481 |
| FspBI | CTAG | 5 cut(s) | 438, 477, 1269, 1680, 1782 |
| GsaI | CCCAGC | 1 cut(s) | 1425 |
| GsuI | CTGGAG | 2 cut(s) | 1196, 1275 |
| HaeIII | GGCC | 6 cut(s) | 291, 685, 734, 1067, 1816, 1877 |
| HapII | CCGG | 1 cut(s) | 669 |
| HgaI | GACGC | 1 cut(s) | 71 |
| Hin1I | GRCGYC | 1 cut(s) | 582 |
| HincII | GTYRAC | 2 cut(s) | 58, 580 |
| HindII | GTYRAC | 2 cut(s) | 58, 580 |
| HindIII | AAGCTT | 2 cut(s) | 278, 1460 |
| HinfI | GANTC | 6 cut(s) | 76, 362, 429, 1330, 1848, 1856 |
| HpaII | CCGG | 1 cut(s) | 669 |
| HphI | GGTGA | 6 cut(s) | 251, 371, 556, 592, 1853, 1943 |
| Hpy166II | GTNNAC | 7 cut(s) | 58, 103, 159, 298, 414, 580, 1599 |
| Hpy8I | GTNNAC | 7 cut(s) | 58, 103, 159, 298, 414, 580, 1599 |
| Hpy99I | CGWCG | 1 cut(s) | 1929 |
| HpyAV | CCTTC | 6 cut(s) | 40, 495, 1001, 1303, 1400, 1838 |
| HpyCH4III | ACNGT | 9 cut(s) | 31, 97, 125, 418, 511, 1546, 1567, 1664, 1749 |
| HpyCH4IV | ACGT | 4 cut(s) | 582, 1399, 1731, 1924 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 463, 803, 959, 1193, 1480, 1483 |
| HpySE526I | ACGT | 4 cut(s) | 582, 1399, 1731, 1924 |
| Hsp92I | GRCGYC | 1 cut(s) | 582 |
| KpnI | GGTACC | 1 cut(s) | 652 |
| LmnI | GCTCC | 3 cut(s) | 959, 1155, 1250 |
| LweI | GCATC | 4 cut(s) | 831, 870, 1699, 1711 |
| MaeI | CTAG | 5 cut(s) | 438, 477, 1269, 1680, 1782 |
| MaeII | ACGT | 4 cut(s) | 582, 1399, 1731, 1924 |
| MaeIII | GTNAC | 5 cut(s) | 110, 524, 562, 785, 1340 |
| MflI | RGATCY | 1 cut(s) | 1802 |
| MhlI | GDGCHC | 2 cut(s) | 416, 995 |
| MluCI | AATT | 1 cut(s) | 13 |
| MlyI | GAGTC | 2 cut(s) | 70, 1850 |
| MmeI | TCCRAC | 1 cut(s) | 1374 |
| MroXI | GAANNNNTTC | 1 cut(s) | 50 |
| MseI | TTAA | 5 cut(s) | 120, 153, 387, 1521, 1881 |
| MslI | CAYNNNNRTG | 2 cut(s) | 710, 1019 |
| MspA1I | CMGCKG | 3 cut(s) | 375, 1199, 1477 |
| MspCI | CTTAAG | 1 cut(s) | 386 |
| MspI | CCGG | 1 cut(s) | 669 |
| MspR9I | CCNGG | 4 cut(s) | 307, 669, 670, 1839 |
| Mva1269I | GAATGC | 2 cut(s) | 1033, 1924 |
| MvaI | CCWGG | 2 cut(s) | 307, 1839 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 463, 803, 959, 1193, 1480, 1483 |
| NciI | CCSGG | 2 cut(s) | 669, 670 |
| NcoI | CCATGG | 1 cut(s) | 885 |
| NlaIV | GGNNCC | 3 cut(s) | 650, 1109, 1151 |
| NmuCI | GTSAC | 2 cut(s) | 562, 1340 |
| NspI | RCATGY | 1 cut(s) | 1038 |
| PaeR7I | CTCGAG | 1 cut(s) | 452 |
| PceI | AGGCCT | 1 cut(s) | 1816 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 79, 1961 |
| PctI | GAATGC | 2 cut(s) | 1033, 1924 |
| PdmI | GAANNNNTTC | 1 cut(s) | 50 |
| PfeI | GAWTC | 4 cut(s) | 362, 429, 1330, 1848 |
| PleI | GAGTC | 2 cut(s) | 70, 1850 |
| PpsI | GAGTC | 2 cut(s) | 70, 1850 |
| Psp6I | CCWGG | 2 cut(s) | 305, 1837 |
| PspEI | GGTNACC | 2 cut(s) | 524, 562 |
| PspFI | CCCAGC | 1 cut(s) | 1421 |
| PspGI | CCWGG | 2 cut(s) | 305, 1837 |
| PspN4I | GGNNCC | 3 cut(s) | 650, 1109, 1151 |
| PspPI | GGNCC | 4 cut(s) | 684, 694, 733, 1660 |
| PsuI | RGATCY | 1 cut(s) | 1802 |
| PvuII | CAGCTG | 2 cut(s) | 1199, 1477 |
| RsaI | GTAC | 5 cut(s) | 158, 371, 508, 650, 1598 |
| RsaNI | GTAC | 5 cut(s) | 157, 370, 507, 649, 1597 |
| RseI | CAYNNNNRTG | 2 cut(s) | 710, 1019 |
| SaqAI | TTAA | 5 cut(s) | 120, 153, 387, 1521, 1881 |
| Sau96I | GGNCC | 4 cut(s) | 684, 694, 733, 1660 |
| SchI | GAGTC | 2 cut(s) | 70, 1850 |
| ScrFI | CCNGG | 4 cut(s) | 307, 669, 670, 1839 |
| SduI | GDGCHC | 2 cut(s) | 416, 995 |
| SfaNI | GCATC | 4 cut(s) | 831, 870, 1699, 1711 |
| Sfr274I | CTCGAG | 1 cut(s) | 452 |
| SinI | GGWCC | 2 cut(s) | 694, 1660 |
| SlaI | CTCGAG | 1 cut(s) | 452 |
| SmaI | CCCGGG | 1 cut(s) | 670 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 710, 1019 |
| SmlI | CTYRAG | 4 cut(s) | 350, 386, 452, 1535 |
| SmoI | CTYRAG | 4 cut(s) | 350, 386, 452, 1535 |
| Sse9I | AATT | 1 cut(s) | 13 |
| SseBI | AGGCCT | 1 cut(s) | 1816 |
| SsiI | CCGC | 5 cut(s) | 303, 373, 697, 1032, 1712 |
| SspMI | CTAG | 5 cut(s) | 438, 477, 1269, 1680, 1782 |
| StuI | AGGCCT | 1 cut(s) | 1816 |
| StyD4I | CCNGG | 4 cut(s) | 305, 667, 668, 1837 |
| StyI | CCWWGG | 4 cut(s) | 330, 729, 849, 885 |
| TaaI | ACNGT | 9 cut(s) | 31, 97, 125, 418, 511, 1546, 1567, 1664, 1749 |
| TaiI | ACGT | 4 cut(s) | 585, 1402, 1734, 1927 |
| TaqI | TCGA | 9 cut(s) | 453, 492, 742, 765, 1335, 1699, 1751, 1793, 1811 |
| TaqII | GACCGA | 1 cut(s) | 1978 |
| TasI | AATT | 1 cut(s) | 13 |
| TatI | WGTACW | 2 cut(s) | 156, 1596 |
| TauI | GCSGC | 1 cut(s) | 1034 |
| TfiI | GAWTC | 4 cut(s) | 362, 429, 1330, 1848 |
| Tru1I | TTAA | 5 cut(s) | 120, 153, 387, 1521, 1881 |
| Tru9I | TTAA | 5 cut(s) | 120, 153, 387, 1521, 1881 |
| TscAI | CASTG | 2 cut(s) | 421, 730 |
| TseFI | GTSAC | 2 cut(s) | 562, 1340 |
| Tsp45I | GTSAC | 2 cut(s) | 562, 1340 |
| TspDTI | ATGAA | 9 cut(s) | 239, 569, 854, 944, 959, 1088, 1317, 1348, 1842 |
| TspGWI | ACGGA | 3 cut(s) | 88, 119, 1635 |
| TspMI | CCCGGG | 1 cut(s) | 668 |
| TspRI | CASTG | 2 cut(s) | 421, 730 |
| Vha464I | CTTAAG | 1 cut(s) | 386 |
| VneI | GTGCAC | 1 cut(s) | 412 |
| VpaK11BI | GGWCC | 2 cut(s) | 694, 1660 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1842 |
| XbaI | TCTAGA | 2 cut(s) | 1679, 1781 |
| XceI | RCATGY | 1 cut(s) | 1038 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 233 |
| XhoI | CTCGAG | 1 cut(s) | 452 |
| XmaI | CCCGGG | 1 cut(s) | 668 |
| XmnI | GAANNNNTTC | 1 cut(s) | 50 |
| XspI | CTAG | 5 cut(s) | 438, 477, 1269, 1680, 1782 |
| ZraI | GACGTC | 1 cut(s) | 583 |