Rorug05G0276700

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001573
Physical Location & Seq
Reverse (-)
31286421 .. 31288042
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0276700.1

Sequence Viewer

Length: 396 bp
ATGGAGAGCTACTTGGACAACGACTGGAACGTCAAGCAGGACTCAAGCAACTGTTGGAAAGCCGTCGGCCGCGTCGTCAAGAAAGTTGCCAGGAGGGTCCGACGACACGGCGATCTTGCCAAGCCCGCCGAGGATGGGAAGAAGAAGCATCAAATCCGGAAGAAGATCCATCTGGCAGTACTGTCTAATCAAAGACCTGCAAGAGCTGCAATGCAGCTTATAAAGGATCTAGCTCAGGGCAGGACACCCGAAACTGTGCGTAGGAGGGGCCCTGGATTGAGATCAAGATCCTCCTCAGGTCACTACAGTTGGCCGCCGTCTTGTGAGAGAGCTCAAAATCGTTATGGTGTTGAGGGGGTTGCAGGAATCGATGGCAGTGCACTATCTTATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

131

Amino Acids

14.73

Weight (kDa)

10.39

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AasI GACNNNNNNGTC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 205
AccII CGCG 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 156
AciI CCGC 3 cut(s) 70, 126, 314
AclWI GGATC 3 cut(s) 160, 234, 282
AcoI YGGCCR 2 cut(s) 67, 311
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 135
AjnI CCWGG 2 cut(s) 89, 271
AluBI AGCT 5 cut(s) 9, 206, 217, 233, 332
AluI AGCT 5 cut(s) 9, 206, 217, 233, 332
Alw21I GWGCWC 2 cut(s) 334, 382
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 3 cut(s) 160, 234, 282
Aor13HI TCCGGA 1 cut(s) 156
AoxI GGCC 3 cut(s) 67, 268, 311
ApaI GGGCCC 1 cut(s) 272
ApaLI GTGCAC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 206, 214
AspS9I GGNCC 3 cut(s) 97, 268, 269
AvaII GGWCC 1 cut(s) 97
AxyI CCTNAGG 1 cut(s) 295
BaeGI GKGCMC 2 cut(s) 272, 382
BanII GRGCYC 2 cut(s) 272, 334
Bbv12I GWGCWC 2 cut(s) 334, 382
BbvI GCAGC 2 cut(s) 193, 226
BccI CCATC 3 cut(s) 128, 177, 365
BceAI ACGGC 3 cut(s) 47, 124, 301
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BciT130I CCWGG 2 cut(s) 91, 273
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 304
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 4 cut(s) 70, 207, 215, 314
BlsI GCNGC 4 cut(s) 71, 208, 216, 315
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 91, 273
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 97, 268, 269
BmiI GGNNCC 3 cut(s) 98, 269, 270
BmrFI CCNGG 2 cut(s) 91, 273
BmsI GCATC 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 28
Bsa29I ATCGAT 1 cut(s) 369
BsaBI GATNNNNATC 2 cut(s) 280, 286
BsaJI CCNNGG 2 cut(s) 129, 271
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 2 cut(s) 280, 286
BseAI TCCGGA 1 cut(s) 156
BseBI CCWGG 2 cut(s) 91, 273
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 129, 271
BseGI GGATG 1 cut(s) 139
BseJI GATNNNNATC 2 cut(s) 280, 286
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 248, 309
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 283
BseSI GKGCMC 2 cut(s) 272, 382
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 193, 226
Bsh1236I CGCG 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 69, 270, 313
BshVI ATCGAT 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 334, 382
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 135
BsnI GGCC 3 cut(s) 69, 270, 313
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 3 cut(s) 272, 334, 382
Bsp13I TCCGGA 1 cut(s) 156
Bsp143I GATC 5 cut(s) 112, 165, 226, 281, 287
BspACI CCGC 3 cut(s) 70, 126, 314
BspANI GGCC 3 cut(s) 69, 270, 313
BspCNI CTCAG 2 cut(s) 247, 308
BspDI ATCGAT 1 cut(s) 369
BspEI TCCGGA 1 cut(s) 156
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 98, 269, 270
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 3 cut(s) 160, 234, 282
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 129, 271
BssMI GATC 5 cut(s) 112, 165, 226, 281, 287
Bst2UI CCWGG 2 cut(s) 91, 273
Bst4CI ACNGT 4 cut(s) 53, 183, 256, 308
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 234, 295
BstF5I GGATG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 5 cut(s) 115, 168, 229, 284, 290
BstMBI GATC 5 cut(s) 112, 165, 226, 281, 287
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 125, 206
BstNI CCWGG 2 cut(s) 91, 273
BstSCI CCNGG 2 cut(s) 89, 271
BstSFI CTRYAG 1 cut(s) 304
BstSLI GKGCMC 2 cut(s) 272, 382
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 193, 226
BstX2I RGATCY 3 cut(s) 165, 226, 287
BstYI RGATCY 3 cut(s) 165, 226, 287
BstZI CGGCCG 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 295
BsuRI GGCC 3 cut(s) 69, 270, 313
BsuTUI ATCGAT 1 cut(s) 369
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 382
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 3 cut(s) 97, 268, 269
ClaI ATCGAT 1 cut(s) 369
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 179
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 2 cut(s) 234, 295
DpnI GATC 5 cut(s) 114, 167, 228, 283, 289
DpnII GATC 5 cut(s) 112, 165, 226, 281, 287
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
EaeI YGGCCR 2 cut(s) 67, 311
EagI CGGCCG 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 332
EclXI CGGCCG 1 cut(s) 67
Eco24I GRGCYC 2 cut(s) 272, 334
Eco47I GGWCC 1 cut(s) 97
Eco52I CGGCCG 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 332
Eco81I CCTNAGG 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 332
EcoO109I RGGNCCY 2 cut(s) 268, 269
EcoRII CCWGG 2 cut(s) 89, 271
EcoT38I GRGCYC 2 cut(s) 272, 334
FaiI YATR 3 cut(s) 221, 345, 390
FauI CCCGC 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 70, 207, 215, 314
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 2 cut(s) 272, 334
Fsp4HI GCNGC 4 cut(s) 70, 207, 215, 314
FspBI CTAG 1 cut(s) 230
GluI GCNGC 4 cut(s) 70, 207, 215, 314
HaeIII GGCC 3 cut(s) 69, 270, 313
HapII CCGG 1 cut(s) 157
HgaI GACGC 1 cut(s) 61
HinfI GANTC 2 cut(s) 41, 366
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 3 cut(s) 79, 157, 285
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 3 cut(s) 68, 77, 105
HpyCH4III ACNGT 4 cut(s) 53, 183, 256, 308
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 5 cut(s) 200, 209, 214, 362, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 206
HpyF3I CTNAG 2 cut(s) 234, 295
HpySE526I ACGT 1 cut(s) 30
Kpn2I TCCGGA 1 cut(s) 156
Kzo9I GATC 5 cut(s) 112, 165, 226, 281, 287
Lsp1109I GCAGC 2 cut(s) 193, 226
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 299
MalI GATC 5 cut(s) 114, 167, 228, 283, 289
MboI GATC 5 cut(s) 112, 165, 226, 281, 287
MboII GAAGA 4 cut(s) 151, 154, 172, 175
MflI RGATCY 3 cut(s) 165, 226, 287
MhlI GDGCHC 3 cut(s) 272, 334, 382
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 35, 124
MnlI CCTC 6 cut(s) 87, 124, 258, 301, 304, 346
MroI TCCGGA 1 cut(s) 156
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 2 cut(s) 91, 273
MvaI CCWGG 2 cut(s) 91, 273
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 125, 206
NdeII GATC 5 cut(s) 112, 165, 226, 281, 287
NlaIV GGNNCC 3 cut(s) 98, 269, 270
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 299
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 72
PfeI GAWTC 1 cut(s) 366
PkrI GCNGC 4 cut(s) 71, 208, 216, 315
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PsiI TTATAA 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 89, 271
PspGI CCWGG 2 cut(s) 89, 271
PspN4I GGNNCC 3 cut(s) 98, 269, 270
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 3 cut(s) 97, 268, 269
PsuI RGATCY 3 cut(s) 165, 226, 287
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SacI GAGCTC 1 cut(s) 334
SatI GCNGC 4 cut(s) 70, 207, 215, 314
Sau3AI GATC 5 cut(s) 112, 165, 226, 281, 287
Sau96I GGNCC 3 cut(s) 97, 268, 269
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 91, 273
SduI GDGCHC 3 cut(s) 272, 334, 382
SetI ASST 8 cut(s) 11, 33, 199, 208, 219, 235, 301, 334
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 304
SinI GGWCC 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SsiI CCGC 3 cut(s) 70, 126, 314
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 89, 271
TaaI ACNGT 4 cut(s) 53, 183, 256, 308
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 369
TatI WGTACW 1 cut(s) 178
TauI GCSGC 2 cut(s) 72, 316
TfiI GAWTC 1 cut(s) 366
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 2 cut(s) 206, 214
Tsp45I GTSAC 1 cut(s) 299
TspRI CASTG 1 cut(s) 382
VneI GTGCAC 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 97
XspI CTAG 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.