Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001573

Physical Location & Seq

Genomic Coordinates Reverse (-)

23505323 .. 23506606

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0249700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGACCAGTGATAATTTCATGAACCAAGGGGAGAATGCTAGTGGAAGTGGCACAAAATCTGCGGAAATAAAACGCAAACGTCGCCCTACTAAAAAGTGTAAACGAACATTATTTGGTGAGAAAAGTGATAATGTGCTCAACCAAGAGAAGAATCCTACTGGAAGTGGACTCAATTCTGTGAAAGTGCAACGTAAACGTCCGCCTACTAAAAAGGGCAAAAAAGCATCTGGTCATCAGAGAAGTTCTAGGTTTCGCGGAGTTACGAGGTACCCAGGACATTTTGAAGCATTTCTATGGGATAATTCTGATCCACAAGTGAAGGGCAAGACCGGCGGATTTCGAGAAGAAGAGCAAGCTGCCAGAGCACATGATCTAGCTGCTTTGAAGTATTGGGGCGACTCTACCGCATTAAACTTCCCTGTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1 NOGCT

Protein Analysis

142

Amino Acids

15.84

Weight (kDa)

10.23

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10300 AT1G10300 AT1G10300 AT1G50920
fragaria_vesca	FvH4_3g28930 FvH4_3g28930 FvH4_6g37740
malus_domestica	MD06G1031200.v1.1 MD11G1222700.v1.1 MD16G1277600.v1.1
prunus_persica	Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.4G247400_v2.0.a1 Prupe.5G045700_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.6G149400_v2.0.a1
pyrus_communis	pycom03g13360 pycom06g02600 pycom11g16960 pycom11g19650
rosa_chinensis	RchiOBHm_Chr3g0491451 RchiOBHm_Chr5g0051831 RchiOBHm_Chr5g0051911
rosa_laevigata	RLG00000034859 RLG00000034861
rosa_multiflora	Rmu_co8440613.1_g000002 Rmu_sc0001267.1_g000040
rosa_roxburghii	Rroxscaffold_1G00027370 Rroxscaffold_1G00027400
rosa_rugosa	Rorug03G0248800 Rorug03G0248800 Rorug03G0249700 Rorug05G0276600 Rorug05G0276700 Rorug05G0276800
rosa_samantha	Rh3AG298700 Rh3DG332500 Rh3DG333200 Rh5AG348600 Rh5AG348900 Rh5BG359100 Rh5BG359200 Rh5BG359900 Rh5CG384700 Rh5CG384900 Rh5DG374600
rosa_wichuraiana	Rw3G026370 Rw5G032900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	267
AccII	CGCG	1 cut(s)	255
AciI	CCGC	5 cut(s)	62, 200, 255, 333, 405
AclWI	GGATC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	284, 385
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	2 cut(s)	356, 377
AluI	AGCT	2 cut(s)	356, 377
Alw21I	GWGCWC	2 cut(s)	138, 367
AlwI	GGATC	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	356, 377
Asp700I	GAANNNNTTC	1 cut(s)	288
Asp718I	GGTACC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	138, 367
BbvI	GCAGC	2 cut(s)	343, 364
BciT130I	CCWGG	1 cut(s)	273
BfaI	CTAG	3 cut(s)	39, 246, 374
BisI	GCNGC	2 cut(s)	357, 378
BlsI	GCNGC	2 cut(s)	358, 379
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	25, 271
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	6, 163
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	25, 271
BseNI	ACTGG	2 cut(s)	6, 163
BseXI	GCAGC	2 cut(s)	343, 364
Bsh1236I	CGCG	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	138, 367
BsiSI	CCGG	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	138, 367
Bsp143I	GATC	2 cut(s)	307, 370
BspACI	CCGC	5 cut(s)	62, 200, 255, 333, 405
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	6, 163
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	25, 271
BssMI	GATC	2 cut(s)	307, 370
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	354
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	310, 373
BstMBI	GATC	2 cut(s)	307, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 330, 362
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	343, 364
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	354
CciI	TCATGA	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	2 cut(s)	19, 368
CviJI	RGCY	2 cut(s)	356, 377
CviKI_1	RGCY	2 cut(s)	356, 377
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	2 cut(s)	309, 372
DpnII	GATC	2 cut(s)	307, 370
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
EciI	GGCGGA	2 cut(s)	189, 348
Eco130I	CCWWGG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	2 cut(s)	22, 371
FaiI	YATR	4 cut(s)	20, 295, 369, 424
FatI	CATG	2 cut(s)	18, 367
Fnu4HI	GCNGC	2 cut(s)	357, 378
Fsp4HI	GCNGC	2 cut(s)	357, 378
FspBI	CTAG	3 cut(s)	39, 246, 374
GluI	GCNGC	2 cut(s)	357, 378
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	2 cut(s)	22, 371
HinfI	GANTC	3 cut(s)	151, 168, 398
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	3 cut(s)	101, 167, 194
Hpy188I	TCNGA	2 cut(s)	237, 307
Hpy188III	TCNNGA	2 cut(s)	19, 341
Hpy8I	GTNNAC	3 cut(s)	101, 167, 194
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	313
HpyCH4IV	ACGT	3 cut(s)	79, 190, 196
HpyCH4V	TGCA	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 330, 362
HpySE526I	ACGT	3 cut(s)	79, 190, 196
Hsp92II	CATG	2 cut(s)	22, 371
KpnI	GGTACC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	307, 370
LguI	GCTCTTC	1 cut(s)	342
LpnPI	CCDG	7 cut(s)	19, 144, 213, 258, 285, 343, 373
Lsp1109I	GCAGC	2 cut(s)	343, 364
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	3 cut(s)	39, 246, 374
MaeII	ACGT	3 cut(s)	79, 190, 196
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	309, 372
MboI	GATC	2 cut(s)	307, 370
MboII	GAAGA	3 cut(s)	160, 356, 359
MhlI	GDGCHC	2 cut(s)	138, 367
MluCI	AATT	3 cut(s)	13, 172, 301
MlyI	GAGTC	2 cut(s)	162, 392
MnlI	CCTC	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	2 cut(s)	410, 427
MslI	CAYNNNNRTG	1 cut(s)	292
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	81, 330, 362
NdeII	GATC	2 cut(s)	307, 370
NlaIII	CATG	2 cut(s)	22, 371
NlaIV	GGNNCC	1 cut(s)	269
PagI	TCATGA	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	342
PctI	GAATGC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	358, 379
PleI	GAGTC	2 cut(s)	162, 392
PpsI	GAGTC	2 cut(s)	162, 392
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	410, 427
SatI	GCNGC	2 cut(s)	357, 378
Sau3AI	GATC	2 cut(s)	307, 370
SchI	GAGTC	2 cut(s)	162, 392
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	2 cut(s)	138, 367
SetI	ASST	7 cut(s)	82, 193, 199, 251, 269, 358, 379
SfaNI	GCATC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	292
Sse9I	AATT	3 cut(s)	13, 172, 301
SsiI	CCGC	5 cut(s)	62, 200, 255, 333, 405
SspMI	CTAG	3 cut(s)	39, 246, 374
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	25
TaiI	ACGT	3 cut(s)	82, 193, 199
TaqI	TCGA	1 cut(s)	340
TasI	AATT	3 cut(s)	13, 172, 301
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	410, 427
Tru9I	TTAA	2 cut(s)	410, 427
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	356, 377
TspDTI	ATGAA	2 cut(s)	7, 35
TspRI	CASTG	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	3 cut(s)	39, 246, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.