Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001573

Physical Location & Seq

Genomic Coordinates Reverse (-)

14346688 .. 14348356

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13360.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCAATATAACTTCAAGAAGATGACTGTTGTGCCAAATGGGAAGGACTTCATTGACATTATCTTATCTCGCACCCAGCGGCAGACCCCAACCGTTGTCCACAAGGGTTATATGCCATTTGCCGCCTTCGTCAGTTCTATATGTGTTGTTGCTCTTGGTCGCATGTGCATGGTTATAAAGAGGATTGATCCTAGTTTAGCTTACCTAGAACAAATTAGGCAGCACGTGGCTAGGCTACCTTCAATTGACCCTAATACCATGACAGTATTGATTTGTGGCTATCCGAATGTTGGAAAGAGTTCATTCATTAACAAGATTACTAGGGCTGATGAGGATGTCCAGCCCTATGCTTTCACTACCAAATATGCTGCGGCGTTGTTCTTCTTGGACATCTCAGGGTCTTGTGGGTACAACAATGCCCAACAGACAACTCTTTTTCACAGCATTAAGTCTCTGTTTATGAACAAACCACTGATTATAGTCTGCAATAAGACTGATTTGCAGCCATTTGACGGTATATCTGAGGAAGACAAAAAGTTGGTCGCAGAGATGAAAAATGAAGCAATGAAGACAGTGGTTGGTCAAGGAGGTGAGGCTACGAATGATAAGGGGGTACTCTTGACCATGAGCACTTTGATCGATGAGGGGGTGATGTCTGTAAAGAATGCAGCTTGTGAGAGGTTGTTGAATCAGAGAGTTGAGCTGAAGATGAAATCCAAAAGAATAAATGACTGCTTAAATTTCATGTTGCAATGCGAAATTTTAGAAGCTAAGTCTAAGCAAGCGGTGGAGAAGGAAAAGAGGAGTACAGAAAGAGATTTGGAGAATGAGAATGACGGTGTTGGTGTGTACTCTGCCAGTTTGAAGAAGCACTATATCTTAGTTAATGATGAATGGAAAGAGGATGTCATGCCAGAAAATCTTGACGGGCACAATGTGTTTGACTTTGTTGATCCTGATATTTTGCATAGGCTTGAGGAGTTGGAACGAGAAGAAAGACTCCGACAGGAAGAGGAGGAGCAGAAGACGTTGGCTGAGATAAGGAAAAAGAAAAGCATTCTCATTCAACAACATGGAATGAAGAAAAGTACGGCAGAGAGTCGACCAACTGTACCAAGGAAATTCGACGAGGATAGGGAGTTCGCAACAAAGAGAATGGGGAGGCAGCTTACAAAGTTGGGGATTTATCCTACTATGTCAATTTATCGAGCGCCGGAAGCAGATCTGTCTCCAGGGGTCGGAAAAGGGAGAGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1 NOGCT

Protein Analysis

420

Amino Acids

47.65

Weight (kDa)

7.99

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10300 AT1G10300 AT1G10300 AT1G50920
fragaria_vesca	FvH4_3g28930 FvH4_3g28930 FvH4_6g37740
malus_domestica	MD06G1031200.v1.1 MD11G1222700.v1.1 MD16G1277600.v1.1
prunus_persica	Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.4G247400_v2.0.a1 Prupe.5G045700_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.6G149400_v2.0.a1
pyrus_communis	pycom03g13360 pycom06g02600 pycom11g16960 pycom11g19650
rosa_chinensis	RchiOBHm_Chr3g0491451 RchiOBHm_Chr5g0051831 RchiOBHm_Chr5g0051911
rosa_laevigata	RLG00000034859 RLG00000034861
rosa_multiflora	Rmu_co8440613.1_g000002 Rmu_sc0001267.1_g000040
rosa_roxburghii	Rroxscaffold_1G00027370 Rroxscaffold_1G00027400
rosa_rugosa	Rorug03G0248800 Rorug03G0248800 Rorug03G0249700 Rorug05G0276600 Rorug05G0276700 Rorug05G0276800
rosa_samantha	Rh3AG298700 Rh3DG332500 Rh3DG333200 Rh5AG348600 Rh5AG348900 Rh5BG359100 Rh5BG359200 Rh5BG359900 Rh5CG384700 Rh5CG384900 Rh5DG374600
rosa_wichuraiana	Rw3G026370 Rw5G032900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	1102
AciI	CCGC	4 cut(s)	79, 123, 371, 785
AclWI	GGATC	2 cut(s)	182, 947
AcsI	RAATTY	3 cut(s)	739, 759, 1121
AcuI	CTGAAG	1 cut(s)	725
AcvI	CACGTG	1 cut(s)	226
AdeI	CACNNNGTG	1 cut(s)	937
AfaI	GTAC	6 cut(s)	410, 615, 808, 851, 1090, 1113
AfiI	CCNNNNNNNGG	3 cut(s)	290, 512, 1238
AgsI	TTSAA	5 cut(s)	16, 243, 688, 865, 1067
AjnI	CCWGG	1 cut(s)	1231
AloI	GAACNNNNNNTCC	2 cut(s)	1124, 1156
AluBI	AGCT	5 cut(s)	200, 671, 703, 770, 1168
AluI	AGCT	5 cut(s)	200, 671, 703, 770, 1168
Alw21I	GWGCWC	1 cut(s)	632
Alw26I	GTCTC	2 cut(s)	456, 1233
AlwI	GGATC	2 cut(s)	182, 947
ApeKI	GCWGC	5 cut(s)	220, 368, 502, 668, 1165
ApoI	RAATTY	3 cut(s)	739, 759, 1121
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
Asp700I	GAANNNNTTC	2 cut(s)	47, 298
AspLEI	GCGC	1 cut(s)	1213
AsuHPI	GGTGA	2 cut(s)	602, 661
BaeGI	GKGCMC	1 cut(s)	933
BbrPI	CACGTG	1 cut(s)	226
BbsI	GAAGAC	3 cut(s)	534, 575, 1031
Bbv12I	GWGCWC	1 cut(s)	632
BbvI	GCAGC	5 cut(s)	232, 355, 514, 680, 1177
BceAI	ACGGC	1 cut(s)	1107
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciT130I	CCWGG	1 cut(s)	1233
BcoDI	GTCTC	2 cut(s)	456, 1233
BfaI	CTAG	4 cut(s)	192, 206, 231, 321
BfoI	RGCGCY	1 cut(s)	1214
BglII	AGATCT	1 cut(s)	1222
BisI	GCNGC	8 cut(s)	80, 123, 221, 369, 372, 503, 669, 1166
BlsI	GCNGC	8 cut(s)	81, 124, 222, 370, 373, 504, 670, 1167
Bme1390I	CCNGG	1 cut(s)	1233
BmrFI	CCNGG	1 cut(s)	1233
BpiI	GAAGAC	3 cut(s)	534, 575, 1031
BpmI	CTGGAG	1 cut(s)	1215
BpuEI	CTTGAG	1 cut(s)	995
Bsa29I	ATCGAT	1 cut(s)	639
BsaAI	YACGTR	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	1115, 1232
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 512, 1238
Bse1I	ACTGG	1 cut(s)	858
Bse3DI	GCAATG	2 cut(s)	570, 758
BseBI	CCWGG	1 cut(s)	1233
BseCI	ATCGAT	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	1115, 1232
BseGI	GGATG	2 cut(s)	340, 910
BseLI	CCNNNNNNNGG	3 cut(s)	290, 512, 1238
BseMI	GCAATG	2 cut(s)	570, 758
BseMII	CTCAG	3 cut(s)	408, 513, 1026
BseNI	ACTGG	1 cut(s)	858
BseRI	GAGGAG	4 cut(s)	817, 992, 1028, 1031
BseSI	GKGCMC	1 cut(s)	933
BseXI	GCAGC	5 cut(s)	232, 355, 514, 680, 1177
BseYI	CCCAGC	1 cut(s)	75
BshVI	ATCGAT	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	1214
BslI	CCNNNNNNNGG	3 cut(s)	290, 512, 1238
BsmAI	GTCTC	2 cut(s)	456, 1233
BsmI	GAATGC	2 cut(s)	670, 1056
Bsp1286I	GDGCHC	2 cut(s)	632, 933
Bsp143I	GATC	5 cut(s)	187, 636, 952, 1222, 1252
BspACI	CCGC	4 cut(s)	79, 123, 371, 785
BspCNI	CTCAG	3 cut(s)	407, 514, 1027
BspDI	ATCGAT	1 cut(s)	639
BspPI	GGATC	2 cut(s)	182, 947
BsrDI	GCAATG	2 cut(s)	570, 758
BsrI	ACTGG	1 cut(s)	858
BssECI	CCNNGG	2 cut(s)	1115, 1232
BssMI	GATC	5 cut(s)	187, 636, 952, 1222, 1252
BssT1I	CCWWGG	1 cut(s)	1115
Bst2UI	CCWGG	1 cut(s)	1233
Bst4CI	ACNGT	7 cut(s)	28, 94, 265, 515, 574, 839, 1111
Bst6I	CTCTTC	1 cut(s)	1005
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	783
BstDEI	CTNAG	6 cut(s)	394, 522, 771, 777, 880, 1035
BstF5I	GGATG	2 cut(s)	340, 910
BstH2I	RGCGCY	1 cut(s)	1214
BstHHI	GCGC	1 cut(s)	1213
BstKTI	GATC	5 cut(s)	190, 639, 955, 1225, 1255
BstMAI	GTCTC	2 cut(s)	456, 1233
BstMBI	GATC	5 cut(s)	187, 636, 952, 1222, 1252
BstMWI	GCNNNNNNNGC	1 cut(s)	1217
BstNI	CCWGG	1 cut(s)	1233
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	1231
BstSLI	GKGCMC	1 cut(s)	933
BstV1I	GCAGC	5 cut(s)	232, 355, 514, 680, 1177
BstV2I	GAAGAC	3 cut(s)	534, 575, 1031
BstX2I	RGATCY	1 cut(s)	1222
BstYI	RGATCY	1 cut(s)	1222
Bsu15I	ATCGAT	1 cut(s)	639
BsuTUI	ATCGAT	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	340, 910
BtsIMutI	CAGTG	2 cut(s)	470, 579
Cac8I	GCNNGC	1 cut(s)	783
CfoI	GCGC	1 cut(s)	1213
ClaI	ATCGAT	1 cut(s)	639
Csp6I	GTAC	6 cut(s)	409, 614, 807, 850, 1089, 1112
CviAII	CATG	7 cut(s)	163, 169, 259, 625, 745, 910, 1073
CviQI	GTAC	6 cut(s)	409, 614, 807, 850, 1089, 1112
DdeI	CTNAG	6 cut(s)	394, 522, 771, 777, 880, 1035
DpnI	GATC	5 cut(s)	189, 638, 954, 1224, 1254
DpnII	GATC	5 cut(s)	187, 636, 952, 1222, 1252
DraIII	CACNNNGTG	1 cut(s)	937
Eam1104I	CTCTTC	1 cut(s)	1005
EarI	CTCTTC	1 cut(s)	1005
Eco130I	CCWWGG	1 cut(s)	1115
Eco57I	CTGAAG	1 cut(s)	725
Eco72I	CACGTG	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	1231
EcoT14I	CCWWGG	1 cut(s)	1115
ErhI	CCWWGG	1 cut(s)	1115
FaeI	CATG	7 cut(s)	166, 172, 262, 628, 748, 913, 1076
FatI	CATG	7 cut(s)	162, 168, 258, 624, 744, 909, 1072
FblI	GTMKAC	1 cut(s)	1102
Fnu4HI	GCNGC	8 cut(s)	80, 123, 221, 369, 372, 503, 669, 1166
FokI	GGATG	2 cut(s)	347, 917
Fsp4HI	GCNGC	8 cut(s)	80, 123, 221, 369, 372, 503, 669, 1166
FspBI	CTAG	4 cut(s)	192, 206, 231, 321
GlaI	GCGC	1 cut(s)	1212
GluI	GCNGC	8 cut(s)	80, 123, 221, 369, 372, 503, 669, 1166
GsaI	CCCAGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	1215
HaeII	RGCGCY	1 cut(s)	1214
HapII	CCGG	1 cut(s)	1214
HhaI	GCGC	1 cut(s)	1213
Hin1II	CATG	7 cut(s)	166, 172, 262, 628, 748, 913, 1076
Hin6I	GCGC	1 cut(s)	1211
HinP1I	GCGC	1 cut(s)	1211
HincII	GTYRAC	1 cut(s)	1103
HindII	GTYRAC	1 cut(s)	1103
HinfI	GANTC	3 cut(s)	688, 999, 1099
HpaII	CCGG	1 cut(s)	1214
HphI	GGTGA	2 cut(s)	602, 661
Hpy166II	GTNNAC	3 cut(s)	100, 850, 1103
Hpy188I	TCNGA	5 cut(s)	285, 523, 693, 1004, 1241
Hpy188III	TCNNGA	4 cut(s)	16, 619, 923, 956
Hpy8I	GTNNAC	3 cut(s)	100, 850, 1103
Hpy99I	CGWCG	1 cut(s)	1130
HpyAV	CCTTC	4 cut(s)	37, 136, 249, 787
HpyCH4III	ACNGT	7 cut(s)	28, 94, 265, 515, 574, 839, 1111
HpyCH4IV	ACGT	2 cut(s)	225, 1028
HpyCH4V	TGCA	7 cut(s)	4, 168, 486, 502, 668, 751, 967
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1217
HpyF3I	CTNAG	6 cut(s)	394, 522, 771, 777, 880, 1035
HpySE526I	ACGT	2 cut(s)	225, 1028
Hsp92II	CATG	7 cut(s)	166, 172, 262, 628, 748, 913, 1076
HspAI	GCGC	1 cut(s)	1211
Kzo9I	GATC	5 cut(s)	187, 636, 952, 1222, 1252
LmnI	GCTCC	1 cut(s)	1018
Lsp1109I	GCAGC	5 cut(s)	232, 355, 514, 680, 1177
MaeI	CTAG	4 cut(s)	192, 206, 231, 321
MaeII	ACGT	2 cut(s)	225, 1028
MalI	GATC	5 cut(s)	189, 638, 954, 1224, 1254
MboI	GATC	5 cut(s)	187, 636, 952, 1222, 1252
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	1222
MhlI	GDGCHC	2 cut(s)	632, 933
MluCI	AATT	6 cut(s)	213, 243, 739, 759, 1121, 1200
MlyI	GAGTC	2 cut(s)	993, 1108
MmeI	TCCRAC	4 cut(s)	271, 963, 1027, 1219
MroXI	GAANNNNTTC	2 cut(s)	47, 298
MseI	TTAA	4 cut(s)	309, 447, 737, 885
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	1 cut(s)	1214
MspR9I	CCNGG	1 cut(s)	1233
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	2 cut(s)	670, 1056
MvaI	CCWGG	1 cut(s)	1233
MwoI	GCNNNNNNNGC	1 cut(s)	1217
NdeII	GATC	5 cut(s)	187, 636, 952, 1222, 1252
NlaIII	CATG	7 cut(s)	166, 172, 262, 628, 748, 913, 1076
NspI	RCATGY	1 cut(s)	166
PctI	GAATGC	2 cut(s)	670, 1056
PdmI	GAANNNNTTC	2 cut(s)	47, 298
PfeI	GAWTC	1 cut(s)	688
PkrI	GCNGC	8 cut(s)	81, 124, 222, 370, 373, 504, 670, 1167
PleI	GAGTC	2 cut(s)	993, 1107
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
PpsI	GAGTC	2 cut(s)	993, 1107
Ppu21I	YACGTR	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	1231
PspCI	CACGTG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	1231
PsuI	RGATCY	1 cut(s)	1222
RsaI	GTAC	6 cut(s)	410, 615, 808, 851, 1090, 1113
RsaNI	GTAC	6 cut(s)	409, 614, 807, 850, 1089, 1112
RseI	CAYNNNNRTG	1 cut(s)	167
SalI	GTCGAC	1 cut(s)	1101
SaqAI	TTAA	4 cut(s)	309, 447, 737, 885
SatI	GCNGC	8 cut(s)	80, 123, 221, 369, 372, 503, 669, 1166
Sau3AI	GATC	5 cut(s)	187, 636, 952, 1222, 1252
SchI	GAGTC	2 cut(s)	993, 1108
ScrFI	CCNGG	1 cut(s)	1233
SduI	GDGCHC	2 cut(s)	632, 933
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	974
SmoI	CTYRAG	1 cut(s)	974
Sse9I	AATT	6 cut(s)	213, 243, 739, 759, 1121, 1200
SsiI	CCGC	4 cut(s)	79, 123, 371, 785
SspMI	CTAG	4 cut(s)	192, 206, 231, 321
StyD4I	CCNGG	1 cut(s)	1231
StyI	CCWWGG	1 cut(s)	1115
TaaI	ACNGT	7 cut(s)	28, 94, 265, 515, 574, 839, 1111
TaiI	ACGT	2 cut(s)	228, 1031
TaqI	TCGA	4 cut(s)	639, 1102, 1125, 1207
TasI	AATT	6 cut(s)	213, 243, 739, 759, 1121, 1200
TatI	WGTACW	2 cut(s)	806, 849
TauI	GCSGC	3 cut(s)	82, 125, 374
TfiI	GAWTC	1 cut(s)	688
Tru1I	TTAA	4 cut(s)	309, 447, 737, 885
Tru9I	TTAA	4 cut(s)	309, 447, 737, 885
TscAI	CASTG	2 cut(s)	477, 579
TseI	GCWGC	5 cut(s)	220, 368, 502, 668, 1165
TspRI	CASTG	2 cut(s)	477, 579
XapI	RAATTY	3 cut(s)	739, 759, 1121
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	1102
XmnI	GAANNNNTTC	2 cut(s)	47, 298
XspI	CTAG	4 cut(s)	192, 206, 231, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.