Rh5BG359100

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001573
Physical Location & Seq
Reverse (-)
56068212 .. 56068520
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG359100.1

Sequence Viewer

Length: 309 bp
ATGAAAGCTGAAGCTATGAAGACTCTGATTGGTCAAGGAGGTGAGGCTACGAATGATGATGGGGTACTCTTGACCATGAGCACTTTGACCGAGGAGGGGGTTATCTCTGTAAAGAATGCAGCTTGTGAGAGGTTGTTGAATCAGAGAGTTGAGTTGAAGATGAAATCTAAAAAGATAAATGATTGTTTAAATCGTTTTCATGTTGCGATGTCAAAGCCACGTGACCAAAAGGAAAGGCCTCCATGTATACCTCAGGCTGTTTTAGAAGCTGAGGTTAAGCAAGCAGCAGAGAAGGAAGAGAACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

102

Amino Acids

11.36

Weight (kDa)

6.59

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 30
AcvI CACGTG 1 cut(s) 221
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 2 cut(s) 139, 157
AluBI AGCT 4 cut(s) 8, 14, 122, 269
AluI AGCT 4 cut(s) 8, 14, 122, 269
Alw21I GWGCWC 1 cut(s) 83
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 119, 284
AsuHPI GGTGA 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 252
BbrPI CACGTG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 131, 296
BccI CCATC 1 cut(s) 53
BisI GCNGC 2 cut(s) 120, 285
BlsI GCNGC 2 cut(s) 121, 286
BpiI GAAGAC 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse21I CCTNAGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 261, 266
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 2 cut(s) 131, 296
BshFI GGCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 96
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 83
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 2 cut(s) 262, 265
BssECI CCNNGG 1 cut(s) 90
BssNAI GTATAC 1 cut(s) 248
Bst1107I GTATAC 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 252, 270
BstV1I GCAGC 2 cut(s) 131, 296
BstV2I GAAGAC 1 cut(s) 26
BstZ17I GTATAC 1 cut(s) 248
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 1 cut(s) 238
BtgZI GCGATG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 65
CviAII CATG 3 cut(s) 76, 200, 243
CviJI RGCY 8 cut(s) 8, 14, 47, 122, 217, 238, 257, 269
CviKI_1 RGCY 8 cut(s) 8, 14, 47, 122, 217, 238, 257, 269
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 2 cut(s) 252, 270
DraI TTTAAA 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco147I AGGCCT 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 30
Eco72I CACGTG 1 cut(s) 221
Eco81I CCTNAGG 1 cut(s) 252
FaeI CATG 3 cut(s) 79, 203, 246
FaiI YATR 5 cut(s) 17, 77, 201, 244, 248
FatI CATG 3 cut(s) 75, 199, 242
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 120, 285
Fsp4HI GCNGC 2 cut(s) 120, 285
GluI GCNGC 2 cut(s) 120, 285
HaeIII GGCC 1 cut(s) 238
Hin1II CATG 3 cut(s) 79, 203, 246
HinfI GANTC 2 cut(s) 22, 139
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 27, 144
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 119
HpyF3I CTNAG 2 cut(s) 252, 270
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 3 cut(s) 79, 203, 246
LpnPI CCDG 1 cut(s) 239
Lsp1109I GCAGC 2 cut(s) 131, 296
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 221
MboII GAAGA 3 cut(s) 31, 169, 308
MhlI GDGCHC 1 cut(s) 83
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 8 cut(s) 32, 37, 85, 88, 123, 249, 261, 265
MseI TTAA 2 cut(s) 188, 276
Mva1269I GAATGC 1 cut(s) 121
NlaIII CATG 3 cut(s) 79, 203, 246
NmuCI GTSAC 1 cut(s) 221
PceI AGGCCT 1 cut(s) 238
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 121, 286
PleI GAGTC 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 221
PspCI CACGTG 1 cut(s) 221
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 188, 276
SatI GCNGC 2 cut(s) 120, 285
SchI GAGTC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 83
SetI ASST 9 cut(s) 10, 16, 43, 124, 134, 223, 253, 271, 276
SseBI AGGCCT 1 cut(s) 238
StuI AGGCCT 1 cut(s) 238
TaiI ACGT 1 cut(s) 223
TaqII GACCGA 1 cut(s) 104
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 188, 276
Tru9I TTAA 2 cut(s) 188, 276
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 2 cut(s) 119, 284
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 4 cut(s) 17, 32, 176, 188
XmiI GTMKAC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.