Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001573

Physical Location & Seq

Genomic Coordinates Reverse (-)

56068793 .. 56079924

Gene Structure 11132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG359200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCTCCTTTCCTTGGTCCACTTCATGTTCTCACAATTGTGTGGGGAAGCCTCCTGCATATAGATAATGTGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGAAATGGTCCGAGATCATTGGGCAAGCACACCAAAGTGTCGAAGTTCTTAAAGATCAGGAAGTGATTCGAACCGTTCTTAATATATTACAGACAAATACAAGGGTTGCCAGCTCTCTTGGAACATTTCTCTTAACCCAGATTTCATTGATCTTTTTCGACATGCTTAATGTCTACAGGCTGGAAGACATCCACCCTTTCTACGGCGATCTTCTGCATGTTCTCTACAACAAGGACCATTACAAGCTTGCGCTTGGTCAAATAAATACTGCAAGGAACCTTACTTCTAAGATTACTAAAGATTATGTCAAGTTATTGAAGTATGGTGATTCACTTTACCGATGCAAGAGTCTCAAGGTTGCTGCTCTTGGCCGTATGTGCACGGTTGTAAAGAGGATTGGCCCTAGTTTAGCTTATCTAGAACAAATTAGGCAACACATGGCCAGGCGGCCTTCAATTGACCCAAACACCAGGACAATATTGATTTGCGGCTATCCCAATGTCGGAAAGAGTTCATTCATCAACAAGATCACCAGAGCCGATGTTGATGTCCAGCCTTATGCTTTTACTACAAAGTCACTCTTTGTGGGGCATACAGATTATAAGTTCTTGAGGTACCTACCAGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1 NOGCT

Protein Analysis

249

Amino Acids

28.16

Weight (kDa)

9.73

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NOG1_N	PF17835	99 - 193	9.5e-32	NOG1 N-terminal helical domain
MMR_HSR1	PF01926	199 - 239	4.9e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10300 AT1G10300 AT1G10300 AT1G50920
fragaria_vesca	FvH4_3g28930 FvH4_3g28930 FvH4_6g37740
malus_domestica	MD06G1031200.v1.1 MD11G1222700.v1.1 MD16G1277600.v1.1
prunus_persica	Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.1G572400_v2.0.a1 Prupe.4G247400_v2.0.a1 Prupe.5G045700_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.5G046000_v2.0.a1 Prupe.6G149400_v2.0.a1
pyrus_communis	pycom03g13360 pycom06g02600 pycom11g16960 pycom11g19650
rosa_chinensis	RchiOBHm_Chr3g0491451 RchiOBHm_Chr5g0051831 RchiOBHm_Chr5g0051911
rosa_laevigata	RLG00000034859 RLG00000034861
rosa_multiflora	Rmu_co8440613.1_g000002 Rmu_sc0001267.1_g000040
rosa_roxburghii	Rroxscaffold_1G00027370 Rroxscaffold_1G00027400
rosa_rugosa	Rorug03G0248800 Rorug03G0248800 Rorug03G0249700 Rorug05G0276600 Rorug05G0276700 Rorug05G0276800
rosa_samantha	Rh3AG298700 Rh3DG332500 Rh3DG333200 Rh5AG348600 Rh5AG348900 Rh5BG359100 Rh5BG359200 Rh5BG359900 Rh5CG384700 Rh5CG384900 Rh5DG374600
rosa_wichuraiana	Rw3G026370 Rw5G032900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	720
Acc65I	GGTACC	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	732
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	2 cut(s)	565, 606
AcoI	YGGCCR	2 cut(s)	487, 558
AfaI	GTAC	1 cut(s)	734
AfiI	CCNNNNNNNGG	4 cut(s)	14, 123, 320, 620
AgsI	TTSAA	2 cut(s)	436, 573
AjnI	CCWGG	3 cut(s)	560, 587, 739
AleI	CACNNNNGTG	2 cut(s)	38, 153
AluBI	AGCT	4 cut(s)	89, 231, 364, 530
AluI	AGCT	4 cut(s)	89, 231, 364, 530
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	2 cut(s)	9, 473
Alw44I	GTGCAC	1 cut(s)	496
AoxI	GGCC	4 cut(s)	487, 517, 558, 566
ApaLI	GTGCAC	1 cut(s)	496
ApeKI	GCWGC	4 cut(s)	80, 83, 86, 479
Asp700I	GAANNNNTTC	2 cut(s)	183, 628
Asp718I	GGTACC	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	4 cut(s)	17, 126, 352, 518
AsuHPI	GGTGA	2 cut(s)	455, 640
AsuII	TTCGAA	1 cut(s)	187
AvaII	GGWCC	3 cut(s)	17, 126, 352
BaeGI	GKGCMC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	4 cut(s)	67, 95, 98, 466
BceAI	ACGGC	2 cut(s)	337, 474
BciT130I	CCWGG	3 cut(s)	562, 589, 741
BcoDI	GTCTC	2 cut(s)	9, 473
BfaI	CTAG	2 cut(s)	522, 536
BfmI	CTRYAG	2 cut(s)	81, 292
BisI	GCNGC	6 cut(s)	81, 84, 87, 480, 566, 607
BlsI	GCNGC	6 cut(s)	82, 85, 88, 481, 567, 608
Bme1390I	CCNGG	3 cut(s)	562, 589, 741
Bme18I	GGWCC	3 cut(s)	17, 126, 352
BmgT120I	GGNCC	4 cut(s)	17, 126, 352, 518
BmiI	GGNNCC	2 cut(s)	395, 734
BmrFI	CCNGG	3 cut(s)	562, 589, 741
BmsI	GCATC	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	187
BpuEI	CTTGAG	2 cut(s)	455, 748
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 123, 320, 620
BseBI	CCWGG	3 cut(s)	562, 589, 741
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	4 cut(s)	14, 123, 320, 620
BseSI	GKGCMC	1 cut(s)	500
BseXI	GCAGC	4 cut(s)	67, 95, 98, 466
BshFI	GGCC	4 cut(s)	489, 519, 560, 568
BshNI	GGYRCC	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	500
BslI	CCNNNNNNNGG	4 cut(s)	14, 123, 320, 620
BsmAI	GTCTC	2 cut(s)	9, 473
BsnI	GGCC	4 cut(s)	489, 519, 560, 568
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	5 cut(s)	132, 172, 267, 325, 645
BspACI	CCGC	2 cut(s)	565, 606
BspANI	GGCC	4 cut(s)	489, 519, 560, 568
BspLI	GGNNCC	2 cut(s)	395, 734
BspMAI	CTGCAG	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	732
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	5 cut(s)	132, 172, 267, 325, 645
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	3 cut(s)	562, 589, 741
Bst4CI	ACNGT	2 cut(s)	193, 502
BstBI	TTCGAA	1 cut(s)	187
BstC8I	GCNNGC	3 cut(s)	144, 229, 366
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	5 cut(s)	135, 175, 270, 328, 648
BstMAI	GTCTC	2 cut(s)	9, 473
BstMBI	GATC	5 cut(s)	132, 172, 267, 325, 645
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 95, 104, 113, 495
BstNI	CCWGG	3 cut(s)	562, 589, 741
BstNSI	RCATGY	2 cut(s)	283, 338
BstSCI	CCNGG	3 cut(s)	560, 587, 739
BstSFI	CTRYAG	2 cut(s)	81, 292
BstSLI	GKGCMC	1 cut(s)	500
BstV1I	GCAGC	4 cut(s)	67, 95, 98, 466
BstV2I	GAAGAC	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	489, 519, 560, 568
BtsCI	GGATG	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	144, 229, 366
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	4 cut(s)	17, 126, 352, 518
CsiI	ACCWGGT	1 cut(s)	739
Csp6I	GTAC	1 cut(s)	733
CviAII	CATG	5 cut(s)	26, 94, 280, 335, 556
CviQI	GTAC	1 cut(s)	733
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	5 cut(s)	134, 174, 269, 327, 647
DpnII	GATC	5 cut(s)	132, 172, 267, 325, 645
EaeI	YGGCCR	2 cut(s)	487, 558
Eco130I	CCWWGG	1 cut(s)	13
Eco47I	GGWCC	3 cut(s)	17, 126, 352
EcoRII	CCWGG	3 cut(s)	560, 587, 739
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	5 cut(s)	29, 97, 283, 338, 559
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FatI	CATG	5 cut(s)	25, 93, 279, 334, 555
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	6 cut(s)	81, 84, 87, 480, 566, 607
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	6 cut(s)	81, 84, 87, 480, 566, 607
FspBI	CTAG	2 cut(s)	522, 536
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	6 cut(s)	81, 84, 87, 480, 566, 607
HaeIII	GGCC	4 cut(s)	489, 519, 560, 568
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	5 cut(s)	29, 97, 283, 338, 559
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	3 cut(s)	184, 446, 466
HphI	GGTGA	2 cut(s)	455, 640
Hpy166II	GTNNAC	3 cut(s)	20, 292, 498
Hpy188I	TCNGA	2 cut(s)	130, 623
Hpy188III	TCNNGA	3 cut(s)	176, 536, 727
Hpy8I	GTNNAC	3 cut(s)	20, 292, 498
HpyAV	CCTTC	1 cut(s)	579
HpyCH4III	ACNGT	2 cut(s)	193, 502
HpyCH4V	TGCA	6 cut(s)	58, 83, 334, 389, 462, 498
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 95, 104, 113, 495
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	5 cut(s)	29, 97, 283, 338, 559
HspAI	GCGC	1 cut(s)	368
KpnI	GGTACC	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	132, 172, 267, 325, 645
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	4 cut(s)	67, 95, 98, 466
LweI	GCATC	1 cut(s)	449
MabI	ACCWGGT	1 cut(s)	739
MaeI	CTAG	2 cut(s)	522, 536
MaeIII	GTNAC	1 cut(s)	693
MalI	GATC	5 cut(s)	134, 174, 269, 327, 647
MboI	GATC	5 cut(s)	132, 172, 267, 325, 645
MboII	GAAGA	2 cut(s)	314, 320
MfeI	CAATTG	2 cut(s)	36, 573
MhlI	GDGCHC	1 cut(s)	500
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	3 cut(s)	36, 543, 573
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	3 cut(s)	62, 504, 723
Mox20I	TGGCCA	1 cut(s)	560
MroXI	GAANNNNTTC	2 cut(s)	183, 628
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	4 cut(s)	168, 198, 251, 285
MslI	CAYNNNNRTG	2 cut(s)	38, 153
Msp20I	TGGCCA	1 cut(s)	560
MspR9I	CCNGG	3 cut(s)	562, 589, 741
MunI	CAATTG	2 cut(s)	36, 573
MvaI	CCWGG	3 cut(s)	562, 589, 741
MwoI	GCNNNNNNNGC	5 cut(s)	86, 95, 104, 113, 495
NdeII	GATC	5 cut(s)	132, 172, 267, 325, 645
NlaIII	CATG	5 cut(s)	29, 97, 283, 338, 559
NlaIV	GGNNCC	2 cut(s)	395, 734
NmuCI	GTSAC	1 cut(s)	693
NspI	RCATGY	2 cut(s)	283, 338
NspV	TTCGAA	1 cut(s)	187
OliI	CACNNNNGTG	2 cut(s)	38, 153
PdmI	GAANNNNTTC	2 cut(s)	183, 628
PfeI	GAWTC	2 cut(s)	184, 446
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	6 cut(s)	82, 85, 88, 481, 567, 608
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PsiI	TTATAA	1 cut(s)	720
Psp6I	CCWGG	3 cut(s)	560, 587, 739
PspGI	CCWGG	3 cut(s)	560, 587, 739
PspN4I	GGNNCC	2 cut(s)	395, 734
PspPI	GGNCC	4 cut(s)	17, 126, 352, 518
PstI	CTGCAG	1 cut(s)	85
RsaI	GTAC	1 cut(s)	734
RsaNI	GTAC	1 cut(s)	733
RseI	CAYNNNNRTG	2 cut(s)	38, 153
SaqAI	TTAA	4 cut(s)	168, 198, 251, 285
SatI	GCNGC	6 cut(s)	81, 84, 87, 480, 566, 607
Sau3AI	GATC	5 cut(s)	132, 172, 267, 325, 645
Sau96I	GGNCC	4 cut(s)	17, 126, 352, 518
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	562, 589, 741
SduI	GDGCHC	1 cut(s)	500
SetI	ASST	9 cut(s)	91, 233, 366, 399, 477, 532, 734, 738, 745
SexAI	ACCWGGT	1 cut(s)	739
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	2 cut(s)	81, 292
SfuI	TTCGAA	1 cut(s)	187
SinI	GGWCC	3 cut(s)	17, 126, 352
SmiMI	CAYNNNNRTG	2 cut(s)	38, 153
SmlI	CTYRAG	2 cut(s)	470, 727
SmoI	CTYRAG	2 cut(s)	470, 727
Sse9I	AATT	3 cut(s)	36, 543, 573
SsiI	CCGC	2 cut(s)	565, 606
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	2 cut(s)	522, 536
StyD4I	CCNGG	3 cut(s)	560, 587, 739
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	193, 502
TaqI	TCGA	3 cut(s)	159, 187, 276
TasI	AATT	3 cut(s)	36, 543, 573
TauI	GCSGC	2 cut(s)	568, 609
TfiI	GAWTC	2 cut(s)	184, 446
Tru1I	TTAA	4 cut(s)	168, 198, 251, 285
Tru9I	TTAA	4 cut(s)	168, 198, 251, 285
TseFI	GTSAC	1 cut(s)	693
TseI	GCWGC	4 cut(s)	80, 83, 86, 479
Tsp45I	GTSAC	1 cut(s)	693
TspDTI	ATGAA	4 cut(s)	14, 252, 621, 625
Van91I	CCANNNNNTGG	1 cut(s)	123
VneI	GTGCAC	1 cut(s)	496
VpaK11BI	GGWCC	3 cut(s)	17, 126, 352
XbaI	TCTAGA	1 cut(s)	535
XceI	RCATGY	2 cut(s)	283, 338
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	2 cut(s)	183, 628
XspI	CTAG	2 cut(s)	522, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.