FvH4_3g28930

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001573
Physical Location & Seq
Reverse (-)
22017640 .. 22021308
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28930.t1

Sequence Viewer

Length: 2019 bp
ATGGTGCAATATAATTTCAAGAGGATGACTGTTGTCCCCAGTGGGAAGGACTTCATTGATATTATCCTGTCTCGTACCCAGAGGCAGACCCCAACTGTTGTCCACAAGGGTTATGCCATTAATCGCCTGCGTCAGTTCTATATGCGCAAGGTGAAATATACCCAGACTAATTTTCATGAGAAGCTCTCTACTATCATCGATGAATTTCCTAGGCTGGATGACATCCACCCTTTCTATGGCGATCTTCTACATGTTCTCTACAACAAGGACCATTACAAGCTCGCGCTTGGGCAGATCAATACTGCAAGGAACCTTATTTCCAAGATTGCTAAGGATTATGTCAAGTTGCTGAAGTATGGTGATTCACTTTACCGATGCAAGAGTCTCAAGGTTGCTGCTCTTGGCCGTATGTGCACGGTTATAAAGAGGATTGGTCCCAGTTTAGCTTATCTGGAACAAATCAGGCAACACATGGCAAGGCTTCCTTCAATTGATCCAAACACCCGGACAATATTGATTTGCGGCTATCCAAATGTGGGAAAGAGTTCATTCATCAACAAGATCACTAGGGCCGATGTTGATGTCCAGCCTTATGCTTTTACTACCAAGTCACTCTTTGTGGGGCATACAGATTACAAGTACTTGAGGTACCAGGTTATTGATACACCTGGGATTTTGGACCGACCATTTGAAGACCGCAACATTATTGAGATGTGCAGCATCACAGCATTGGCACATTTGAGAGCTGCTGTTTTGTTCTTCTTGGACATCTCAGGTTCTTGCGGTTATACCATTGCCCAACAAGCAGCCCTTTTTCAAAGCATTAAGTCTCTATTCATGAACAAACCATTGATTATAGTCTGCAACAAGACTGATTTGCAGCCATTGGAGGGCATATCTGAGGAAGACATGAAGTTGGTCACAGAGATGAAATCTGAAGCTATGAAGACTGTGATTGGTCAAGGAGGCGAGGCTACAAATGATGACGGGGTACTCTTGACCATGAGTACTTTGACTGAGGAGGGGGTTACTTCTGTAAAAAATGCAGCTTGTGAGAGGTTATTGAATCAGAGAGTTGAGCTGAAGATGAAAACTAAAAAGATAAATGATTGTTTAAATCGTTTTCATGTTGCGATGCCAAAACCACGTGACCATAAGGAAAGGCCTGTATGTATACCTCAGGCTGTTTTAGAAGCCAGGGCTAAGCAAGCAGCAGAGAAGGAAAAGAGAACTACTGAAAAGGATTTGGAGAATCAAAATGGTGGTGCAGGTGTTTACTCTGCCAGTTTGAAGAAGAATTATATTCTAGCTCATGACGAGTGGAAAGAGGATATCATGCCTGAAATTCTTGATGGGCACAATGTCTTTGACTTTGTTGATCCTGATATTTTAATCAGGCTTGAGGAGTTAGAACAAGAAGAAGGACTGTGGCAGGCAGAGGTGGATGATGATGTTGAGATGGGTGGAATGGAGTTGACTCCAGAAGAGCAGAAGGCATTGGCTGAGATAAGGAAAAAGAAAAGCCTGCTGATTCAACAACATAGGATCAAGAAAAGTACAGCAGAGAGTCGACCTACAGTACCTAGGAAATTTGACAAGGACAGGGAGTTCACATCAAAGAGAATGGGGAGGCAGCTGTCAGCGCTGGGAATTGATCCTAGTATGGCAATTAACCGCGCCCGCAGCAGATCTGTTTCTATGAGGGGCCGAAAGAGAGAGAGATCAGTTAAGGATGGTAATGGTAGTGGTTCTGACATGGAGGATACACCCAACAAGAAGTTGCGCTCGATGTCTAGACCTCATTCAAGGTCTAGATCAAGACCGCCTACTGATGTTGTCCCTGGTGATGGCTTTAAGGACTCTGATCAAAAGTCTAAAGCACTAGACAAGGCCCGGAAATCTGTGAAGAACAGAAACAAGAACGCTAGACGTGGAGAGGCAGATAGAGTTATTCCCAATATGAAACCAAAGCATTTGTTCTCTGGAAAACGCTCAAATGGAAAGACCCAAAGGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

673

Amino Acids

76.57

Weight (kDa)

9.61

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOG1_N PF17835 6 - 165 6.9e-61 NOG1 N-terminal helical domain
FeoB_N PF02421 170 - 319 1.9e-09 Ferrous iron transport protein B
MMR_HSR1 PF01926 171 - 290 2.4e-18 50S ribosome-binding GTPase
NOG1 PF06858 236 - 292 6.9e-25 Nucleolar GTP-binding protein 1 (NOG1)
NOGCT PF08155 410 - 463 3.3e-26 NOGCT (NUC087) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AarI CACCTGC 1 cut(s) 1259
Acc16I TGCGCA 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 1259
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 648
AccI GTMKAC 2 cut(s) 1174, 1570
AccII CGCG 2 cut(s) 284, 1677
AciI CCGC 6 cut(s) 522, 697, 783, 1675, 1681, 1823
AclWI GGATC 4 cut(s) 488, 1373, 1553, 1649
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 3 cut(s) 203, 1344, 1589
AcuI CTGAAG 3 cut(s) 371, 957, 1103
AcvI CACGTG 1 cut(s) 1148
AfaI GTAC 7 cut(s) 76, 641, 650, 993, 1009, 1558, 1581
AfeI AGCGCT 1 cut(s) 1644
AfiI CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1847
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 8 cut(s) 19, 489, 692, 818, 1066, 1291, 1535, 1806
AjiI CACGTC 1 cut(s) 1931
AjnI CCWGG 4 cut(s) 651, 667, 1196, 1840
AloI GAACNNNNNNTCC 4 cut(s) 302, 334, 1592, 1624
AluBI AGCT 9 cut(s) 184, 280, 446, 746, 941, 1049, 1081, 1310, 1636
AluI AGCT 9 cut(s) 184, 280, 446, 746, 941, 1049, 1081, 1310, 1636
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 3 cut(s) 75, 389, 834
Alw44I GTGCAC 1 cut(s) 412
AlwI GGATC 4 cut(s) 488, 1373, 1553, 1649
Aor51HI AGCGCT 1 cut(s) 1644
AoxI GGCC 5 cut(s) 403, 570, 1163, 1705, 1890
ApaLI GTGCAC 1 cut(s) 412
ApeKI GCWGC 9 cut(s) 395, 717, 746, 806, 880, 1046, 1211, 1633, 1683
ApoI RAATTY 3 cut(s) 203, 1344, 1589
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AseI ATTAAT 1 cut(s) 120
Asp700I GAANNNNTTC 2 cut(s) 50, 544
Asp718I GGTACC 1 cut(s) 648
AspA2I CCTAGG 2 cut(s) 209, 1583
AspLEI GCGC 6 cut(s) 147, 286, 1645, 1679, 1785, 2016
AspS9I GGNCC 6 cut(s) 268, 434, 570, 679, 1705, 1891
AsuC2I CCSGG 2 cut(s) 505, 1894
AsuHPI GGTGA 3 cut(s) 163, 371, 1856
AvaII GGWCC 3 cut(s) 268, 434, 679
AvrII CCTAGG 2 cut(s) 209, 1583
AxyI CCTNAGG 1 cut(s) 1179
BaeGI GKGCMC 2 cut(s) 416, 1359
BanI GGYRCC 1 cut(s) 648
BbrPI CACGTG 1 cut(s) 1148
BbsI GAAGAC 3 cut(s) 699, 912, 953
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 9 cut(s) 382, 729, 733, 818, 892, 1058, 1223, 1645, 1695
BccI CCATC 4 cut(s) 1346, 1453, 1727, 1841
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 4 cut(s) 653, 669, 1198, 1842
BciVI GTATCC 1 cut(s) 1756
BclI TGATCA 1 cut(s) 1864
BcnI CCSGG 2 cut(s) 505, 1894
BcoDI GTCTC 3 cut(s) 75, 389, 834
BfaI CTAG 9 cut(s) 210, 567, 1307, 1584, 1659, 1794, 1812, 1883, 1926
BfmI CTRYAG 1 cut(s) 1575
BfoI RGCGCY 2 cut(s) 1646, 2017
BfuAI ACCTGC 1 cut(s) 1259
BfuI GTATCC 1 cut(s) 1756
BglII AGATCT 1 cut(s) 1688
BlnI CCTAGG 2 cut(s) 209, 1583
BlpI GCTNAGC 1 cut(s) 1203
BmcAI AGTACT 2 cut(s) 641, 1009
Bme1390I CCNGG 6 cut(s) 505, 653, 669, 1198, 1842, 1894
Bme18I GGWCC 3 cut(s) 268, 434, 679
BmgBI CACGTC 1 cut(s) 1931
BmgT120I GGNCC 6 cut(s) 268, 434, 570, 679, 1705, 1891
BmiI GGNNCC 4 cut(s) 311, 436, 650, 1706
BmrFI CCNGG 6 cut(s) 505, 653, 669, 1198, 1842, 1894
BmrI ACTGGG 2 cut(s) 33, 432
BmsI GCATC 3 cut(s) 365, 729, 1125
BmuI ACTGGG 2 cut(s) 33, 432
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 3 cut(s) 699, 912, 953
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 1 cut(s) 1464
Bpu10I CCTNAGC 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 1203
BpuEI CTTGAG 3 cut(s) 371, 664, 1421
BpuMI CCSGG 2 cut(s) 505, 1894
Bsa29I ATCGAT 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 1148
BsaJI CCNNGG 5 cut(s) 209, 668, 1197, 1583, 1840
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1847
Bse1I ACTGG 3 cut(s) 39, 438, 1284
Bse21I CCTNAGG 1 cut(s) 1179
Bse3DI GCAATG 1 cut(s) 792
BseBI CCWGG 4 cut(s) 653, 669, 1198, 1842
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 5 cut(s) 209, 668, 1197, 1583, 1840
BseGI GGATG 5 cut(s) 30, 222, 223, 1450, 1738
BseLI CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1847
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 5 cut(s) 786, 891, 1008, 1193, 1494
BseNI ACTGG 3 cut(s) 39, 438, 1284
BseRI GAGGAG 2 cut(s) 1034, 1418
BseSI GKGCMC 2 cut(s) 416, 1359
BseXI GCAGC 9 cut(s) 382, 729, 733, 818, 892, 1058, 1223, 1645, 1695
BseYI CCCAGC 1 cut(s) 1645
BsgI GTGCAG 2 cut(s) 736, 1287
Bsh1236I CGCG 2 cut(s) 284, 1677
BshFI GGCC 5 cut(s) 405, 572, 1165, 1707, 1892
BshNI GGYRCC 1 cut(s) 648
BshVI ATCGAT 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 416
BsiSI CCGG 2 cut(s) 505, 1894
BslFI GGGAC 3 cut(s) 20, 420, 1823
BslI CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1847
BsmAI GTCTC 3 cut(s) 75, 389, 834
BsmFI GGGAC 3 cut(s) 20, 420, 1823
BsnI GGCC 5 cut(s) 405, 572, 1165, 1707, 1892
Bsp1286I GDGCHC 2 cut(s) 416, 1359
Bsp1720I GCTNAGC 1 cut(s) 1203
BspACI CCGC 6 cut(s) 522, 697, 783, 1675, 1681, 1823
BspANI GGCC 5 cut(s) 405, 572, 1165, 1707, 1892
BspCNI CTCAG 5 cut(s) 785, 892, 1009, 1192, 1495
BspDI ATCGAT 1 cut(s) 198
BspFNI CGCG 2 cut(s) 284, 1677
BspHI TCATGA 3 cut(s) 175, 837, 1312
BspLI GGNNCC 4 cut(s) 311, 436, 650, 1706
BspMI ACCTGC 1 cut(s) 1259
BspPI GGATC 4 cut(s) 488, 1373, 1553, 1649
BspQI GCTCTTC 1 cut(s) 1479
BspT107I GGYRCC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 792
BsrI ACTGG 3 cut(s) 39, 438, 1284
BssECI CCNNGG 5 cut(s) 209, 668, 1197, 1583, 1840
BssNAI GTATAC 1 cut(s) 1175
BssT1I CCWWGG 2 cut(s) 209, 1583
Bst1107I GTATAC 1 cut(s) 1175
Bst2UI CCWGG 4 cut(s) 653, 669, 1198, 1842
Bst4CI ACNGT 6 cut(s) 31, 97, 418, 952, 1428, 1579
Bst6I CTCTTC 1 cut(s) 1479
BstBAI YACGTR 1 cut(s) 1148
BstC8I GCNNGC 6 cut(s) 128, 282, 1209, 1434, 1526, 1681
BstDEI CTNAG 7 cut(s) 330, 772, 900, 1017, 1179, 1203, 1503
BstF5I GGATG 5 cut(s) 30, 222, 223, 1450, 1738
BstFNI CGCG 2 cut(s) 284, 1677
BstH2I RGCGCY 2 cut(s) 1646, 2017
BstHHI GCGC 6 cut(s) 147, 286, 1645, 1679, 1785, 2016
BstMAI GTCTC 3 cut(s) 75, 389, 834
BstMWI GCNNNNNNNGC 5 cut(s) 411, 803, 1208, 1642, 1683
BstNI CCWGG 4 cut(s) 653, 669, 1198, 1842
BstNSI RCATGY 1 cut(s) 254
BstPAI GACNNNNGTC 1 cut(s) 32
BstSCI CCNGG 6 cut(s) 503, 651, 667, 1196, 1840, 1892
BstSFI CTRYAG 1 cut(s) 1575
BstSLI GKGCMC 2 cut(s) 416, 1359
BstUI CGCG 2 cut(s) 284, 1677
BstV1I GCAGC 9 cut(s) 382, 729, 733, 818, 892, 1058, 1223, 1645, 1695
BstV2I GAAGAC 3 cut(s) 699, 912, 953
BstX2I RGATCY 1 cut(s) 1688
BstYI RGATCY 1 cut(s) 1688
BstZ17I GTATAC 1 cut(s) 1175
Bsu15I ATCGAT 1 cut(s) 198
Bsu36I CCTNAGG 1 cut(s) 1179
BsuI GTATCC 1 cut(s) 1756
BsuRI GGCC 5 cut(s) 405, 572, 1165, 1707, 1892
BsuTUI ATCGAT 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 1148
BtrI CACGTC 1 cut(s) 1931
BtsCI GGATG 5 cut(s) 30, 222, 223, 1450, 1738
BtsIMutI CAGTG 1 cut(s) 46
BveI ACCTGC 1 cut(s) 1259
Cac8I GCNNGC 6 cut(s) 128, 282, 1209, 1434, 1526, 1681
CciI TCATGA 3 cut(s) 175, 837, 1312
CfoI GCGC 6 cut(s) 147, 286, 1645, 1679, 1785, 2016
Cfr13I GGNCC 6 cut(s) 268, 434, 570, 679, 1705, 1891
ClaI ATCGAT 1 cut(s) 198
CseI GACGC 1 cut(s) 119
CsiI ACCWGGT 1 cut(s) 651
Csp6I GTAC 7 cut(s) 75, 640, 649, 992, 1008, 1557, 1580
CviQI GTAC 7 cut(s) 75, 640, 649, 992, 1008, 1557, 1580
DdeI CTNAG 7 cut(s) 330, 772, 900, 1017, 1179, 1203, 1503
DraI TTTAAA 1 cut(s) 1116
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 1479
EarI CTCTTC 1 cut(s) 1479
Eco130I CCWWGG 2 cut(s) 209, 1583
Eco147I AGGCCT 1 cut(s) 1165
Eco32I GATATC 1 cut(s) 1333
Eco47I GGWCC 3 cut(s) 268, 434, 679
Eco47III AGCGCT 1 cut(s) 1644
Eco57I CTGAAG 3 cut(s) 371, 957, 1103
Eco72I CACGTG 1 cut(s) 1148
Eco81I CCTNAGG 1 cut(s) 1179
EcoRII CCWGG 4 cut(s) 651, 667, 1196, 1840
EcoRV GATATC 1 cut(s) 1333
EcoT14I CCWWGG 2 cut(s) 209, 1583
ErhI CCWWGG 2 cut(s) 209, 1583
FalI AAGNNNNNCTT 6 cut(s) 469, 501, 599, 631, 795, 827
FaqI GGGAC 3 cut(s) 20, 420, 1823
FauI CCCGC 1 cut(s) 1688
FbaI TGATCA 1 cut(s) 1864
FblI GTMKAC 2 cut(s) 1174, 1570
FokI GGATG 5 cut(s) 37, 209, 230, 1457, 1745
FspBI CTAG 9 cut(s) 210, 567, 1307, 1584, 1659, 1794, 1812, 1883, 1926
FspI TGCGCA 1 cut(s) 146
GlaI GCGC 6 cut(s) 146, 285, 1644, 1678, 1784, 2015
GsaI CCCAGC 1 cut(s) 1649
GsuI CTGGAG 1 cut(s) 1464
HaeII RGCGCY 2 cut(s) 1646, 2017
HaeIII GGCC 5 cut(s) 405, 572, 1165, 1707, 1892
HapII CCGG 2 cut(s) 505, 1894
HgaI GACGC 1 cut(s) 119
HhaI GCGC 6 cut(s) 147, 286, 1645, 1679, 1785, 2016
Hin6I GCGC 6 cut(s) 145, 284, 1643, 1677, 1783, 2014
HinP1I GCGC 6 cut(s) 145, 284, 1643, 1677, 1783, 2014
HincII GTYRAC 2 cut(s) 1476, 1571
HindII GTYRAC 2 cut(s) 1476, 1571
HinfI GANTC 8 cut(s) 362, 382, 1066, 1252, 1477, 1531, 1567, 1859
HpaII CCGG 2 cut(s) 505, 1894
HphI GGTGA 3 cut(s) 163, 371, 1856
Hpy166II GTNNAC 7 cut(s) 103, 414, 1175, 1276, 1476, 1571, 1611
Hpy188I TCNGA 5 cut(s) 901, 937, 1071, 1753, 1864
Hpy8I GTNNAC 7 cut(s) 103, 414, 1175, 1276, 1476, 1571, 1611
HpyAV CCTTC 5 cut(s) 40, 495, 1213, 1415, 1486
HpyCH4III ACNGT 6 cut(s) 31, 97, 418, 952, 1428, 1579
HpyCH4IV ACGT 2 cut(s) 1147, 1930
HpyCH4V TGCA 9 cut(s) 7, 305, 378, 414, 717, 864, 880, 1046, 1268
HpyF10VI GCNNNNNNNGC 5 cut(s) 411, 803, 1208, 1642, 1683
HpyF3I CTNAG 7 cut(s) 330, 772, 900, 1017, 1179, 1203, 1503
HpySE526I ACGT 2 cut(s) 1147, 1930
HspAI GCGC 6 cut(s) 145, 284, 1643, 1677, 1783, 2014
KpnI GGTACC 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 1864
LguI GCTCTTC 1 cut(s) 1479
Lsp1109I GCAGC 9 cut(s) 382, 729, 733, 818, 892, 1058, 1223, 1645, 1695
LweI GCATC 3 cut(s) 365, 729, 1125
MabI ACCWGGT 1 cut(s) 651
MaeI CTAG 9 cut(s) 210, 567, 1307, 1584, 1659, 1794, 1812, 1883, 1926
MaeII ACGT 2 cut(s) 1147, 1930
MaeIII GTNAC 4 cut(s) 609, 919, 1027, 1148
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 1 cut(s) 1688
MhlI GDGCHC 2 cut(s) 416, 1359
MluCI AATT 9 cut(s) 13, 169, 203, 489, 1297, 1344, 1589, 1650, 1668
MlyI GAGTC 4 cut(s) 391, 1471, 1576, 1853
MroXI GAANNNNTTC 2 cut(s) 50, 544
MseI TTAA 7 cut(s) 120, 825, 1115, 1391, 1671, 1728, 1854
MslI CAYNNNNRTG 1 cut(s) 926
MspA1I CMGCKG 1 cut(s) 1636
MspI CCGG 2 cut(s) 505, 1894
MspR9I CCNGG 6 cut(s) 505, 653, 669, 1198, 1842, 1894
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 4 cut(s) 653, 669, 1198, 1842
MvnI CGCG 2 cut(s) 284, 1677
MwoI GCNNNNNNNGC 5 cut(s) 411, 803, 1208, 1642, 1683
NciI CCSGG 2 cut(s) 505, 1894
NlaIV GGNNCC 4 cut(s) 311, 436, 650, 1706
NmuCI GTSAC 3 cut(s) 609, 919, 1148
NsbI TGCGCA 1 cut(s) 146
NspI RCATGY 1 cut(s) 254
PagI TCATGA 3 cut(s) 175, 837, 1312
PaqCI CACCTGC 1 cut(s) 1259
PceI AGGCCT 1 cut(s) 1165
PciI ACATGT 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 1479
PdmI GAANNNNTTC 2 cut(s) 50, 544
PfeI GAWTC 4 cut(s) 362, 1066, 1252, 1531
PleI GAGTC 4 cut(s) 390, 1471, 1575, 1853
PmaCI CACGTG 1 cut(s) 1148
PmlI CACGTG 1 cut(s) 1148
PpsI GAGTC 4 cut(s) 390, 1471, 1575, 1853
Ppu21I YACGTR 1 cut(s) 1148
PscI ACATGT 1 cut(s) 250
PshAI GACNNNNGTC 1 cut(s) 32
PshBI ATTAAT 1 cut(s) 120
PsiI TTATAA 1 cut(s) 422
Psp6I CCWGG 4 cut(s) 651, 667, 1196, 1840
PspCI CACGTG 1 cut(s) 1148
PspFI CCCAGC 1 cut(s) 1645
PspGI CCWGG 4 cut(s) 651, 667, 1196, 1840
PspN4I GGNNCC 4 cut(s) 311, 436, 650, 1706
PspPI GGNCC 6 cut(s) 268, 434, 570, 679, 1705, 1891
PsuI RGATCY 1 cut(s) 1688
PvuII CAGCTG 1 cut(s) 1636
RsaI GTAC 7 cut(s) 76, 641, 650, 993, 1009, 1558, 1581
RsaNI GTAC 7 cut(s) 75, 640, 649, 992, 1008, 1557, 1580
RseI CAYNNNNRTG 1 cut(s) 926
SalI GTCGAC 1 cut(s) 1569
SapI GCTCTTC 1 cut(s) 1479
SaqAI TTAA 7 cut(s) 120, 825, 1115, 1391, 1671, 1728, 1854
Sau96I GGNCC 6 cut(s) 268, 434, 570, 679, 1705, 1891
ScaI AGTACT 2 cut(s) 641, 1009
SchI GAGTC 4 cut(s) 391, 1471, 1576, 1853
ScrFI CCNGG 6 cut(s) 505, 653, 669, 1198, 1842, 1894
SduI GDGCHC 2 cut(s) 416, 1359
SexAI ACCWGGT 1 cut(s) 651
SfaNI GCATC 3 cut(s) 365, 729, 1125
SfcI CTRYAG 1 cut(s) 1575
SinI GGWCC 3 cut(s) 268, 434, 679
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 3 cut(s) 386, 643, 1400
SmoI CTYRAG 3 cut(s) 386, 643, 1400
Sse9I AATT 9 cut(s) 13, 169, 203, 489, 1297, 1344, 1589, 1650, 1668
SseBI AGGCCT 1 cut(s) 1165
SsiI CCGC 6 cut(s) 522, 697, 783, 1675, 1681, 1823
SspI AATATT 1 cut(s) 513
SspMI CTAG 9 cut(s) 210, 567, 1307, 1584, 1659, 1794, 1812, 1883, 1926
StuI AGGCCT 1 cut(s) 1165
StyD4I CCNGG 6 cut(s) 503, 651, 667, 1196, 1840, 1892
StyI CCWWGG 2 cut(s) 209, 1583
TaaI ACNGT 6 cut(s) 31, 97, 418, 952, 1428, 1579
TaiI ACGT 2 cut(s) 1150, 1933
TaqI TCGA 3 cut(s) 198, 1570, 1787
TaqII GACCGA 1 cut(s) 696
TasI AATT 9 cut(s) 13, 169, 203, 489, 1297, 1344, 1589, 1650, 1668
TatI WGTACW 3 cut(s) 639, 1007, 1556
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 4 cut(s) 362, 1066, 1252, 1531
Tru1I TTAA 7 cut(s) 120, 825, 1115, 1391, 1671, 1728, 1854
Tru9I TTAA 7 cut(s) 120, 825, 1115, 1391, 1671, 1728, 1854
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 3 cut(s) 609, 919, 1148
TseI GCWGC 9 cut(s) 395, 717, 746, 806, 880, 1046, 1211, 1633, 1683
Tsp45I GTSAC 3 cut(s) 609, 919, 1148
TspRI CASTG 1 cut(s) 46
VneI GTGCAC 1 cut(s) 412
VpaK11BI GGWCC 3 cut(s) 268, 434, 679
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 3 cut(s) 203, 1344, 1589
XbaI TCTAGA 2 cut(s) 1793, 1811
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XmaJI CCTAGG 2 cut(s) 209, 1583
XmiI GTMKAC 2 cut(s) 1174, 1570
XmnI GAANNNNTTC 2 cut(s) 50, 544
XspI CTAG 9 cut(s) 210, 567, 1307, 1584, 1659, 1794, 1812, 1883, 1926
ZrmI AGTACT 2 cut(s) 641, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.