Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8440613.1

Orthogroup ID

OG0001573

Physical Location & Seq

Genomic Coordinates Forward (+)

1116 .. 1585

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8440613.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 470 bp

atgactgttgttcccagcgggaaggacttcatcgatattatcctttctcgcacccagcggcagaccccaactgtggtccacaagggttatgcaattaaccgcctgcggcagttctatatgcgcaaagtcaaatacacccaaacaaattttcatgagaagctctctactatcattgatgaatttcctaggctggacgacatccaccctttctatggcgatcttctgcatgttctctacaacaaggaccattataagctcgcactgggtcagatcaatactgcaaggaatcttatttccaagattgctaaggattatgtcaagttattgaagtatggtgattcactttaccgatgcaagagtctcaaggttgctgctcttggccgtatgtgcacggtcataaagaggattggccctagtttagcttatctagaacaaattaggcaacacatggcaaggctgccttcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1 NOGCT

Protein Analysis

156

Amino Acids

18.17

Weight (kDa)

9.94

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10300 AT1G10300 AT1G10300 AT1G50920
fragaria_vesca	FvH4_3g28930 FvH4_3g28930 FvH4_6g37740
malus_domestica	MD06G1031200.v1.1 MD11G1222700.v1.1 MD16G1277600.v1.1
prunus_persica	Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.4G247400_v2.0.a1 Prupe.5G045700_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.6G149400_v2.0.a1
pyrus_communis	pycom03g13360 pycom06g02600 pycom11g16960 pycom11g19650
rosa_chinensis	RchiOBHm_Chr3g0491451 RchiOBHm_Chr5g0051831 RchiOBHm_Chr5g0051911
rosa_laevigata	RLG00000034859 RLG00000034861
rosa_multiflora	Rmu_co8440613.1_g000002 Rmu_sc0001267.1_g000040
rosa_roxburghii	Rroxscaffold_1G00027370 Rroxscaffold_1G00027400
rosa_rugosa	Rorug03G0248800 Rorug03G0248800 Rorug03G0249700 Rorug05G0276600 Rorug05G0276700 Rorug05G0276800
rosa_samantha	Rh3AG298700 Rh3DG332500 Rh3DG333200 Rh5AG348600 Rh5AG348900 Rh5BG359100 Rh5BG359200 Rh5BG359900 Rh5CG384700 Rh5CG384900 Rh5DG374600
rosa_wichuraiana	Rw3G026370 Rw5G032900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
Acc16I	TGCGCA	1 cut(s)	122
AciI	CCGC	4 cut(s)	18, 58, 100, 106
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	145, 179
AfiI	CCNNNNNNNGG	2 cut(s)	73, 212
AgsI	TTSAA	2 cut(s)	328, 465
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	3 cut(s)	160, 256, 422
AluI	AGCT	3 cut(s)	160, 256, 422
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	379, 409
ApaLI	GTGCAC	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	371, 457
ApoI	RAATTY	2 cut(s)	145, 179
Asp700I	GAANNNNTTC	1 cut(s)	26
AspA2I	CCTAGG	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	3 cut(s)	76, 244, 410
AsuHPI	GGTGA	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	76, 244
AvrII	CCTAGG	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	358, 444
BceAI	ACGGC	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	3 cut(s)	186, 414, 428
BisI	GCNGC	4 cut(s)	59, 107, 372, 458
BlnI	CCTAGG	1 cut(s)	185
BlsI	GCNGC	4 cut(s)	60, 108, 373, 459
Bme18I	GGWCC	2 cut(s)	76, 244
BmgT120I	GGNCC	3 cut(s)	76, 244, 410
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 212
Bse1I	ACTGG	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	73, 212
BseNI	ACTGG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	358, 444
BseYI	CCCAGC	2 cut(s)	14, 54
BshFI	GGCC	2 cut(s)	381, 411
BshVI	ATCGAT	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	73, 212
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	381, 411
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	217, 270
BspACI	CCGC	4 cut(s)	18, 58, 100, 106
BspANI	GGCC	2 cut(s)	381, 411
BspDI	ATCGAT	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	217, 270
BssT1I	CCWWGG	1 cut(s)	185
Bst4CI	ACNGT	3 cut(s)	7, 73, 394
BstC8I	GCNNGC	2 cut(s)	104, 258
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	220, 273
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	2 cut(s)	217, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	358, 444
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	381, 411
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	104, 258
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	3 cut(s)	76, 244, 410
ClaI	ATCGAT	1 cut(s)	33
CviAII	CATG	3 cut(s)	152, 227, 448
CviJI	RGCY	7 cut(s)	160, 190, 256, 381, 411, 422, 457
CviKI_1	RGCY	7 cut(s)	160, 190, 256, 381, 411, 422, 457
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	219, 272
DpnII	GATC	2 cut(s)	217, 270
EaeI	YGGCCR	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	76, 244
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	3 cut(s)	155, 230, 451
FalI	AAGNNNNNCTT	1 cut(s)	445
FatI	CATG	3 cut(s)	151, 226, 447
FauI	CCCGC	1 cut(s)	11
Fnu4HI	GCNGC	4 cut(s)	59, 107, 372, 458
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	4 cut(s)	59, 107, 372, 458
FspBI	CTAG	3 cut(s)	186, 414, 428
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	59, 107, 372, 458
GsaI	CCCAGC	2 cut(s)	18, 58
HaeIII	GGCC	2 cut(s)	381, 411
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	155, 230, 451
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	286, 338, 358
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	79, 390
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	2 cut(s)	152, 428
Hpy8I	GTNNAC	2 cut(s)	79, 390
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	3 cut(s)	7, 73, 394
HpyCH4V	TGCA	5 cut(s)	92, 226, 281, 354, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	155, 230, 451
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	217, 270
LpnPI	CCDG	5 cut(s)	28, 68, 116, 176, 248
Lsp1109I	GCAGC	2 cut(s)	358, 444
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	3 cut(s)	186, 414, 428
MalI	GATC	2 cut(s)	219, 272
MboI	GATC	2 cut(s)	217, 270
MboII	GAAGA	1 cut(s)	212
MfeI	CAATTG	1 cut(s)	465
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	5 cut(s)	93, 145, 179, 435, 465
MlyI	GAGTC	1 cut(s)	367
MnlI	CCTC	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	96
MspA1I	CMGCKG	2 cut(s)	18, 58
MunI	CAATTG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeII	GATC	2 cut(s)	217, 270
NlaIII	CATG	3 cut(s)	155, 230, 451
NsbI	TGCGCA	1 cut(s)	122
NspI	RCATGY	1 cut(s)	230
PagI	TCATGA	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	286, 338
PkrI	GCNGC	4 cut(s)	60, 108, 373, 459
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PsiI	TTATAA	1 cut(s)	252
PspFI	CCCAGC	2 cut(s)	14, 54
PspPI	GGNCC	3 cut(s)	76, 244, 410
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	4 cut(s)	59, 107, 372, 458
Sau3AI	GATC	2 cut(s)	217, 270
Sau96I	GGNCC	3 cut(s)	76, 244, 410
SchI	GAGTC	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	4 cut(s)	162, 258, 369, 424
SfaNI	GCATC	1 cut(s)	341
SinI	GGWCC	2 cut(s)	76, 244
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	5 cut(s)	93, 145, 179, 435, 465
SsiI	CCGC	4 cut(s)	18, 58, 100, 106
SspMI	CTAG	3 cut(s)	186, 414, 428
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	3 cut(s)	7, 73, 394
TaqI	TCGA	1 cut(s)	33
TasI	AATT	5 cut(s)	93, 145, 179, 435, 465
TauI	GCSGC	2 cut(s)	61, 109
TfiI	GAWTC	2 cut(s)	286, 338
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	2 cut(s)	371, 457
TspDTI	ATGAA	3 cut(s)	19, 140, 192
TspRI	CASTG	1 cut(s)	267
VneI	GTGCAC	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	76, 244
XapI	RAATTY	2 cut(s)	145, 179
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmaJI	CCTAGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	3 cut(s)	186, 414, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.