Rmu_sc0001267.1_g000040

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001267.1
OG0001573
Physical Location & Seq
Reverse (-)
177803 .. 179449
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001267.1_g000040.1.cds

Sequence Viewer

Length: 1647 bp
atgcctgttgtccccagcgggaaggacttcattgatattatcctatctcgcaaccagcggcagaccccaactgtcgtccacaagggttatgccattaatcgcctgcgtcagttctatatgcgcaaagtgaaatacacccagacaaattttcatgagaagctctcggctatcattgatgaatttcctaggctggatgacatccatcctttctatggcgatcttctacatgttctctacaacaaggaccattacaaggtcgcactggatcaaatcaatactgcaagggaccttgtttccaagattgctaaagattatgtcaagttattgaagtatggcgattcactttaccgatgcaagagtctcaaggttgctgctcttggcatgtgcacggttataaagaggattggtccgactttagcttatctagaacaaattaggcaacacatggcaaggctaccttcaattgacccaaacaccaggacaatattgatatgcggctatcccaatgtcggaaagagttcattcaccaacaagatcaccagggccgatgttgatgtccagccttatgcttttactacaaagtcattctttgtggggcatacagaatataagtacctgaggtaccaggttattgatacacctgggattttggaccgaccatttgaagactgtaacattattgagatgtgcagcatcacagcattggcacatttgagagcagctgttttgttcttcttggacatctcagggtcttgtggttataccattgcccaacaagcagccctatttcacagcatgaagtctctgttcatgaacaaaccattaattatagtctgcaacaagactgatttgcagccattggagggcatatctgaggaagacatgaagttggtcacagagatgaaagctgaagctgtgaagactgtgattggtcaaggaggcgaggctacaaatgatgatggaatactgttgaccatgagcactttgaccgaggagggggttatttccgtaaagaatgcagcttgtgagaggttattgaatcagagagttgagttgaagatgaaatctaaaaagataattgattgtttagatcgttttcatgttgagatcccaaagccaggtgaccaaaaggaaaggcctccatctatgcctcaggctgttttagaagctaaggctaagcaagcagcagagaaagaaaagagaactactgaaaaggatttggagaatgaaaatggtggtgctggtgtatactctgccagtttgaagatgaattatatccttgctcatgatgagtggaaagaggacatcatgcctgaaattcttgataagcacaatgtatttaactttgttgatcccgatattttgaataggcttgaggagttagaacgagaagaaggaatcaggcaggcagaggtggatgatgatgtggagatgggtggaatggagttgactccagaagagcagaagacattggctcagataaggaaaaagaaaagcttgctgattcaacaacatagaattaagaaaattaccgcggaaagtcgacctacagtacgtaggatatttgacaaggacgagttcacaataaagagaatgtggaggcaattgttagagttgggaattgatcctcgtagggcaactaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

548

Amino Acids

62.67

Weight (kDa)

8.18

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
Acc16I TGCGCA 1 cut(s) 122
Acc65I GGTACC 1 cut(s) 621
AccB1I GGYRCC 1 cut(s) 621
AccI GTMKAC 2 cut(s) 1248, 1543
AccII CGCG 1 cut(s) 1535
AciI CCGC 5 cut(s) 18, 58, 495, 1533, 1535
AclWI GGATC 4 cut(s) 273, 1102, 1346, 1619
AcsI RAATTY 3 cut(s) 145, 179, 1317
AcuI CTGAAG 1 cut(s) 930
AfaI GTAC 3 cut(s) 614, 623, 1554
AfiI CCNNNNNNNGG 6 cut(s) 212, 253, 509, 863, 996, 1118
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 8 cut(s) 328, 462, 665, 1039, 1057, 1264, 1366, 1508
AjnI CCWGG 5 cut(s) 476, 539, 624, 640, 1117
AluBI AGCT 8 cut(s) 160, 419, 722, 908, 914, 1022, 1169, 1497
AluI AGCT 8 cut(s) 160, 419, 722, 908, 914, 1022, 1169, 1497
Alw21I GWGCWC 2 cut(s) 389, 983
Alw26I GTCTC 2 cut(s) 365, 807
Alw44I GTGCAC 1 cut(s) 385
AlwI GGATC 4 cut(s) 273, 1102, 1346, 1619
AoxI GGCC 2 cut(s) 543, 1136
ApaLI GTGCAC 1 cut(s) 385
ApeKI GCWGC 7 cut(s) 371, 690, 719, 779, 853, 1019, 1184
ApoI RAATTY 3 cut(s) 145, 179, 1317
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
AseI ATTAAT 2 cut(s) 96, 824
Asp700I GAANNNNTTC 2 cut(s) 26, 517
Asp718I GGTACC 1 cut(s) 621
AspA2I CCTAGG 1 cut(s) 185
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 5 cut(s) 244, 286, 407, 543, 652
AsuHPI GGTGA 3 cut(s) 517, 529, 1133
AvaII GGWCC 4 cut(s) 244, 286, 407, 652
AvrII CCTAGG 1 cut(s) 185
AxyI CCTNAGG 2 cut(s) 617, 1152
BaeGI GKGCMC 1 cut(s) 389
BanI GGYRCC 1 cut(s) 621
BbsI GAAGAC 4 cut(s) 672, 885, 926, 1472
Bbv12I GWGCWC 2 cut(s) 389, 983
BbvI GCAGC 7 cut(s) 358, 702, 731, 791, 865, 1031, 1196
BccI CCATC 4 cut(s) 210, 953, 1150, 1426
BciT130I CCWGG 5 cut(s) 478, 541, 626, 642, 1119
BcoDI GTCTC 2 cut(s) 365, 807
BfaI CTAG 2 cut(s) 186, 425
BfmI CTRYAG 1 cut(s) 1548
BisI GCNGC 9 cut(s) 59, 372, 496, 691, 720, 780, 854, 1020, 1185
BlnI CCTAGG 1 cut(s) 185
BlpI GCTNAGC 1 cut(s) 1176
BlsI GCNGC 9 cut(s) 60, 373, 497, 692, 721, 781, 855, 1021, 1186
Bme1390I CCNGG 5 cut(s) 478, 541, 626, 642, 1119
Bme18I GGWCC 4 cut(s) 244, 286, 407, 652
BmgT120I GGNCC 5 cut(s) 244, 286, 407, 543, 652
BmiI GGNNCC 2 cut(s) 287, 623
BmrFI CCNGG 5 cut(s) 478, 541, 626, 642, 1119
BmsI GCATC 2 cut(s) 341, 702
BpiI GAAGAC 4 cut(s) 672, 885, 926, 1472
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BpmI CTGGAG 1 cut(s) 1437
Bpu10I CCTNAGC 1 cut(s) 1170
Bpu1102I GCTNAGC 1 cut(s) 1176
BpuEI CTTGAG 2 cut(s) 347, 1394
BsaAI YACGTR 1 cut(s) 1556
BsaJI CCNNGG 5 cut(s) 185, 540, 641, 990, 1533
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 253, 509, 863, 996, 1118
Bse1I ACTGG 2 cut(s) 267, 1257
Bse21I CCTNAGG 2 cut(s) 617, 1152
Bse3DI GCAATG 1 cut(s) 765
BseBI CCWGG 5 cut(s) 478, 541, 626, 642, 1119
BseDI CCNNGG 5 cut(s) 185, 540, 641, 990, 1533
BseGI GGATG 4 cut(s) 198, 199, 202, 1423
BseLI CCNNNNNNNGG 6 cut(s) 212, 253, 509, 863, 996, 1118
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 5 cut(s) 608, 759, 864, 1166, 1490
BseNI ACTGG 2 cut(s) 267, 1257
BseRI GAGGAG 2 cut(s) 1007, 1391
BseSI GKGCMC 1 cut(s) 389
BseXI GCAGC 7 cut(s) 358, 702, 731, 791, 865, 1031, 1196
BseYI CCCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 709
Bsh1236I CGCG 1 cut(s) 1535
BshFI GGCC 2 cut(s) 545, 1138
BshNI GGYRCC 1 cut(s) 621
BsiHKAI GWGCWC 2 cut(s) 389, 983
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 6 cut(s) 212, 253, 509, 863, 996, 1118
BsmAI GTCTC 2 cut(s) 365, 807
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 1021
BsnI GGCC 2 cut(s) 545, 1138
Bsp1286I GDGCHC 2 cut(s) 389, 983
Bsp143I GATC 7 cut(s) 217, 265, 534, 1090, 1107, 1351, 1624
Bsp1720I GCTNAGC 1 cut(s) 1176
BspACI CCGC 5 cut(s) 18, 58, 495, 1533, 1535
BspANI GGCC 2 cut(s) 545, 1138
BspCNI CTCAG 5 cut(s) 609, 758, 865, 1165, 1489
BspFNI CGCG 1 cut(s) 1535
BspHI TCATGA 3 cut(s) 151, 810, 1285
BspLI GGNNCC 2 cut(s) 287, 623
BspPI GGATC 4 cut(s) 273, 1102, 1346, 1619
BspQI GCTCTTC 1 cut(s) 1452
BspT107I GGYRCC 1 cut(s) 621
BsrDI GCAATG 1 cut(s) 765
BsrI ACTGG 2 cut(s) 267, 1257
BssECI CCNNGG 5 cut(s) 185, 540, 641, 990, 1533
BssMI GATC 7 cut(s) 217, 265, 534, 1090, 1107, 1351, 1624
BssNAI GTATAC 1 cut(s) 1249
BssT1I CCWWGG 1 cut(s) 185
Bst1107I GTATAC 1 cut(s) 1249
Bst2UI CCWGG 5 cut(s) 478, 541, 626, 642, 1119
Bst4CI ACNGT 6 cut(s) 73, 391, 671, 925, 969, 1552
Bst6I CTCTTC 1 cut(s) 1452
BstBAI YACGTR 1 cut(s) 1556
BstC8I GCNNGC 4 cut(s) 104, 1182, 1407, 1499
BstDEI CTNAG 7 cut(s) 617, 745, 873, 1152, 1170, 1176, 1476
BstDSI CCRYGG 1 cut(s) 1533
BstEII GGTNACC 1 cut(s) 1121
BstF5I GGATG 4 cut(s) 198, 199, 202, 1423
BstFNI CGCG 1 cut(s) 1535
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 7 cut(s) 220, 268, 537, 1093, 1110, 1354, 1627
BstMAI GTCTC 2 cut(s) 365, 807
BstMBI GATC 7 cut(s) 217, 265, 534, 1090, 1107, 1351, 1624
BstMWI GCNNNNNNNGC 2 cut(s) 776, 1181
BstNI CCWGG 5 cut(s) 478, 541, 626, 642, 1119
BstNSI RCATGY 2 cut(s) 230, 385
BstPI GGTNACC 1 cut(s) 1121
BstSCI CCNGG 5 cut(s) 476, 539, 624, 640, 1117
BstSFI CTRYAG 1 cut(s) 1548
BstSLI GKGCMC 1 cut(s) 389
BstSNI TACGTA 1 cut(s) 1556
BstUI CGCG 1 cut(s) 1535
BstV1I GCAGC 7 cut(s) 358, 702, 731, 791, 865, 1031, 1196
BstV2I GAAGAC 4 cut(s) 672, 885, 926, 1472
BstX2I RGATCY 1 cut(s) 1107
BstYI RGATCY 1 cut(s) 1107
BstZ17I GTATAC 1 cut(s) 1249
Bsu36I CCTNAGG 2 cut(s) 617, 1152
BsuRI GGCC 2 cut(s) 545, 1138
BtgI CCRYGG 1 cut(s) 1533
BtsCI GGATG 4 cut(s) 198, 199, 202, 1423
BtsIMutI CAGTG 1 cut(s) 260
Cac8I GCNNGC 4 cut(s) 104, 1182, 1407, 1499
CciI TCATGA 3 cut(s) 151, 810, 1285
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 5 cut(s) 244, 286, 407, 543, 652
Cfr42I CCGCGG 1 cut(s) 1536
CseI GACGC 1 cut(s) 95
CsiI ACCWGGT 1 cut(s) 624
Csp6I GTAC 3 cut(s) 613, 622, 1553
CviQI GTAC 3 cut(s) 613, 622, 1553
DdeI CTNAG 7 cut(s) 617, 745, 873, 1152, 1170, 1176, 1476
DpnI GATC 7 cut(s) 219, 267, 536, 1092, 1109, 1353, 1626
DpnII GATC 7 cut(s) 217, 265, 534, 1090, 1107, 1351, 1624
Eam1104I CTCTTC 1 cut(s) 1452
EarI CTCTTC 1 cut(s) 1452
Eco105I TACGTA 1 cut(s) 1556
Eco130I CCWWGG 1 cut(s) 185
Eco147I AGGCCT 1 cut(s) 1138
Eco47I GGWCC 4 cut(s) 244, 286, 407, 652
Eco57I CTGAAG 1 cut(s) 930
Eco81I CCTNAGG 2 cut(s) 617, 1152
Eco91I GGTNACC 1 cut(s) 1121
EcoO109I RGGNCCY 1 cut(s) 286
EcoO65I GGTNACC 1 cut(s) 1121
EcoRII CCWGG 5 cut(s) 476, 539, 624, 640, 1117
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FalI AAGNNNNNCTT 6 cut(s) 442, 474, 572, 604, 1481, 1513
FaqI GGGAC 1 cut(s) 299
FauI CCCGC 1 cut(s) 11
FblI GTMKAC 2 cut(s) 1248, 1543
Fnu4HI GCNGC 9 cut(s) 59, 372, 496, 691, 720, 780, 854, 1020, 1185
FokI GGATG 4 cut(s) 185, 189, 206, 1430
Fsp4HI GCNGC 9 cut(s) 59, 372, 496, 691, 720, 780, 854, 1020, 1185
FspBI CTAG 2 cut(s) 186, 425
FspI TGCGCA 1 cut(s) 122
GlaI GCGC 1 cut(s) 122
GluI GCNGC 9 cut(s) 59, 372, 496, 691, 720, 780, 854, 1020, 1185
GsaI CCCAGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 1437
HaeIII GGCC 2 cut(s) 545, 1138
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 123
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 3 cut(s) 972, 1449, 1544
HindII GTYRAC 3 cut(s) 972, 1449, 1544
HindIII AAGCTT 1 cut(s) 1495
HinfI GANTC 6 cut(s) 338, 358, 1039, 1398, 1450, 1504
HphI GGTGA 3 cut(s) 517, 529, 1133
Hpy166II GTNNAC 7 cut(s) 79, 387, 972, 1249, 1449, 1544, 1581
Hpy188I TCNGA 5 cut(s) 411, 512, 874, 1044, 1479
Hpy188III TCNNGA 7 cut(s) 152, 425, 811, 1286, 1322, 1355, 1454
Hpy8I GTNNAC 7 cut(s) 79, 387, 972, 1249, 1449, 1544, 1581
HpyAV CCTTC 3 cut(s) 16, 468, 1388
HpyCH4III ACNGT 6 cut(s) 73, 391, 671, 925, 969, 1552
HpyCH4IV ACGT 1 cut(s) 1555
HpyCH4V TGCA 7 cut(s) 281, 354, 387, 690, 837, 853, 1019
HpyF10VI GCNNNNNNNGC 2 cut(s) 776, 1181
HpyF3I CTNAG 7 cut(s) 617, 745, 873, 1152, 1170, 1176, 1476
HpySE526I ACGT 1 cut(s) 1555
HspAI GCGC 1 cut(s) 121
KpnI GGTACC 1 cut(s) 625
KspI CCGCGG 1 cut(s) 1536
Kzo9I GATC 7 cut(s) 217, 265, 534, 1090, 1107, 1351, 1624
LguI GCTCTTC 1 cut(s) 1452
Lsp1109I GCAGC 7 cut(s) 358, 702, 731, 791, 865, 1031, 1196
LweI GCATC 2 cut(s) 341, 702
MabI ACCWGGT 1 cut(s) 624
MaeI CTAG 2 cut(s) 186, 425
MaeII ACGT 1 cut(s) 1555
MaeIII GTNAC 3 cut(s) 671, 892, 1121
MalI GATC 7 cut(s) 219, 267, 536, 1092, 1109, 1353, 1626
MboI GATC 7 cut(s) 217, 265, 534, 1090, 1107, 1351, 1624
MfeI CAATTG 2 cut(s) 462, 1604
MflI RGATCY 1 cut(s) 1107
MhlI GDGCHC 2 cut(s) 389, 983
MlyI GAGTC 2 cut(s) 367, 1444
MmeI TCCRAC 2 cut(s) 434, 490
MroXI GAANNNNTTC 2 cut(s) 26, 517
MseI TTAA 4 cut(s) 96, 824, 1341, 1521
MslI CAYNNNNRTG 1 cut(s) 899
MspA1I CMGCKG 4 cut(s) 18, 58, 722, 1535
MspR9I CCNGG 5 cut(s) 478, 541, 626, 642, 1119
MunI CAATTG 2 cut(s) 462, 1604
Mva1269I GAATGC 1 cut(s) 1021
MvaI CCWGG 5 cut(s) 478, 541, 626, 642, 1119
MvnI CGCG 1 cut(s) 1535
MwoI GCNNNNNNNGC 2 cut(s) 776, 1181
NdeII GATC 7 cut(s) 217, 265, 534, 1090, 1107, 1351, 1624
NlaIV GGNNCC 2 cut(s) 287, 623
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 2 cut(s) 892, 1121
NsbI TGCGCA 1 cut(s) 122
NspI RCATGY 2 cut(s) 230, 385
PagI TCATGA 3 cut(s) 151, 810, 1285
PceI AGGCCT 1 cut(s) 1138
PciI ACATGT 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 1452
PctI GAATGC 1 cut(s) 1021
PdmI GAANNNNTTC 2 cut(s) 26, 517
PfeI GAWTC 4 cut(s) 338, 1039, 1398, 1504
PkrI GCNGC 9 cut(s) 60, 373, 497, 692, 721, 781, 855, 1021, 1186
PleI GAGTC 2 cut(s) 366, 1444
PpsI GAGTC 2 cut(s) 366, 1444
Ppu21I YACGTR 1 cut(s) 1556
PpuMI RGGWCCY 1 cut(s) 286
PscI ACATGT 1 cut(s) 226
PshBI ATTAAT 2 cut(s) 96, 824
PsiI TTATAA 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 5 cut(s) 476, 539, 624, 640, 1117
PspEI GGTNACC 1 cut(s) 1121
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 5 cut(s) 476, 539, 624, 640, 1117
PspN4I GGNNCC 2 cut(s) 287, 623
PspPI GGNCC 5 cut(s) 244, 286, 407, 543, 652
PspPPI RGGWCCY 1 cut(s) 286
PsuI RGATCY 1 cut(s) 1107
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 3 cut(s) 614, 623, 1554
RsaNI GTAC 3 cut(s) 613, 622, 1553
RseI CAYNNNNRTG 1 cut(s) 899
SacII CCGCGG 1 cut(s) 1536
SalI GTCGAC 1 cut(s) 1542
SapI GCTCTTC 1 cut(s) 1452
SaqAI TTAA 4 cut(s) 96, 824, 1341, 1521
SatI GCNGC 9 cut(s) 59, 372, 496, 691, 720, 780, 854, 1020, 1185
Sau3AI GATC 7 cut(s) 217, 265, 534, 1090, 1107, 1351, 1624
Sau96I GGNCC 5 cut(s) 244, 286, 407, 543, 652
SchI GAGTC 2 cut(s) 367, 1444
ScrFI CCNGG 5 cut(s) 478, 541, 626, 642, 1119
SduI GDGCHC 2 cut(s) 389, 983
SexAI ACCWGGT 1 cut(s) 624
SfaNI GCATC 2 cut(s) 341, 702
SfcI CTRYAG 1 cut(s) 1548
Sfr303I CCGCGG 1 cut(s) 1536
SgrBI CCGCGG 1 cut(s) 1536
SinI GGWCC 4 cut(s) 244, 286, 407, 652
SmiMI CAYNNNNRTG 1 cut(s) 899
SmlI CTYRAG 2 cut(s) 362, 1373
SmoI CTYRAG 2 cut(s) 362, 1373
SnaBI TACGTA 1 cut(s) 1556
SseBI AGGCCT 1 cut(s) 1138
SsiI CCGC 5 cut(s) 18, 58, 495, 1533, 1535
SspI AATATT 1 cut(s) 486
SspMI CTAG 2 cut(s) 186, 425
StuI AGGCCT 1 cut(s) 1138
StyD4I CCNGG 5 cut(s) 476, 539, 624, 640, 1117
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 6 cut(s) 73, 391, 671, 925, 969, 1552
TaiI ACGT 1 cut(s) 1558
TaqI TCGA 1 cut(s) 1543
TaqII GACCGA 2 cut(s) 669, 1004
TauI GCSGC 2 cut(s) 61, 498
TfiI GAWTC 4 cut(s) 338, 1039, 1398, 1504
Tru1I TTAA 4 cut(s) 96, 824, 1341, 1521
Tru9I TTAA 4 cut(s) 96, 824, 1341, 1521
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 2 cut(s) 892, 1121
TseI GCWGC 7 cut(s) 371, 690, 719, 779, 853, 1019, 1184
Tsp45I GTSAC 2 cut(s) 892, 1121
TspGWI ACGGA 1 cut(s) 997
TspRI CASTG 1 cut(s) 267
VneI GTGCAC 1 cut(s) 385
VpaK11BI GGWCC 4 cut(s) 244, 286, 407, 652
VspI ATTAAT 2 cut(s) 96, 824
XapI RAATTY 3 cut(s) 145, 179, 1317
XbaI TCTAGA 1 cut(s) 424
XceI RCATGY 2 cut(s) 230, 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 185
XmiI GTMKAC 2 cut(s) 1248, 1543
XmnI GAANNNNTTC 2 cut(s) 26, 517
XspI CTAG 2 cut(s) 186, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.