RchiOBHm_Chr3g0491451

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001573
Physical Location & Seq
Forward (+)
38172435 .. 38174064
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45444

Sequence Viewer

Length: 1038 bp
ATGGTGCAATATAATTTCAAGAAGATGACTGTTGTCCCCAGCGGGAAGGACTTCATTGATGTTATCCTATCTCGCACCCAGCGGCAGACCCCAACTGTAGTCCACAAGGGTTATGCCATTAACCGCCTGCGTCAGTTCTATATGCGCAAAGTGAAATACACCCAGACAGATTTTCATGAGAAGCTCTCTACTATCATTGATGAATTTCCTAGGCTGGAAGACATCCATCCTTTCTATGGTGATCTTCTACATGTTGTCTACAACAAGGACCATTACAAGCTCGCACTGGATCAAATCGATACTGCAAGGAAACTTATTTCCGAGATTGCTATAGATTATGTCAAGTTATTGAAGTATGGCGATTCACTTTACCGATGCAAGAGTCTCAAGGTTGCTGCTCTTGGCCGTATGTGCACAGTTATAAAGAGGATTGGTCCGACTTTGGCTTATCTAGAACAAATTAGGCAACACATGGCAAGGCTACCTTCAATTGACCCAAACACCAGGACAATATTGATATGTGGCTATCCGAATGTTGGAAAGAGTTCATTCATCAACAAGATCACCAGGGCCGATGTGGATGTCCAGCCTTATGCTTTTACTACAAAGTCACTCTTTGTGGGGCATACAGATTATAAGGACCTGAGGTACCAGGTTATTGATACACCTGGGATTTTGGACCGACCATTTGAAGACTGTAACATTATTGAGATGTGCAGCATCACAGCATTGGCACATTTGAGAGCAGCTGTTTTGTTCTTCTTGGACATCTCAGGGTCTTGTGGTTATACCATTGCTCAACAAGCAGCCCTATTTCACAGCATTAAATCTCTGTTCATGAACAAACGATTAATTATAGTCTGCAACAAGACTGATTTGCAGCCATTGGAAGGCATATCTGAGGAAGACATGAAGTTGGTAACAGAGATGAAAGCTGAAGCTGTGAAGACTGTGATTAGTCAAGGAGGCGAGGCTACAAATGATGATGGAATACTCTTGACCATGAGCACTTTGACCGAGGAGGGGTTATTTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

345

Amino Acids

39.25

Weight (kDa)

8.52

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOG1_N PF17835 6 - 165 1.3e-58 NOG1 N-terminal helical domain
FeoB_N PF02421 170 - 322 4.7e-11 Ferrous iron transport protein B
MMR_HSR1 PF01926 171 - 290 2.3e-18 50S ribosome-binding GTPase
NOG1 PF06858 236 - 292 1.2e-24 Nucleolar GTP-binding protein 1 (NOG1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 422, 636
Acc16I TGCGCA 1 cut(s) 146
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 648
AccI GTMKAC 1 cut(s) 258
AciI CCGC 3 cut(s) 42, 82, 124
AclWI GGATC 1 cut(s) 297
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 957
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1023
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 4 cut(s) 19, 352, 489, 692
AjnI CCWGG 4 cut(s) 503, 566, 651, 667
AluBI AGCT 5 cut(s) 184, 280, 749, 935, 941
AluI AGCT 5 cut(s) 184, 280, 749, 935, 941
Alw21I GWGCWC 2 cut(s) 416, 1010
Alw26I GTCTC 1 cut(s) 389
Alw44I GTGCAC 1 cut(s) 412
AlwI GGATC 1 cut(s) 297
AoxI GGCC 2 cut(s) 403, 570
ApaLI GTGCAC 1 cut(s) 412
ApeKI GCWGC 5 cut(s) 395, 717, 746, 806, 880
ApoI RAATTY 1 cut(s) 203
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AseI ATTAAT 1 cut(s) 851
Asp700I GAANNNNTTC 2 cut(s) 50, 544
Asp718I GGTACC 1 cut(s) 648
AspA2I CCTAGG 1 cut(s) 209
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 5 cut(s) 268, 434, 570, 640, 679
AsuHPI GGTGA 2 cut(s) 251, 556
AvaII GGWCC 4 cut(s) 268, 434, 640, 679
AvrII CCTAGG 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 644
BaeGI GKGCMC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 648
BbsI GAAGAC 4 cut(s) 225, 699, 912, 953
Bbv12I GWGCWC 2 cut(s) 416, 1010
BbvI GCAGC 5 cut(s) 382, 729, 758, 818, 892
BccI CCATC 2 cut(s) 234, 980
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 4 cut(s) 505, 568, 653, 669
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 2 cut(s) 210, 452
BfmI CTRYAG 2 cut(s) 96, 330
BisI GCNGC 6 cut(s) 83, 396, 718, 747, 807, 881
BlnI CCTAGG 1 cut(s) 209
BlsI GCNGC 6 cut(s) 84, 397, 719, 748, 808, 882
Bme1390I CCNGG 4 cut(s) 505, 568, 653, 669
Bme18I GGWCC 4 cut(s) 268, 434, 640, 679
BmgT120I GGNCC 5 cut(s) 268, 434, 570, 640, 679
BmiI GGNNCC 1 cut(s) 650
BmrFI CCNGG 4 cut(s) 505, 568, 653, 669
BmsI GCATC 2 cut(s) 365, 729
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 4 cut(s) 225, 699, 912, 953
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpuEI CTTGAG 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 297
BsaJI CCNNGG 4 cut(s) 209, 567, 668, 1017
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1023
Bse1I ACTGG 1 cut(s) 291
Bse21I CCTNAGG 1 cut(s) 644
Bse3DI GCAATG 1 cut(s) 792
BseBI CCWGG 4 cut(s) 505, 568, 653, 669
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 4 cut(s) 209, 567, 668, 1017
BseGI GGATG 3 cut(s) 222, 226, 586
BseLI CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1023
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 3 cut(s) 635, 786, 891
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 1034
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 5 cut(s) 382, 729, 758, 818, 892
BseYI CCCAGC 2 cut(s) 38, 78
BsgI GTGCAG 1 cut(s) 736
BshFI GGCC 2 cut(s) 405, 572
BshNI GGYRCC 1 cut(s) 648
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 2 cut(s) 416, 1010
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1023
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 2 cut(s) 405, 572
Bsp1286I GDGCHC 2 cut(s) 416, 1010
Bsp143I GATC 3 cut(s) 241, 289, 561
BspACI CCGC 3 cut(s) 42, 82, 124
BspANI GGCC 2 cut(s) 405, 572
BspCNI CTCAG 3 cut(s) 636, 785, 892
BspDI ATCGAT 1 cut(s) 297
BspHI TCATGA 2 cut(s) 175, 837
BspLI GGNNCC 1 cut(s) 650
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 792
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 4 cut(s) 209, 567, 668, 1017
BssMI GATC 3 cut(s) 241, 289, 561
BssT1I CCWWGG 1 cut(s) 209
Bst2UI CCWGG 4 cut(s) 505, 568, 653, 669
Bst4CI ACNGT 5 cut(s) 31, 97, 418, 698, 952
BstC8I GCNNGC 2 cut(s) 128, 282
BstDEI CTNAG 3 cut(s) 644, 772, 900
BstF5I GGATG 3 cut(s) 222, 226, 586
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 3 cut(s) 244, 292, 564
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 3 cut(s) 241, 289, 561
BstMWI GCNNNNNNNGC 2 cut(s) 411, 803
BstNI CCWGG 4 cut(s) 505, 568, 653, 669
BstNSI RCATGY 1 cut(s) 254
BstPAI GACNNNNGTC 1 cut(s) 32
BstSCI CCNGG 4 cut(s) 503, 566, 651, 667
BstSFI CTRYAG 2 cut(s) 96, 330
BstSLI GKGCMC 1 cut(s) 416
BstV1I GCAGC 5 cut(s) 382, 729, 758, 818, 892
BstV2I GAAGAC 4 cut(s) 225, 699, 912, 953
Bsu15I ATCGAT 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 644
BsuRI GGCC 2 cut(s) 405, 572
BsuTUI ATCGAT 1 cut(s) 297
BtsCI GGATG 3 cut(s) 222, 226, 586
BtsIMutI CAGTG 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 128, 282
CciI TCATGA 2 cut(s) 175, 837
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 5 cut(s) 268, 434, 570, 640, 679
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 1 cut(s) 119
CsiI ACCWGGT 1 cut(s) 651
Csp6I GTAC 1 cut(s) 649
CviAII CATG 6 cut(s) 176, 251, 472, 838, 910, 1003
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 3 cut(s) 644, 772, 900
DpnI GATC 3 cut(s) 243, 291, 563
DpnII GATC 3 cut(s) 241, 289, 561
EaeI YGGCCR 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 209
Eco47I GGWCC 4 cut(s) 268, 434, 640, 679
Eco57I CTGAAG 1 cut(s) 957
Eco81I CCTNAGG 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 640
EcoRII CCWGG 4 cut(s) 503, 566, 651, 667
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 6 cut(s) 179, 254, 475, 841, 913, 1006
FalI AAGNNNNNCTT 4 cut(s) 469, 501, 599, 631
FaqI GGGAC 1 cut(s) 20
FatI CATG 6 cut(s) 175, 250, 471, 837, 909, 1002
FauI CCCGC 1 cut(s) 35
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 6 cut(s) 83, 396, 718, 747, 807, 881
FokI GGATG 3 cut(s) 209, 213, 593
Fsp4HI GCNGC 6 cut(s) 83, 396, 718, 747, 807, 881
FspBI CTAG 2 cut(s) 210, 452
FspI TGCGCA 1 cut(s) 146
GlaI GCGC 1 cut(s) 146
GluI GCNGC 6 cut(s) 83, 396, 718, 747, 807, 881
GsaI CCCAGC 2 cut(s) 42, 82
HaeIII GGCC 2 cut(s) 405, 572
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 147
Hin1II CATG 6 cut(s) 179, 254, 475, 841, 913, 1006
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 2 cut(s) 362, 382
HphI GGTGA 2 cut(s) 251, 556
Hpy166II GTNNAC 3 cut(s) 103, 259, 414
Hpy188I TCNGA 4 cut(s) 322, 438, 531, 901
Hpy188III TCNNGA 5 cut(s) 19, 176, 452, 838, 997
Hpy8I GTNNAC 3 cut(s) 103, 259, 414
HpyAV CCTTC 3 cut(s) 40, 495, 884
HpyCH4III ACNGT 5 cut(s) 31, 97, 418, 698, 952
HpyCH4V TGCA 7 cut(s) 7, 305, 378, 414, 717, 864, 880
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 803
HpyF3I CTNAG 3 cut(s) 644, 772, 900
Hsp92II CATG 6 cut(s) 179, 254, 475, 841, 913, 1006
HspAI GCGC 1 cut(s) 145
KpnI GGTACC 1 cut(s) 652
Kzo9I GATC 3 cut(s) 241, 289, 561
Lsp1109I GCAGC 5 cut(s) 382, 729, 758, 818, 892
LweI GCATC 2 cut(s) 365, 729
MabI ACCWGGT 1 cut(s) 651
MaeI CTAG 2 cut(s) 210, 452
MaeIII GTNAC 3 cut(s) 609, 698, 919
MalI GATC 3 cut(s) 243, 291, 563
MboI GATC 3 cut(s) 241, 289, 561
MboII GAAGA 7 cut(s) 34, 230, 236, 704, 751, 917, 958
MfeI CAATTG 1 cut(s) 489
MhlI GDGCHC 2 cut(s) 416, 1010
MluCI AATT 5 cut(s) 13, 203, 459, 489, 852
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 2 cut(s) 461, 517
MnlI CCTC 7 cut(s) 420, 639, 895, 959, 964, 1012, 1015
MroXI GAANNNNTTC 2 cut(s) 50, 544
MseI TTAA 3 cut(s) 120, 825, 851
MspA1I CMGCKG 3 cut(s) 42, 82, 749
MspR9I CCNGG 4 cut(s) 505, 568, 653, 669
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 4 cut(s) 505, 568, 653, 669
MwoI GCNNNNNNNGC 2 cut(s) 411, 803
NdeII GATC 3 cut(s) 241, 289, 561
NlaIII CATG 6 cut(s) 179, 254, 475, 841, 913, 1006
NlaIV GGNNCC 1 cut(s) 650
NmuCI GTSAC 1 cut(s) 609
NsbI TGCGCA 1 cut(s) 146
NspI RCATGY 1 cut(s) 254
PagI TCATGA 2 cut(s) 175, 837
PciI ACATGT 1 cut(s) 250
PdmI GAANNNNTTC 2 cut(s) 50, 544
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 6 cut(s) 84, 397, 719, 748, 808, 882
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
PpuMI RGGWCCY 1 cut(s) 640
PscI ACATGT 1 cut(s) 250
PshAI GACNNNNGTC 1 cut(s) 32
PshBI ATTAAT 1 cut(s) 851
PsiI TTATAA 2 cut(s) 422, 636
Psp5II RGGWCCY 1 cut(s) 640
Psp6I CCWGG 4 cut(s) 503, 566, 651, 667
PspFI CCCAGC 2 cut(s) 38, 78
PspGI CCWGG 4 cut(s) 503, 566, 651, 667
PspN4I GGNNCC 1 cut(s) 650
PspPI GGNCC 5 cut(s) 268, 434, 570, 640, 679
PspPPI RGGWCCY 1 cut(s) 640
PvuII CAGCTG 1 cut(s) 749
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
SaqAI TTAA 3 cut(s) 120, 825, 851
SatI GCNGC 6 cut(s) 83, 396, 718, 747, 807, 881
Sau3AI GATC 3 cut(s) 241, 289, 561
Sau96I GGNCC 5 cut(s) 268, 434, 570, 640, 679
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 4 cut(s) 505, 568, 653, 669
SduI GDGCHC 2 cut(s) 416, 1010
SexAI ACCWGGT 1 cut(s) 651
SfaNI GCATC 2 cut(s) 365, 729
SfcI CTRYAG 2 cut(s) 96, 330
SinI GGWCC 4 cut(s) 268, 434, 640, 679
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 5 cut(s) 13, 203, 459, 489, 852
SsiI CCGC 3 cut(s) 42, 82, 124
SspI AATATT 1 cut(s) 513
SspMI CTAG 2 cut(s) 210, 452
StyD4I CCNGG 4 cut(s) 503, 566, 651, 667
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 5 cut(s) 31, 97, 418, 698, 952
TaqI TCGA 1 cut(s) 297
TaqII GACCGA 2 cut(s) 696, 1031
TasI AATT 5 cut(s) 13, 203, 459, 489, 852
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 3 cut(s) 120, 825, 851
Tru9I TTAA 3 cut(s) 120, 825, 851
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 5 cut(s) 395, 717, 746, 806, 880
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 9 cut(s) 43, 164, 216, 537, 541, 826, 854, 926, 944
TspGWI ACGGA 1 cut(s) 1023
TspRI CASTG 1 cut(s) 291
VneI GTGCAC 1 cut(s) 412
VpaK11BI GGWCC 4 cut(s) 268, 434, 640, 679
VspI ATTAAT 1 cut(s) 851
XapI RAATTY 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 451
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 2 cut(s) 233, 574
XmaJI CCTAGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 258
XmnI GAANNNNTTC 2 cut(s) 50, 544
XspI CTAG 2 cut(s) 210, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.