Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001573

Physical Location & Seq

Genomic Coordinates Reverse (-)

3126569 .. 3126871

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCAAATGTATCAAGCTCTTGGCCGCATATGCACAGTTATAAAGAGGATTGGTCCTAGTTTAGCTTACCTGGAACAAATTAGGCAACACATGGCAAGGCTACCTTCAATTGACCCTCATACCAGGACAGTATTGATTTGTGATTATCCAAATGTCGGAAAGAGTTCATTCATTAACAAGATCACTAGGGCTGATGTGGATGTCCAACCCTATGCTTTTACGACTAAGTCACTCTTCGTGGGACACACAGATTGTAAATACCTGAGGTACCAGGTAATTGATACACCAGGGATCTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1 NOGCT

Protein Analysis

101

Amino Acids

11.42

Weight (kDa)

9.12

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NOG1_N	PF17835	3 - 38	1e-08	NOG1 N-terminal helical domain
FeoB_N	PF02421	43 - 98	4.1e-07	Ferrous iron transport protein B
MMR_HSR1	PF01926	44 - 99	4.2e-13	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10300 AT1G10300 AT1G10300 AT1G50920
fragaria_vesca	FvH4_3g28930 FvH4_3g28930 FvH4_6g37740
malus_domestica	MD06G1031200.v1.1 MD11G1222700.v1.1 MD16G1277600.v1.1
prunus_persica	Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.4G247400_v2.0.a1 Prupe.5G045700_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.6G149400_v2.0.a1
pyrus_communis	pycom03g13360 pycom06g02600 pycom11g16960 pycom11g19650
rosa_chinensis	RchiOBHm_Chr3g0491451 RchiOBHm_Chr5g0051831 RchiOBHm_Chr5g0051911
rosa_laevigata	RLG00000034859 RLG00000034861
rosa_multiflora	Rmu_co8440613.1_g000002 Rmu_sc0001267.1_g000040
rosa_roxburghii	Rroxscaffold_1G00027370 Rroxscaffold_1G00027400
rosa_rugosa	Rorug03G0248800 Rorug03G0248800 Rorug03G0249700 Rorug05G0276600 Rorug05G0276700 Rorug05G0276800
rosa_samantha	Rh3AG298700 Rh3DG332500 Rh3DG333200 Rh5AG348600 Rh5AG348900 Rh5BG359100 Rh5BG359200 Rh5BG359900 Rh5CG384700 Rh5CG384900 Rh5DG374600
rosa_wichuraiana	Rw3G026370 Rw5G032900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	41
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	267
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	22
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	108
AjnI	CCWGG	4 cut(s)	69, 122, 270, 286
AluBI	AGCT	2 cut(s)	17, 65
AluI	AGCT	2 cut(s)	17, 65
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	163
Asp718I	GGTACC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
AxyI	CCTNAGG	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	267
BciT130I	CCWGG	4 cut(s)	71, 124, 272, 288
BfaI	CTAG	2 cut(s)	57, 186
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	4 cut(s)	71, 124, 272, 288
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	4 cut(s)	71, 124, 272, 288
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse21I	CCTNAGG	1 cut(s)	263
BseBI	CCWGG	4 cut(s)	71, 124, 272, 288
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	180, 291
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	180, 291
Bst2UI	CCWGG	4 cut(s)	71, 124, 272, 288
Bst4CI	ACNGT	2 cut(s)	37, 130
Bst6I	CTCTTC	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	225, 263
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	2 cut(s)	183, 294
BstMBI	GATC	2 cut(s)	180, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	4 cut(s)	71, 124, 272, 288
BstSCI	CCNGG	4 cut(s)	69, 122, 270, 286
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	53
CsiI	ACCWGGT	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	5 cut(s)	17, 24, 65, 100, 191
CviKI_1	RGCY	5 cut(s)	17, 24, 65, 100, 191
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	225, 263
DpnI	GATC	2 cut(s)	182, 293
DpnII	GATC	2 cut(s)	180, 291
EaeI	YGGCCR	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	53
Eco81I	CCTNAGG	1 cut(s)	263
EcoRII	CCWGG	4 cut(s)	69, 122, 270, 286
FaeI	CATG	1 cut(s)	94
FaiI	YATR	6 cut(s)	29, 31, 41, 92, 120, 213
FalI	AAGNNNNNCTT	4 cut(s)	88, 120, 218, 250
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	1 cut(s)	90
FauNDI	CATATG	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	2 cut(s)	57, 186
GluI	GCNGC	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	2 cut(s)	37, 130
HpyCH4V	TGCA	2 cut(s)	4, 33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	225, 263
Hsp92II	CATG	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	180, 291
LpnPI	CCDG	8 cut(s)	56, 83, 109, 136, 257, 273, 275, 284
MabI	ACCWGGT	1 cut(s)	270
MaeI	CTAG	2 cut(s)	57, 186
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	2 cut(s)	182, 293
MboI	GATC	2 cut(s)	180, 291
MboII	GAAGA	1 cut(s)	226
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	3 cut(s)	78, 108, 276
MmeI	TCCRAC	2 cut(s)	136, 229
MnlI	CCTC	3 cut(s)	39, 126, 258
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	1 cut(s)	174
MspR9I	CCNGG	4 cut(s)	71, 124, 272, 288
MunI	CAATTG	1 cut(s)	108
MvaI	CCWGG	4 cut(s)	71, 124, 272, 288
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeI	CATATG	1 cut(s)	29
NdeII	GATC	2 cut(s)	180, 291
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	26
PsiI	TTATAA	1 cut(s)	41
Psp6I	CCWGG	4 cut(s)	69, 122, 270, 286
PspGI	CCWGG	4 cut(s)	69, 122, 270, 286
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	291
PsyI	GACNNNGTC	1 cut(s)	226
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	180, 291
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	4 cut(s)	71, 124, 272, 288
SetI	ASST	7 cut(s)	19, 67, 72, 106, 264, 269, 276
SexAI	ACCWGGT	1 cut(s)	270
SinI	GGWCC	1 cut(s)	53
Sse9I	AATT	3 cut(s)	78, 108, 276
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	57, 186
StyD4I	CCNGG	4 cut(s)	69, 122, 270, 286
TaaI	ACNGT	2 cut(s)	37, 130
TasI	AATT	3 cut(s)	78, 108, 276
TauI	GCSGC	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	228
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	2 cut(s)	156, 160
Tth111I	GACNNNGTC	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	2 cut(s)	57, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.