Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001573

Physical Location & Seq

Genomic Coordinates Reverse (-)

36848873 .. 36849809

Gene Structure 937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG332500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCAAGGCTACCTTCAATTGACCCAAACACCAGGACAATATTGATTTGCGGCTATCCCAATGTTGGAAAGAGTTCATTCATCAACAAGATCACCAGGGCCGATGTTGATGTCCAGCCTCATGCTTTTACTACCAAGTCACTCTTTGTGGGGCATACAGAATATAAGTACCTGAGGTACCAGGTTATTGATACACCTGGGATTTTGGACCGACCATTTGAAGACTGTAACATTATTGAGATGTGCAGCATCACAGCATTGGCACATGGTCTTGTGGTTATACGTACCATTGCCCAACAAGCAGCCCTATTTCACAGCATTAAGTCTCTGTTCATGAACAAACCATTAATTATAGTCTGCAACAAGACTGATTTGCAGCCATTGGAGGGCATATCTGAGGAAGACATGAAGTCGGTCACAGAGATGAAAGCTGAAGCTGTGAAGACTCTGCTTGGTCAAGGAGGCGAGGCTACAAATGATGATGGGGTACTCTTCACCATGAGCACTTTGACCGAGGAGGGGGTTATTTCCGTAAAGAATGCAGCTTGTGAGAGGTTATTGAATCAGAGAGTTGAGTTGAAGATGAAATCTAAAAAGATAAATGATTGTTTAAATCGTTTTCATGTTGCAATCCCAAAGCCAGGTGACCAAAAGGAAAGGCCTCCATGTATACATCAGGCTGTCTTAGAAGCCAAGGCTAAGCAAGCAGCAGAGAAGGAAAAGAGAAATACTGAAAAGGATTTGGAGAATGAAAATGGTGGTGCTGGTGTATACTCTGCCAGTTTGAAGAAGAATTATATCCTTGCTCATGATGAGTGGAAAGAAGACATCATGCCTGAAATTCTTGATAAGCACAATGTATTTGACTTCATTGATCCCGACATTTTGAATAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1 NOGCT

Protein Analysis

299

Amino Acids

33.49

Weight (kDa)

6.1

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FeoB_N	PF02421	13 - 148	7.5e-10	Ferrous iron transport protein B
MMR_HSR1	PF01926	14 - 122	5.8e-17	50S ribosome-binding GTPase
NOG1	PF06858	96 - 124	2.4e-07	Nucleolar GTP-binding protein 1 (NOG1)
NOGCT	PF08155	242 - 295	1.2e-24	NOGCT (NUC087) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10300 AT1G10300 AT1G10300 AT1G50920
fragaria_vesca	FvH4_3g28930 FvH4_3g28930 FvH4_6g37740
malus_domestica	MD06G1031200.v1.1 MD11G1222700.v1.1 MD16G1277600.v1.1
prunus_persica	Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.4G247400_v2.0.a1 Prupe.5G045700_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.6G149400_v2.0.a1
pyrus_communis	pycom03g13360 pycom06g02600 pycom11g16960 pycom11g19650
rosa_chinensis	RchiOBHm_Chr3g0491451 RchiOBHm_Chr5g0051831 RchiOBHm_Chr5g0051911
rosa_laevigata	RLG00000034859 RLG00000034861
rosa_multiflora	Rmu_co8440613.1_g000002 Rmu_sc0001267.1_g000040
rosa_roxburghii	Rroxscaffold_1G00027370 Rroxscaffold_1G00027400
rosa_rugosa	Rorug03G0248800 Rorug03G0248800 Rorug03G0249700 Rorug05G0276600 Rorug05G0276700 Rorug05G0276800
rosa_samantha	Rh3AG298700 Rh3DG332500 Rh3DG333200 Rh5AG348600 Rh5AG348900 Rh5BG359100 Rh5BG359200 Rh5BG359900 Rh5CG384700 Rh5CG384900 Rh5DG374600
rosa_wichuraiana	Rw3G026370 Rw5G032900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	177
AccI	GTMKAC	2 cut(s)	670, 771
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	869
AcsI	RAATTY	1 cut(s)	840
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	4 cut(s)	170, 179, 286, 489
AfiI	CCNNNNNNNGG	4 cut(s)	65, 386, 519, 641
AgsI	TTSAA	6 cut(s)	18, 221, 562, 580, 787, 889
AhdI	GACNNNNNGTC	1 cut(s)	409
AjnI	CCWGG	5 cut(s)	32, 95, 180, 196, 640
AluBI	AGCT	3 cut(s)	431, 437, 545
AluI	AGCT	3 cut(s)	431, 437, 545
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	869
AoxI	GGCC	2 cut(s)	99, 659
ApeKI	GCWGC	5 cut(s)	246, 302, 376, 542, 707
ApoI	RAATTY	1 cut(s)	840
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AseI	ATTAAT	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	73
Asp718I	GGTACC	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	99, 208
AsuHPI	GGTGA	3 cut(s)	85, 487, 656
AvaII	GGWCC	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	177
BbsI	GAAGAC	4 cut(s)	228, 408, 449, 831
Bbv12I	GWGCWC	1 cut(s)	506
BbvI	GCAGC	5 cut(s)	258, 314, 388, 554, 719
BccI	CCATC	1 cut(s)	476
BciT130I	CCWGG	5 cut(s)	34, 97, 182, 198, 642
BcoDI	GTCTC	1 cut(s)	330
BisI	GCNGC	6 cut(s)	52, 247, 303, 377, 543, 708
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	6 cut(s)	53, 248, 304, 378, 544, 709
Bme1390I	CCNGG	5 cut(s)	34, 97, 182, 198, 642
Bme18I	GGWCC	1 cut(s)	208
BmeRI	GACNNNNNGTC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	99, 208
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	5 cut(s)	34, 97, 182, 198, 642
BmsI	GCATC	1 cut(s)	258
BpiI	GAAGAC	4 cut(s)	228, 408, 449, 831
Bpu1102I	GCTNAGC	1 cut(s)	699
BsaAI	YACGTR	1 cut(s)	284
BsaJI	CCNNGG	4 cut(s)	96, 197, 513, 693
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 386, 519, 641
Bse1I	ACTGG	1 cut(s)	780
Bse21I	CCTNAGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	5 cut(s)	34, 97, 182, 198, 642
BseDI	CCNNGG	4 cut(s)	96, 197, 513, 693
BseLI	CCNNNNNNNGG	4 cut(s)	65, 386, 519, 641
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	164, 387
BseNI	ACTGG	1 cut(s)	780
BseRI	GAGGAG	1 cut(s)	530
BseXI	GCAGC	5 cut(s)	258, 314, 388, 554, 719
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	101, 661
BshNI	GGYRCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	506
BslI	CCNNNNNNNGG	4 cut(s)	65, 386, 519, 641
BsmAI	GTCTC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	101, 661
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	2 cut(s)	90, 874
Bsp1720I	GCTNAGC	1 cut(s)	699
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	101, 661
BspCNI	CTCAG	2 cut(s)	165, 388
BspHI	TCATGA	2 cut(s)	333, 808
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	869
BspT107I	GGYRCC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	780
BssECI	CCNNGG	4 cut(s)	96, 197, 513, 693
BssMI	GATC	2 cut(s)	90, 874
BssNAI	GTATAC	2 cut(s)	671, 772
BssT1I	CCWWGG	1 cut(s)	693
Bst1107I	GTATAC	2 cut(s)	671, 772
Bst2UI	CCWGG	5 cut(s)	34, 97, 182, 198, 642
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	4 cut(s)	173, 396, 685, 699
BstEII	GGTNACC	1 cut(s)	644
BstKTI	GATC	2 cut(s)	93, 877
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	2 cut(s)	90, 874
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 704
BstNI	CCWGG	5 cut(s)	34, 97, 182, 198, 642
BstPI	GGTNACC	1 cut(s)	644
BstSCI	CCNGG	5 cut(s)	32, 95, 180, 196, 640
BstSNI	TACGTA	1 cut(s)	284
BstV1I	GCAGC	5 cut(s)	258, 314, 388, 554, 719
BstV2I	GAAGAC	4 cut(s)	228, 408, 449, 831
BstZ17I	GTATAC	2 cut(s)	671, 772
Bsu36I	CCTNAGG	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	101, 661
Cac8I	GCNNGC	1 cut(s)	705
CciI	TCATGA	2 cut(s)	333, 808
Cfr13I	GGNCC	2 cut(s)	99, 208
CsiI	ACCWGGT	1 cut(s)	180
Csp6I	GTAC	4 cut(s)	169, 178, 285, 488
CviAII	CATG	9 cut(s)	122, 266, 334, 406, 499, 623, 666, 809, 832
CviQI	GTAC	4 cut(s)	169, 178, 285, 488
DdeI	CTNAG	4 cut(s)	173, 396, 685, 699
DpnI	GATC	2 cut(s)	92, 876
DpnII	GATC	2 cut(s)	90, 874
DraI	TTTAAA	1 cut(s)	612
DriI	GACNNNNNGTC	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	497
Eam1105I	GACNNNNNGTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	497
Eco105I	TACGTA	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	693
Eco147I	AGGCCT	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	453
Eco81I	CCTNAGG	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	644
EcoO65I	GGTNACC	1 cut(s)	644
EcoRII	CCWGG	5 cut(s)	32, 95, 180, 196, 640
EcoT14I	CCWWGG	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	9 cut(s)	125, 269, 337, 409, 502, 626, 669, 812, 835
FalI	AAGNNNNNCTT	3 cut(s)	30, 128, 160
FatI	CATG	9 cut(s)	121, 265, 333, 405, 498, 622, 665, 808, 831
FblI	GTMKAC	2 cut(s)	670, 771
Fnu4HI	GCNGC	6 cut(s)	52, 247, 303, 377, 543, 708
Fsp4HI	GCNGC	6 cut(s)	52, 247, 303, 377, 543, 708
GluI	GCNGC	6 cut(s)	52, 247, 303, 377, 543, 708
HaeIII	GGCC	2 cut(s)	101, 661
Hin1II	CATG	9 cut(s)	125, 269, 337, 409, 502, 626, 669, 812, 835
HinfI	GANTC	2 cut(s)	445, 562
HphI	GGTGA	3 cut(s)	85, 487, 656
Hpy166II	GTNNAC	2 cut(s)	671, 772
Hpy188I	TCNGA	3 cut(s)	397, 567, 899
Hpy188III	TCNNGA	4 cut(s)	334, 809, 845, 878
Hpy8I	GTNNAC	2 cut(s)	671, 772
HpyAV	CCTTC	2 cut(s)	24, 709
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	246, 360, 376, 542, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 704
HpyF3I	CTNAG	4 cut(s)	173, 396, 685, 699
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	9 cut(s)	125, 269, 337, 409, 502, 626, 669, 812, 835
KpnI	GGTACC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	90, 874
Lsp1109I	GCAGC	5 cut(s)	258, 314, 388, 554, 719
LweI	GCATC	1 cut(s)	258
MabI	ACCWGGT	1 cut(s)	180
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	4 cut(s)	138, 227, 415, 644
MalI	GATC	2 cut(s)	92, 876
MboI	GATC	2 cut(s)	90, 874
MboII	GAAGA	8 cut(s)	233, 413, 454, 484, 592, 799, 802, 836
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	4 cut(s)	18, 348, 793, 840
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	73
MseI	TTAA	3 cut(s)	321, 347, 611
MslI	CAYNNNNRTG	1 cut(s)	422
MspR9I	CCNGG	5 cut(s)	34, 97, 182, 198, 642
MunI	CAATTG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	5 cut(s)	34, 97, 182, 198, 642
MwoI	GCNNNNNNNGC	2 cut(s)	299, 704
NdeII	GATC	2 cut(s)	90, 874
NlaIII	CATG	9 cut(s)	125, 269, 337, 409, 502, 626, 669, 812, 835
NlaIV	GGNNCC	1 cut(s)	179
NmuCI	GTSAC	3 cut(s)	138, 415, 644
PagI	TCATGA	2 cut(s)	333, 808
PceI	AGGCCT	1 cut(s)	661
PctI	GAATGC	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	562
PkrI	GCNGC	6 cut(s)	53, 248, 304, 378, 544, 709
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Ppu21I	YACGTR	1 cut(s)	284
PshBI	ATTAAT	1 cut(s)	347
Psp6I	CCWGG	5 cut(s)	32, 95, 180, 196, 640
PspEI	GGTNACC	1 cut(s)	644
PspGI	CCWGG	5 cut(s)	32, 95, 180, 196, 640
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	99, 208
RsaI	GTAC	4 cut(s)	170, 179, 286, 489
RsaNI	GTAC	4 cut(s)	169, 178, 285, 488
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	321, 347, 611
SatI	GCNGC	6 cut(s)	52, 247, 303, 377, 543, 708
Sau3AI	GATC	2 cut(s)	90, 874
Sau96I	GGNCC	2 cut(s)	99, 208
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	5 cut(s)	34, 97, 182, 198, 642
SduI	GDGCHC	1 cut(s)	506
SexAI	ACCWGGT	1 cut(s)	180
SfaNI	GCATC	1 cut(s)	258
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	422
SnaBI	TACGTA	1 cut(s)	284
Sse9I	AATT	4 cut(s)	18, 348, 793, 840
SseBI	AGGCCT	1 cut(s)	661
SsiI	CCGC	1 cut(s)	51
SspI	AATATT	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	5 cut(s)	32, 95, 180, 196, 640
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	286
TaqII	GACCGA	3 cut(s)	225, 403, 527
TasI	AATT	4 cut(s)	18, 348, 793, 840
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	3 cut(s)	321, 347, 611
Tru9I	TTAA	3 cut(s)	321, 347, 611
TseFI	GTSAC	3 cut(s)	138, 415, 644
TseI	GCWGC	5 cut(s)	246, 302, 376, 542, 707
Tsp45I	GTSAC	3 cut(s)	138, 415, 644
TspGWI	ACGGA	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	347
XapI	RAATTY	1 cut(s)	840
XmiI	GTMKAC	2 cut(s)	670, 771
XmnI	GAANNNNTTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.