Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001573

Physical Location & Seq

Genomic Coordinates Reverse (-)

57628171 .. 57644534

Gene Structure 16364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGAAATGCTTCCTCTGGCATGGGTGTTGCTGAGGACTGCCGCAATACATTCTTGGAACTGCAGAGAAAGAAGGCCTTTCGCTATGTGATTTTTAAGATTGATGAGAAGAAGAAAGAGGTTGTGGTAGAAAAGATTGGAGGCCCAGCTGAAAGTTATGATGATTTCACTGGTTCGTTGCCTGAAAATGATTGCCGATATGCAATCTATGACTTCGATTTTGTCACTTCAGAGAATTGCCAGAAGAGCAAGATCATCTTCATTGCATGCTGCGTTGTTATTTGGACCACACACACCAAGGGAGTATGTGCAGGGCTCGCAAGCCGAATGGCTGCATATGCAGAAAACGACGTAAAGATGGTGCAATATAATTTCAAGAGGATGACTGTTGTTCCCAGCGGGAAGGACTTCATTGATATTATCCTTTCTCGCACCCAGCGGCAGACCCCAACTGTGGTCCACAAGGGTTATGCAATTAACCGCCTGCGTCAGTTCTATATGCGCAAAGTGAAATACACCCAAACAAATTTTCATGAGAAGCTCTATACTATCATTGATGAATTTCCTAGGATGGAAGACATCCATCCTTTCTACGGCGATCTTCTGCATGTTCTCTACAACAAGGACCATTACAAGCTCGCGCTTGGTCAAATAAATACTGCAAGGAACCTTACTTCTAAGATTACTAAAGATTATGTCAAGTTATTGAAGTATGGTGATTCACTTTACCGATGCAAGAGTCTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1 NOGCT

Protein Analysis

249

Amino Acids

28.85

Weight (kDa)

9.15

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	7 - 102	2.8e-21	Cofilin/tropomyosin-type actin-binding protein
NOG1_N	PF17835	125 - 248	1.1e-43	NOG1 N-terminal helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10300 AT1G10300 AT1G10300 AT1G50920
fragaria_vesca	FvH4_3g28930 FvH4_3g28930 FvH4_6g37740
malus_domestica	MD06G1031200.v1.1 MD11G1222700.v1.1 MD16G1277600.v1.1
prunus_persica	Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.4G247400_v2.0.a1 Prupe.5G045700_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.6G149400_v2.0.a1
pyrus_communis	pycom03g13360 pycom06g02600 pycom11g16960 pycom11g19650
rosa_chinensis	RchiOBHm_Chr3g0491451 RchiOBHm_Chr5g0051831 RchiOBHm_Chr5g0051911
rosa_laevigata	RLG00000034859 RLG00000034861
rosa_multiflora	Rmu_co8440613.1_g000002 Rmu_sc0001267.1_g000040
rosa_roxburghii	Rroxscaffold_1G00027370 Rroxscaffold_1G00027400
rosa_rugosa	Rorug03G0248800 Rorug03G0248800 Rorug03G0249700 Rorug05G0276600 Rorug05G0276700 Rorug05G0276800
rosa_samantha	Rh3AG298700 Rh3DG332500 Rh3DG333200 Rh5AG348600 Rh5AG348900 Rh5BG359100 Rh5BG359200 Rh5BG359900 Rh5CG384700 Rh5CG384900 Rh5DG374600
rosa_wichuraiana	Rw3G026370 Rw5G032900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	503
AccII	CGCG	1 cut(s)	641
AciI	CCGC	4 cut(s)	43, 399, 439, 481
AcsI	RAATTY	2 cut(s)	526, 560
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	454, 593
AgsI	TTSAA	2 cut(s)	376, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	3 cut(s)	149, 541, 637
AluI	AGCT	3 cut(s)	149, 541, 637
Alw26I	GTCTC	1 cut(s)	746
AoxI	GGCC	2 cut(s)	75, 142
ApeKI	GCWGC	2 cut(s)	270, 332
ApoI	RAATTY	2 cut(s)	526, 560
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	2 cut(s)	10, 407
AspA2I	CCTAGG	1 cut(s)	566
AspLEI	GCGC	2 cut(s)	504, 643
AspS9I	GGNCC	4 cut(s)	143, 285, 457, 625
AsuHPI	GGTGA	1 cut(s)	728
AvaII	GGWCC	3 cut(s)	285, 457, 625
AvrII	CCTAGG	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	257, 319
BccI	CCATC	3 cut(s)	352, 565, 591
BceAI	ACGGC	1 cut(s)	610
BcoDI	GTCTC	1 cut(s)	746
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	62
BisI	GCNGC	4 cut(s)	43, 271, 333, 440
BlnI	CCTAGG	1 cut(s)	566
BlsI	GCNGC	4 cut(s)	44, 272, 334, 441
Bme18I	GGWCC	3 cut(s)	285, 457, 625
BmgT120I	GGNCC	4 cut(s)	143, 285, 457, 625
BmiI	GGNNCC	1 cut(s)	668
BmsI	GCATC	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	297, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 593
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	297, 566
BseGI	GGATG	4 cut(s)	387, 576, 579, 583
BseLI	CCNNNNNNNGG	2 cut(s)	454, 593
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	257, 319
BseYI	CCCAGC	3 cut(s)	145, 395, 435
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	2 cut(s)	77, 144
BslI	CCNNNNNNNGG	2 cut(s)	454, 593
BsmAI	GTCTC	1 cut(s)	746
BsnI	GGCC	2 cut(s)	77, 144
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	252, 598
BspACI	CCGC	4 cut(s)	43, 399, 439, 481
BspANI	GGCC	2 cut(s)	77, 144
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	641
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	1 cut(s)	668
BspMAI	CTGCAG	1 cut(s)	66
BspQI	GCTCTTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	297, 566
BssMI	GATC	2 cut(s)	252, 598
BssT1I	CCWWGG	2 cut(s)	297, 566
Bst4CI	ACNGT	2 cut(s)	388, 454
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	5 cut(s)	268, 318, 322, 485, 639
BstDEI	CTNAG	2 cut(s)	33, 678
BstF5I	GGATG	4 cut(s)	387, 576, 579, 583
BstFNI	CGCG	1 cut(s)	641
BstHHI	GCGC	2 cut(s)	504, 643
BstKTI	GATC	2 cut(s)	255, 601
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	2 cut(s)	252, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 317, 338
BstNSI	RCATGY	2 cut(s)	270, 611
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	2 cut(s)	257, 319
BstV2I	GAAGAC	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	77, 144
BtsCI	GGATG	4 cut(s)	387, 576, 579, 583
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	5 cut(s)	268, 318, 322, 485, 639
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	2 cut(s)	504, 643
Cfr13I	GGNCC	4 cut(s)	143, 285, 457, 625
CseI	GACGC	1 cut(s)	476
CviAII	CATG	4 cut(s)	22, 267, 533, 608
CviJI	RGCY	8 cut(s)	77, 144, 149, 316, 324, 332, 541, 637
CviKI_1	RGCY	8 cut(s)	77, 144, 149, 316, 324, 332, 541, 637
DdeI	CTNAG	2 cut(s)	33, 678
DpnI	GATC	2 cut(s)	254, 600
DpnII	GATC	2 cut(s)	252, 598
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	297, 566
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	3 cut(s)	285, 457, 625
Eco57I	CTGAAG	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	297, 566
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	2 cut(s)	297, 566
FaeI	CATG	4 cut(s)	25, 270, 536, 611
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 242, 274
FatI	CATG	4 cut(s)	21, 266, 532, 607
FauI	CCCGC	1 cut(s)	392
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	43, 271, 333, 440
FokI	GGATG	4 cut(s)	394, 566, 570, 583
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	4 cut(s)	43, 271, 333, 440
FspBI	CTAG	1 cut(s)	567
FspI	TGCGCA	1 cut(s)	503
GlaI	GCGC	2 cut(s)	503, 642
GluI	GCNGC	4 cut(s)	43, 271, 333, 440
GsaI	CCCAGC	3 cut(s)	149, 399, 439
HaeIII	GGCC	2 cut(s)	77, 144
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	2 cut(s)	504, 643
Hin1II	CATG	4 cut(s)	25, 270, 536, 611
Hin6I	GCGC	2 cut(s)	502, 641
HinP1I	GCGC	2 cut(s)	502, 641
HinfI	GANTC	2 cut(s)	719, 739
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	376, 533
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	67, 397
HpyCH4III	ACNGT	2 cut(s)	388, 454
HpyCH4IV	ACGT	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 317, 338
HpyF3I	CTNAG	2 cut(s)	33, 678
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	4 cut(s)	25, 270, 536, 611
HspAI	GCGC	2 cut(s)	502, 641
Kzo9I	GATC	2 cut(s)	252, 598
LguI	GCTCTTC	1 cut(s)	239
LpnPI	CCDG	9 cut(s)	3, 156, 159, 195, 254, 297, 409, 449, 497
Lsp1109I	GCAGC	2 cut(s)	257, 319
LweI	GCATC	1 cut(s)	722
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	254, 600
MboI	GATC	2 cut(s)	252, 598
MboII	GAAGA	6 cut(s)	121, 124, 250, 256, 587, 593
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	6 cut(s)	235, 370, 474, 526, 560, 745
MlyI	GAGTC	1 cut(s)	748
MnlI	CCTC	5 cut(s)	25, 28, 112, 134, 372
MroXI	GAANNNNTTC	2 cut(s)	10, 407
MseI	TTAA	3 cut(s)	96, 477, 748
MspA1I	CMGCKG	3 cut(s)	149, 399, 439
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	3 cut(s)	246, 317, 338
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	2 cut(s)	252, 598
NlaIII	CATG	4 cut(s)	25, 270, 536, 611
NlaIV	GGNNCC	1 cut(s)	668
NmuCI	GTSAC	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	503
NspI	RCATGY	2 cut(s)	270, 611
PaeI	GCATGC	1 cut(s)	270
PagI	TCATGA	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	239
PdmI	GAANNNNTTC	2 cut(s)	10, 407
PfeI	GAWTC	1 cut(s)	719
PkrI	GCNGC	4 cut(s)	44, 272, 334, 441
PleI	GAGTC	1 cut(s)	747
PpsI	GAGTC	1 cut(s)	747
PspFI	CCCAGC	3 cut(s)	145, 395, 435
PspN4I	GGNNCC	1 cut(s)	668
PspPI	GGNCC	4 cut(s)	143, 285, 457, 625
PstI	CTGCAG	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	96, 477, 748
SatI	GCNGC	4 cut(s)	43, 271, 333, 440
Sau3AI	GATC	2 cut(s)	252, 598
Sau96I	GGNCC	4 cut(s)	143, 285, 457, 625
SchI	GAGTC	1 cut(s)	748
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	123, 151, 354, 543, 639, 672
SfaNI	GCATC	1 cut(s)	722
SfcI	CTRYAG	1 cut(s)	62
SinI	GGWCC	3 cut(s)	285, 457, 625
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	6 cut(s)	235, 370, 474, 526, 560, 745
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	43, 399, 439, 481
SspMI	CTAG	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	77
StyI	CCWWGG	2 cut(s)	297, 566
TaaI	ACNGT	2 cut(s)	388, 454
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	216
TasI	AATT	6 cut(s)	235, 370, 474, 526, 560, 745
TauI	GCSGC	2 cut(s)	45, 442
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	3 cut(s)	96, 477, 748
Tru9I	TTAA	3 cut(s)	96, 477, 748
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	270, 332
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	250, 400, 521, 573
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	3 cut(s)	285, 457, 625
XapI	RAATTY	2 cut(s)	526, 560
XceI	RCATGY	2 cut(s)	270, 611
XmaJI	CCTAGG	1 cut(s)	566
XmnI	GAANNNNTTC	2 cut(s)	10, 407
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.