Rh5CG384700

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001573
Physical Location & Seq
Reverse (-)
50638508 .. 50639955
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG384700.1

Sequence Viewer

Length: 1290 bp
ATGGTGCAATATAATTTCAAGAAGATGACTGTTGTTCCCGGTGGGAAGGATTTCATTGATATTATCCTTTCTCGCACCCAGCGGCAGACCCCAACTGTAGTCCACAAGGGTTCTGCCATTGACCGCGTGCGTAAGTTCTATACGCGCAAAGTCAAACATACCCAAACAAATTTTCATGAGAAGCTCTCTACTATCATTGATGAATTTCCTAGGCTGGATGACATCCACCCTTTCTACGGCGATCTTCTGCATGTTCTCTACAACAAGGACCACTACAAGCTCGCACTCGGTCAAATAAATACTGCAAGGAACCTTACTTCTAAGATTGCTAAAGATTATGTCAAGTTATTGAAGTATAGTGATTCACTTTACCGATGCAAAAGTCTCAAGGTTGCTGCTCTTGGTCGTATGTGCACGGTTGTAAAGAGGATTGGCCCTAGTTTAGCTTATCTGGAACAAATTAGACAACACATGGCAAGGCTGCCTTCAATTGATCCAAACACCCGGACAATATTGATTTGCGGCTATCCCAATGTCGGAAAGAGTTCATTCATCAACAAGATCACCAGAGCCGATGTTGATGTCCAGCCTTATGCTTTTACTACAAAGTCACTCTTTGTGGGGCATACAGATTATAAGTTCTTGAGGTACCAGGTTATTGATACACCTGGGATTTTGGACCGACCATTTCAAGACCGTAACATTATTGAGATGTGCAGCATCACAGCATTGGCACATTTGAGAGCTGCTGTTTTGTTCTTCTTGGACATCTCAGGGTCTTGTGGTTATACCATTGCCCAACAAGCTGCCCTTTTTCACAGCATTAAGTCTCTGTTCATGAACAAACCATTGATTATAGTCTGCAACAAGACTGATTTGCAGCCATTGGAGGGCATATCTGAGGAAGACATGAAGTTGGTCACAGAGATGAAAGCTGAAGCTATGAAGACTGTGATTGGTCAAGGAGGTGAGGCTACGAATGATGATGGGGTACTCTTGACCATGAGCACTTTGACCGAGGAGGGGGTTATCTCTGTAAAGAATGCAGCTTGTGAGAGGTTGTTGAATCAGAGAGTTGAGTTGAAGATGAAATCTAAAAAGATAAATGATTGTTTAAATCGTTTTCATGTTGCGATGCCAAAGCCACGTGACCAAAAGGAAAGGCCTCCATGTATACCTCAGGCTGTTTTAGAAGCCAAGCTAAGCAAGCAGCAGAGAAGGAAAAGAGAACTACTGAAAAGGATTTGGAGAATGAAAATGGTGGTGCGGGTGTATACTCAGCCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

429

Amino Acids

49.05

Weight (kDa)

9.71

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOG1_N PF17835 6 - 165 2.3e-59 NOG1 N-terminal helical domain
FeoB_N PF02421 170 - 319 8.8e-10 Ferrous iron transport protein B
MMR_HSR1 PF01926 171 - 290 3e-18 50S ribosome-binding GTPase
NOG1 PF06858 236 - 292 3.6e-25 Nucleolar GTP-binding protein 1 (NOG1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 648
AccI GTMKAC 2 cut(s) 1174, 1274
AccII CGCG 2 cut(s) 126, 145
AciI CCGC 4 cut(s) 82, 124, 522, 1267
AclWI GGATC 1 cut(s) 488
AcsI RAATTY 2 cut(s) 169, 203
AcuI CTGAAG 1 cut(s) 957
AcvI CACGTG 1 cut(s) 1148
AfaI GTAC 2 cut(s) 650, 993
AfiI CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1023
AgsI TTSAA 6 cut(s) 19, 352, 489, 692, 1066, 1084
AjnI CCWGG 2 cut(s) 651, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 9 cut(s) 184, 280, 446, 746, 806, 935, 941, 1049, 1201
AluI AGCT 9 cut(s) 184, 280, 446, 746, 806, 935, 941, 1049, 1201
Alw21I GWGCWC 2 cut(s) 416, 1010
Alw26I GTCTC 2 cut(s) 389, 834
Alw44I GTGCAC 1 cut(s) 412
AlwI GGATC 1 cut(s) 488
AoxI GGCC 2 cut(s) 433, 1163
ApaLI GTGCAC 1 cut(s) 412
ApeKI GCWGC 8 cut(s) 395, 481, 717, 746, 806, 880, 1046, 1210
ApoI RAATTY 2 cut(s) 169, 203
Asp700I GAANNNNTTC 2 cut(s) 50, 544
Asp718I GGTACC 1 cut(s) 648
AspA2I CCTAGG 1 cut(s) 209
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 3 cut(s) 268, 434, 679
AsuC2I CCSGG 2 cut(s) 39, 505
AsuHPI GGTGA 2 cut(s) 556, 980
AvaII GGWCC 2 cut(s) 268, 679
AvrII CCTAGG 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 1179
BaeGI GKGCMC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 648
BbrPI CACGTG 1 cut(s) 1148
BbsI GAAGAC 2 cut(s) 912, 953
Bbv12I GWGCWC 2 cut(s) 416, 1010
BbvI GCAGC 8 cut(s) 382, 468, 729, 733, 793, 892, 1058, 1222
BccI CCATC 1 cut(s) 980
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 2 cut(s) 653, 669
BcnI CCSGG 2 cut(s) 39, 505
BcoDI GTCTC 2 cut(s) 389, 834
BfaI CTAG 2 cut(s) 210, 438
BfmI CTRYAG 1 cut(s) 96
BlnI CCTAGG 1 cut(s) 209
BlpI GCTNAGC 1 cut(s) 1202
Bme1390I CCNGG 4 cut(s) 39, 505, 653, 669
Bme18I GGWCC 2 cut(s) 268, 679
BmgT120I GGNCC 3 cut(s) 268, 434, 679
BmiI GGNNCC 2 cut(s) 311, 650
BmrFI CCNGG 4 cut(s) 39, 505, 653, 669
BmsI GCATC 3 cut(s) 365, 729, 1125
BpiI GAAGAC 2 cut(s) 912, 953
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu1102I GCTNAGC 1 cut(s) 1202
BpuEI CTTGAG 2 cut(s) 371, 664
BpuMI CCSGG 2 cut(s) 39, 505
BsaAI YACGTR 1 cut(s) 1148
BsaJI CCNNGG 3 cut(s) 209, 668, 1017
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1023
Bse1I ACTGG 1 cut(s) 1283
Bse21I CCTNAGG 1 cut(s) 1179
Bse3DI GCAATG 1 cut(s) 792
BseBI CCWGG 2 cut(s) 653, 669
BseDI CCNNGG 3 cut(s) 209, 668, 1017
BseGI GGATG 2 cut(s) 222, 223
BseLI CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1023
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 3 cut(s) 786, 891, 1193
BseNI ACTGG 1 cut(s) 1283
BseRI GAGGAG 1 cut(s) 1034
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 8 cut(s) 382, 468, 729, 733, 793, 892, 1058, 1222
BseYI CCCAGC 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 736
Bsh1236I CGCG 2 cut(s) 126, 145
BshFI GGCC 2 cut(s) 435, 1165
BshNI GGYRCC 1 cut(s) 648
BsiHKAI GWGCWC 2 cut(s) 416, 1010
BsiSI CCGG 2 cut(s) 39, 505
BslI CCNNNNNNNGG 4 cut(s) 236, 536, 890, 1023
BsmAI GTCTC 2 cut(s) 389, 834
BsmI GAATGC 1 cut(s) 1048
BsnI GGCC 2 cut(s) 435, 1165
Bsp1286I GDGCHC 2 cut(s) 416, 1010
Bsp143I GATC 3 cut(s) 241, 493, 561
Bsp1720I GCTNAGC 1 cut(s) 1202
BspACI CCGC 4 cut(s) 82, 124, 522, 1267
BspANI GGCC 2 cut(s) 435, 1165
BspCNI CTCAG 3 cut(s) 785, 892, 1192
BspFNI CGCG 2 cut(s) 126, 145
BspHI TCATGA 2 cut(s) 175, 837
BspLI GGNNCC 2 cut(s) 311, 650
BspPI GGATC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 792
BsrI ACTGG 1 cut(s) 1283
BssECI CCNNGG 3 cut(s) 209, 668, 1017
BssMI GATC 3 cut(s) 241, 493, 561
BssNAI GTATAC 2 cut(s) 1175, 1275
BssT1I CCWWGG 1 cut(s) 209
Bst1107I GTATAC 2 cut(s) 1175, 1275
Bst2UI CCWGG 2 cut(s) 653, 669
Bst4CI ACNGT 5 cut(s) 31, 97, 418, 698, 952
BstBAI YACGTR 1 cut(s) 1148
BstC8I GCNNGC 3 cut(s) 128, 282, 1208
BstDEI CTNAG 6 cut(s) 321, 772, 900, 1179, 1202, 1278
BstF5I GGATG 2 cut(s) 222, 223
BstFNI CGCG 2 cut(s) 126, 145
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 3 cut(s) 244, 496, 564
BstMAI GTCTC 2 cut(s) 389, 834
BstMBI GATC 3 cut(s) 241, 493, 561
BstMWI GCNNNNNNNGC 2 cut(s) 803, 1207
BstNI CCWGG 2 cut(s) 653, 669
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 4 cut(s) 37, 503, 651, 667
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 416
BstUI CGCG 2 cut(s) 126, 145
BstV1I GCAGC 8 cut(s) 382, 468, 729, 733, 793, 892, 1058, 1222
BstV2I GAAGAC 2 cut(s) 912, 953
BstZ17I GTATAC 2 cut(s) 1175, 1275
Bsu36I CCTNAGG 1 cut(s) 1179
BsuRI GGCC 2 cut(s) 435, 1165
BtgZI GCGATG 1 cut(s) 1148
BtsCI GGATG 2 cut(s) 222, 223
Cac8I GCNNGC 3 cut(s) 128, 282, 1208
CciI TCATGA 2 cut(s) 175, 837
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 3 cut(s) 268, 434, 679
CsiI ACCWGGT 1 cut(s) 651
Csp6I GTAC 2 cut(s) 649, 992
CviAII CATG 8 cut(s) 176, 251, 472, 838, 910, 1003, 1127, 1170
CviQI GTAC 2 cut(s) 649, 992
DdeI CTNAG 6 cut(s) 321, 772, 900, 1179, 1202, 1278
DpnI GATC 3 cut(s) 243, 495, 563
DpnII GATC 3 cut(s) 241, 493, 561
DraI TTTAAA 1 cut(s) 1116
Eco130I CCWWGG 1 cut(s) 209
Eco147I AGGCCT 1 cut(s) 1165
Eco47I GGWCC 2 cut(s) 268, 679
Eco57I CTGAAG 1 cut(s) 957
Eco72I CACGTG 1 cut(s) 1148
Eco81I CCTNAGG 1 cut(s) 1179
EcoRII CCWGG 2 cut(s) 651, 667
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 8 cut(s) 179, 254, 475, 841, 913, 1006, 1130, 1173
FalI AAGNNNNNCTT 6 cut(s) 469, 501, 599, 631, 795, 827
FatI CATG 8 cut(s) 175, 250, 471, 837, 909, 1002, 1126, 1169
FauI CCCGC 1 cut(s) 1260
FblI GTMKAC 2 cut(s) 1174, 1274
FokI GGATG 2 cut(s) 209, 230
FspBI CTAG 2 cut(s) 210, 438
GlaI GCGC 1 cut(s) 146
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 2 cut(s) 435, 1165
HapII CCGG 2 cut(s) 39, 505
HhaI GCGC 1 cut(s) 147
Hin1II CATG 8 cut(s) 179, 254, 475, 841, 913, 1006, 1130, 1173
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 2 cut(s) 362, 1066
HpaII CCGG 2 cut(s) 39, 505
HphI GGTGA 2 cut(s) 556, 980
Hpy166II GTNNAC 4 cut(s) 103, 414, 1175, 1275
Hpy188I TCNGA 3 cut(s) 539, 901, 1071
Hpy188III TCNNGA 7 cut(s) 19, 176, 452, 643, 692, 838, 997
Hpy8I GTNNAC 4 cut(s) 103, 414, 1175, 1275
HpyAV CCTTC 3 cut(s) 40, 495, 1212
HpyCH4III ACNGT 5 cut(s) 31, 97, 418, 698, 952
HpyCH4IV ACGT 1 cut(s) 1147
HpyCH4V TGCA 9 cut(s) 7, 250, 305, 378, 414, 717, 864, 880, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 1207
HpyF3I CTNAG 6 cut(s) 321, 772, 900, 1179, 1202, 1278
HpySE526I ACGT 1 cut(s) 1147
Hsp92II CATG 8 cut(s) 179, 254, 475, 841, 913, 1006, 1130, 1173
HspAI GCGC 1 cut(s) 145
KpnI GGTACC 1 cut(s) 652
Kzo9I GATC 3 cut(s) 241, 493, 561
Lsp1109I GCAGC 8 cut(s) 382, 468, 729, 733, 793, 892, 1058, 1222
LweI GCATC 3 cut(s) 365, 729, 1125
MabI ACCWGGT 1 cut(s) 651
MaeI CTAG 2 cut(s) 210, 438
MaeII ACGT 1 cut(s) 1147
MaeIII GTNAC 4 cut(s) 609, 698, 919, 1148
MalI GATC 3 cut(s) 243, 495, 563
MboI GATC 3 cut(s) 241, 493, 561
MboII GAAGA 6 cut(s) 34, 236, 751, 917, 958, 1096
MfeI CAATTG 1 cut(s) 489
MhlI GDGCHC 2 cut(s) 416, 1010
MluCI AATT 5 cut(s) 13, 169, 203, 459, 489
MmeI TCCRAC 1 cut(s) 517
MroXI GAANNNNTTC 2 cut(s) 50, 544
MseI TTAA 2 cut(s) 825, 1115
MslI CAYNNNNRTG 1 cut(s) 926
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 2 cut(s) 39, 505
MspR9I CCNGG 4 cut(s) 39, 505, 653, 669
MunI CAATTG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 1048
MvaI CCWGG 2 cut(s) 653, 669
MvnI CGCG 2 cut(s) 126, 145
MwoI GCNNNNNNNGC 2 cut(s) 803, 1207
NciI CCSGG 2 cut(s) 39, 505
NdeII GATC 3 cut(s) 241, 493, 561
NlaIII CATG 8 cut(s) 179, 254, 475, 841, 913, 1006, 1130, 1173
NlaIV GGNNCC 2 cut(s) 311, 650
NmuCI GTSAC 3 cut(s) 609, 919, 1148
NspI RCATGY 1 cut(s) 254
PagI TCATGA 2 cut(s) 175, 837
PceI AGGCCT 1 cut(s) 1165
PctI GAATGC 1 cut(s) 1048
PdmI GAANNNNTTC 2 cut(s) 50, 544
PfeI GAWTC 2 cut(s) 362, 1066
PmaCI CACGTG 1 cut(s) 1148
PmlI CACGTG 1 cut(s) 1148
Ppu21I YACGTR 1 cut(s) 1148
PsiI TTATAA 1 cut(s) 636
Psp6I CCWGG 2 cut(s) 651, 667
PspCI CACGTG 1 cut(s) 1148
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 2 cut(s) 651, 667
PspN4I GGNNCC 2 cut(s) 311, 650
PspPI GGNCC 3 cut(s) 268, 434, 679
RsaI GTAC 2 cut(s) 650, 993
RsaNI GTAC 2 cut(s) 649, 992
RseI CAYNNNNRTG 1 cut(s) 926
SaqAI TTAA 2 cut(s) 825, 1115
Sau3AI GATC 3 cut(s) 241, 493, 561
Sau96I GGNCC 3 cut(s) 268, 434, 679
ScrFI CCNGG 4 cut(s) 39, 505, 653, 669
SduI GDGCHC 2 cut(s) 416, 1010
SexAI ACCWGGT 1 cut(s) 651
SfaNI GCATC 3 cut(s) 365, 729, 1125
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 2 cut(s) 268, 679
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 2 cut(s) 386, 643
SmoI CTYRAG 2 cut(s) 386, 643
Sse9I AATT 5 cut(s) 13, 169, 203, 459, 489
SseBI AGGCCT 1 cut(s) 1165
SsiI CCGC 4 cut(s) 82, 124, 522, 1267
SspI AATATT 1 cut(s) 513
SspMI CTAG 2 cut(s) 210, 438
StuI AGGCCT 1 cut(s) 1165
StyD4I CCNGG 4 cut(s) 37, 503, 651, 667
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 5 cut(s) 31, 97, 418, 698, 952
TaiI ACGT 1 cut(s) 1150
TaqII GACCGA 3 cut(s) 278, 696, 1031
TasI AATT 5 cut(s) 13, 169, 203, 459, 489
TauI GCSGC 2 cut(s) 85, 525
TfiI GAWTC 2 cut(s) 362, 1066
Tru1I TTAA 2 cut(s) 825, 1115
Tru9I TTAA 2 cut(s) 825, 1115
TseFI GTSAC 3 cut(s) 609, 919, 1148
TseI GCWGC 8 cut(s) 395, 481, 717, 746, 806, 880, 1046, 1210
Tsp45I GTSAC 3 cut(s) 609, 919, 1148
VneI GTGCAC 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 268, 679
XapI RAATTY 2 cut(s) 169, 203
XceI RCATGY 1 cut(s) 254
XmaJI CCTAGG 1 cut(s) 209
XmiI GTMKAC 2 cut(s) 1174, 1274
XmnI GAANNNNTTC 2 cut(s) 50, 544
XspI CTAG 2 cut(s) 210, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.