RchiOBHm_Chr5g0051911

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001573
Physical Location & Seq
Forward (+)
53387571 .. 53388526
956 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32935

Sequence Viewer

Length: 876 bp
ATGGTCCAATATAATTTCAAGAAGATGACTGTTGTTCCCGGTGGGAAGGATTTCATTGATATTATCCTATCTCAAACCCAGCGGCAGGCCCCAACTGTAGTCCACAAGGGTTCTGCCATTGACCGCGTGCGTAAGTTATATACGCGCAAACTCTATACTATCATTGATGAATTTCCTAGGCTGGAAGACATCCACCCTTTCTACGGCGATCTTCTGCATGTTCTCTACAACAAGGACCATTACAAGCTTGCGCTTGGTCAAATAAATACTGCAAGGAACCTTACTTCTAAGATTACTAAAGATTATGTCAAGTTATTGAAGTATGGTGATTCACTTTACCGATGCAAGAGTCTCAAGGTTGCTGCTCTTGGCCGTATGTGCACGGTTGTAAAGAGGATTGGCCCTAGTTTAGCTTATCTAGAACAAATTAGGCAACACATGGCCAGGCGGCCTTCAATTGACCCAAACACCAGGACAATATTGATTTGCGGCTATCCCAATGTCGGAAAGAGTTCATTCATCAACAAGATCACCAGAGCCGATGTTGATGTCCAGCCTTATGCTTTTACTACAAAGTCACTCTTTGTTATTGATACACCTGGGATTTTGGACCGACCATTTGAAGACCGTAACATTATTGAGATGTGCAGCATCACAGCATTGGCACATTTGAGAGCTGCTGTTCTGTTCTTCTTGGACATCTCAGGGTCTTGTGGTTATACCATTGCCCAACAAGCTGCCCTTTTTCACAGCATTAAGTCTCTGTTCATGAACAAACCATTGATTATAGTCTGCAACAAGACTGATTTGCAGCCATTGGAGGGCATATCTGAGGAAGACATGAAGTTGGTCAGTGGTCACAGAGATGAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

291

Amino Acids

33.02

Weight (kDa)

9.38

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOG1_N PF17835 6 - 154 7.3e-49 NOG1 N-terminal helical domain
MMR_HSR1 PF01926 160 - 267 1.6e-12 50S ribosome-binding GTPase
NOG1 PF06858 213 - 269 2e-25 Nucleolar GTP-binding protein 1 (NOG1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 126, 145
AciI CCGC 4 cut(s) 82, 124, 448, 489
AcoI YGGCCR 2 cut(s) 370, 441
AcsI RAATTY 1 cut(s) 170
AfiI CCNNNNNNNGG 4 cut(s) 85, 203, 503, 821
AgsI TTSAA 4 cut(s) 19, 319, 456, 623
AjnI CCWGG 3 cut(s) 443, 470, 598
AluBI AGCT 5 cut(s) 247, 413, 677, 737, 873
AluI AGCT 5 cut(s) 247, 413, 677, 737, 873
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 2 cut(s) 356, 765
Alw44I GTGCAC 1 cut(s) 379
AoxI GGCC 5 cut(s) 87, 370, 400, 441, 449
ApaLI GTGCAC 1 cut(s) 379
ApeKI GCWGC 5 cut(s) 362, 648, 677, 737, 811
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
Asp700I GAANNNNTTC 2 cut(s) 50, 511
AspA2I CCTAGG 1 cut(s) 176
AspLEI GCGC 2 cut(s) 147, 253
AspS9I GGNCC 5 cut(s) 4, 88, 235, 401, 610
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 338, 523
AvaII GGWCC 3 cut(s) 4, 235, 610
AvrII CCTAGG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 383
BalI TGGCCA 1 cut(s) 443
BbsI GAAGAC 3 cut(s) 192, 630, 843
Bbv12I GWGCWC 1 cut(s) 383
BbvI GCAGC 5 cut(s) 349, 660, 664, 724, 823
BceAI ACGGC 2 cut(s) 220, 357
BciT130I CCWGG 3 cut(s) 445, 472, 600
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 356, 765
BfaI CTAG 3 cut(s) 177, 405, 419
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 8 cut(s) 83, 363, 449, 490, 649, 678, 738, 812
BlnI CCTAGG 1 cut(s) 176
BlsI GCNGC 8 cut(s) 84, 364, 450, 491, 650, 679, 739, 813
Bme1390I CCNGG 4 cut(s) 39, 445, 472, 600
Bme18I GGWCC 3 cut(s) 4, 235, 610
BmgT120I GGNCC 5 cut(s) 4, 88, 235, 401, 610
BmiI GGNNCC 2 cut(s) 90, 278
BmrFI CCNGG 4 cut(s) 39, 445, 472, 600
BmsI GCATC 2 cut(s) 332, 660
BpiI GAAGAC 3 cut(s) 192, 630, 843
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 176, 599
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 203, 503, 821
Bse3DI GCAATG 1 cut(s) 723
BseBI CCWGG 3 cut(s) 445, 472, 600
BseDI CCNNGG 2 cut(s) 176, 599
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 4 cut(s) 85, 203, 503, 821
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 2 cut(s) 717, 822
BseSI GKGCMC 1 cut(s) 383
BseXI GCAGC 5 cut(s) 349, 660, 664, 724, 823
BseYI CCCAGC 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 667
Bsh1236I CGCG 2 cut(s) 126, 145
BshFI GGCC 5 cut(s) 89, 372, 402, 443, 451
BsiHKAI GWGCWC 1 cut(s) 383
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 4 cut(s) 85, 203, 503, 821
BsmAI GTCTC 2 cut(s) 356, 765
BsnI GGCC 5 cut(s) 89, 372, 402, 443, 451
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 2 cut(s) 208, 528
BspACI CCGC 4 cut(s) 82, 124, 448, 489
BspANI GGCC 5 cut(s) 89, 372, 402, 443, 451
BspCNI CTCAG 2 cut(s) 716, 823
BspFNI CGCG 2 cut(s) 126, 145
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 2 cut(s) 90, 278
BsrDI GCAATG 1 cut(s) 723
BssECI CCNNGG 2 cut(s) 176, 599
BssMI GATC 2 cut(s) 208, 528
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 3 cut(s) 445, 472, 600
Bst4CI ACNGT 4 cut(s) 31, 97, 385, 629
BstC8I GCNNGC 3 cut(s) 87, 128, 249
BstDEI CTNAG 3 cut(s) 288, 703, 831
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 2 cut(s) 126, 145
BstHHI GCGC 2 cut(s) 147, 253
BstKTI GATC 2 cut(s) 211, 531
BstMAI GTCTC 2 cut(s) 356, 765
BstMBI GATC 2 cut(s) 208, 528
BstMWI GCNNNNNNNGC 2 cut(s) 378, 734
BstNI CCWGG 3 cut(s) 445, 472, 600
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 4 cut(s) 37, 443, 470, 598
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 383
BstUI CGCG 2 cut(s) 126, 145
BstV1I GCAGC 5 cut(s) 349, 660, 664, 724, 823
BstV2I GAAGAC 3 cut(s) 192, 630, 843
BsuRI GGCC 5 cut(s) 89, 372, 402, 443, 451
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 859
Cac8I GCNNGC 3 cut(s) 87, 128, 249
CciI TCATGA 1 cut(s) 768
CfoI GCGC 2 cut(s) 147, 253
Cfr13I GGNCC 5 cut(s) 4, 88, 235, 401, 610
CviAII CATG 4 cut(s) 218, 439, 769, 841
DdeI CTNAG 3 cut(s) 288, 703, 831
DpnI GATC 2 cut(s) 210, 530
DpnII GATC 2 cut(s) 208, 528
EaeI YGGCCR 2 cut(s) 370, 441
Eco130I CCWWGG 1 cut(s) 176
Eco47I GGWCC 3 cut(s) 4, 235, 610
EcoO109I RGGNCCY 1 cut(s) 88
EcoRII CCWGG 3 cut(s) 443, 470, 598
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 4 cut(s) 221, 442, 772, 844
FalI AAGNNNNNCTT 4 cut(s) 566, 598, 726, 758
FatI CATG 4 cut(s) 217, 438, 768, 840
Fnu4HI GCNGC 8 cut(s) 83, 363, 449, 490, 649, 678, 738, 812
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 8 cut(s) 83, 363, 449, 490, 649, 678, 738, 812
FspBI CTAG 3 cut(s) 177, 405, 419
GlaI GCGC 2 cut(s) 146, 252
GluI GCNGC 8 cut(s) 83, 363, 449, 490, 649, 678, 738, 812
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 5 cut(s) 89, 372, 402, 443, 451
HapII CCGG 1 cut(s) 39
HhaI GCGC 2 cut(s) 147, 253
Hin1II CATG 4 cut(s) 221, 442, 772, 844
Hin6I GCGC 2 cut(s) 145, 251
HinP1I GCGC 2 cut(s) 145, 251
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 329, 349
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 338, 523
Hpy166II GTNNAC 2 cut(s) 103, 381
Hpy188I TCNGA 2 cut(s) 506, 832
Hpy188III TCNNGA 3 cut(s) 19, 419, 769
Hpy8I GTNNAC 2 cut(s) 103, 381
HpyAV CCTTC 2 cut(s) 40, 462
HpyCH4III ACNGT 4 cut(s) 31, 97, 385, 629
HpyCH4V TGCA 7 cut(s) 217, 272, 345, 381, 648, 795, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 734
HpyF3I CTNAG 3 cut(s) 288, 703, 831
Hsp92II CATG 4 cut(s) 221, 442, 772, 844
HspAI GCGC 2 cut(s) 145, 251
Kzo9I GATC 2 cut(s) 208, 528
Lsp1109I GCAGC 5 cut(s) 349, 660, 664, 724, 823
LweI GCATC 2 cut(s) 332, 660
MaeI CTAG 3 cut(s) 177, 405, 419
MaeIII GTNAC 3 cut(s) 576, 629, 857
MalI GATC 2 cut(s) 210, 530
MboI GATC 2 cut(s) 208, 528
MboII GAAGA 6 cut(s) 34, 197, 203, 635, 682, 848
MfeI CAATTG 1 cut(s) 456
MhlI GDGCHC 1 cut(s) 383
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 4 cut(s) 13, 170, 426, 456
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 484
MnlI CCTC 3 cut(s) 387, 814, 826
Mox20I TGGCCA 1 cut(s) 443
MroXI GAANNNNTTC 2 cut(s) 50, 511
MscI TGGCCA 1 cut(s) 443
MseI TTAA 1 cut(s) 756
MslI CAYNNNNRTG 1 cut(s) 864
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 4 cut(s) 39, 445, 472, 600
MunI CAATTG 1 cut(s) 456
MvaI CCWGG 3 cut(s) 445, 472, 600
MvnI CGCG 2 cut(s) 126, 145
MwoI GCNNNNNNNGC 2 cut(s) 378, 734
NciI CCSGG 1 cut(s) 39
NdeII GATC 2 cut(s) 208, 528
NlaIII CATG 4 cut(s) 221, 442, 772, 844
NlaIV GGNNCC 2 cut(s) 90, 278
NmuCI GTSAC 2 cut(s) 576, 857
NspI RCATGY 1 cut(s) 221
PagI TCATGA 1 cut(s) 768
PdmI GAANNNNTTC 2 cut(s) 50, 511
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 8 cut(s) 84, 364, 450, 491, 650, 679, 739, 813
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
Psp6I CCWGG 3 cut(s) 443, 470, 598
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 3 cut(s) 443, 470, 598
PspN4I GGNNCC 2 cut(s) 90, 278
PspPI GGNCC 5 cut(s) 4, 88, 235, 401, 610
RseI CAYNNNNRTG 1 cut(s) 864
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 8 cut(s) 83, 363, 449, 490, 649, 678, 738, 812
Sau3AI GATC 2 cut(s) 208, 528
Sau96I GGNCC 5 cut(s) 4, 88, 235, 401, 610
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 4 cut(s) 39, 445, 472, 600
SduI GDGCHC 1 cut(s) 383
SetI ASST 8 cut(s) 249, 282, 360, 415, 601, 679, 739, 875
SfaNI GCATC 2 cut(s) 332, 660
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 3 cut(s) 4, 235, 610
SmiMI CAYNNNNRTG 1 cut(s) 864
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 4 cut(s) 13, 170, 426, 456
SsiI CCGC 4 cut(s) 82, 124, 448, 489
SspI AATATT 1 cut(s) 480
SspMI CTAG 3 cut(s) 177, 405, 419
StyD4I CCNGG 4 cut(s) 37, 443, 470, 598
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 4 cut(s) 31, 97, 385, 629
TaqII GACCGA 1 cut(s) 627
TasI AATT 4 cut(s) 13, 170, 426, 456
TauI GCSGC 3 cut(s) 85, 451, 492
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 2 cut(s) 576, 857
TseI GCWGC 5 cut(s) 362, 648, 677, 737, 811
Tsp45I GTSAC 2 cut(s) 576, 857
TspDTI ATGAA 7 cut(s) 43, 183, 504, 508, 757, 785, 857
TspRI CASTG 1 cut(s) 859
VneI GTGCAC 1 cut(s) 379
VpaK11BI GGWCC 3 cut(s) 4, 235, 610
XapI RAATTY 1 cut(s) 170
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 221
XmaJI CCTAGG 1 cut(s) 176
XmnI GAANNNNTTC 2 cut(s) 50, 511
XspI CTAG 3 cut(s) 177, 405, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.