Prupe.5G046000_v2.0.a1

Involved in the biogenesis of the 60S ribosomal subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001573
Physical Location & Seq
Reverse (-)
4971839 .. 4974392
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G046000.2

Sequence Viewer

Length: 1515 bp
ATGGTGCAATATAACTTCAAGAAGATGACTGTTGTACCAAATGGGAAGGACTTCATTGACATCATCCTATCTCGCACCCAGAGGCAGACCCCAACTGTATTCCACAAGGATTATGCAATTTCCCGCCTCCGTACCTTCTATATGCGTAAAGTAAAATATACACAGCTGAATTTTCATGAGAAGCTCTCCACCATCATTGATGAGTTTCCTAGTCTGGATGACATCCACCCTTTCTATGGCAACCTTCTTCACGTTCTCTACAACAAAGACCATTACAAGCTTGCTCTTGGCCAAATCAGTACTGCCAGGAACCTTATTGGAAAGATTTCTAAAGATTATGTGAAATTGTTAAAGTATGGTGATTCACTTTACCGATGCAAATGTCTCAAGGTCGCTGCTCTTGGCTGCATGTGCACGGTTATAAATAGGATTGGTCCTAGTTTAGCTTACCTAGAACAAATTAGACAACACATGGCAAGGCTGCCTTCAATTGACCCTAATACCAGGACAATATTGGTTTGCGGCTGTCCGAATGTTGGAAAGAGCTCATTCATTAACAAGATCACTAGGGCTGATATGGATGTCCAGCCCTATGCTTTTACCACCAAGTCACTCTTTGTGGGACATACAGATTATAAATGCTCGAGGTACCAGGTAATTGATACACCAGGGATTTTGGACCGCCCATTTGAAGACCGTAACATTATTGAGATGTGCAGCATCATAGCTTTGGCTCACTTAAGAGCTGCAATATTGTTTTTCTTGGACATCTCGGGGTCTTGTGGGTACAGCATTGCCCAACAGGCAGCTCTTTTCCACTGTATTAAGTCTCTGTTTGTGAACAAACCATTGATTATAGTCTGCAACAAAACTGATTTGCAGCCATTGGAGGGTATATCTGAGGAAGACAAGAAGTTGGTCACTGAGATGAAAGCTGAAGCTATGAAGACAGTGATTGGTCAAGGTGGTGAGGCTTCCAATGATGAGGGGGTACTCTTTACCATGAGCACTCTGACTGAGGAGGGGGTTATTGCTGTAAAGAATGCAGCTTGTGAGAGGTTGTTGAATCAGAGAGTGGAATTGAAGATGAAATCCAAAAAGATAAATGACTGCTTAAATCGTTTTTATGTTGCAATGCCAAATCCATGTGACAATAAGGAAAGACCCCAATGTATACCTCAGGCAGTTTTAGAAGCTAAGGCTAAGCAAGCAGCAGAAAAGGATTTGGAGAATGAGAATGGCGGTGCCGGTGTATACTCTGCCAGTTTGAAGAAGAATTATATCTTAGCTAATGATGAATGGAAAGAGGATCTCATGCCAGAAATTCTTGATGGGCACAACGTATACGACTTTGTTGATCCTGATATTTTGCGTAGGCTTGAGGAGTTGGAACGAGAAGAAGGATTTCGGCAGGAAAAGGCGGGAGATGATGATTTTGAGATGGATGGATTGGAATTGACTCCAGAAGAGCAAAAGACATTGCATCACTTTCAATTCAGCTTGTCTTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1 NOGCT

Protein Analysis

505

Amino Acids

57.34

Weight (kDa)

6.48

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 422, 636
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 2 cut(s) 648, 1244
AccI GTMKAC 3 cut(s) 1174, 1254, 1344
AciI CCGC 5 cut(s) 124, 522, 682, 1242, 1421
AclWI GGATC 2 cut(s) 1317, 1352
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 2 cut(s) 169, 1323
AcuI CTGAAG 1 cut(s) 957
AfaI GTAC 6 cut(s) 36, 133, 301, 650, 788, 993
AfiI CCNNNNNNNGG 3 cut(s) 236, 536, 890
AflII CTTAAG 1 cut(s) 739
AgsI TTSAA 7 cut(s) 19, 489, 692, 1066, 1084, 1270, 1493
AjnI CCWGG 4 cut(s) 305, 503, 651, 667
Alw21I GWGCWC 3 cut(s) 416, 548, 1010
Alw26I GTCTC 2 cut(s) 389, 834
Alw44I GTGCAC 1 cut(s) 412
AlwI GGATC 2 cut(s) 1317, 1352
Ama87I CYCGRG 2 cut(s) 643, 772
AoxI GGCC 1 cut(s) 289
ApaLI GTGCAC 1 cut(s) 412
ApeKI GCWGC 9 cut(s) 395, 405, 481, 717, 746, 806, 880, 1046, 1211
ApoI RAATTY 2 cut(s) 169, 1323
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
Asp700I GAANNNNTTC 3 cut(s) 50, 325, 1404
Asp718I GGTACC 1 cut(s) 648
AspS9I GGNCC 2 cut(s) 434, 679
AsuHPI GGTGA 2 cut(s) 371, 980
AvaI CYCGRG 2 cut(s) 643, 772
AvaII GGWCC 2 cut(s) 434, 679
AxyI CCTNAGG 1 cut(s) 1179
BaeGI GKGCMC 2 cut(s) 416, 1338
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BalI TGGCCA 1 cut(s) 291
BanI GGYRCC 2 cut(s) 648, 1244
BanII GRGCYC 1 cut(s) 548
BbsI GAAGAC 3 cut(s) 699, 912, 953
Bbv12I GWGCWC 3 cut(s) 416, 548, 1010
BbvI GCAGC 9 cut(s) 382, 392, 468, 729, 733, 818, 892, 1058, 1223
BccI CCATC 4 cut(s) 200, 1325, 1435, 1439
BciT130I CCWGG 4 cut(s) 307, 505, 653, 669
BcoDI GTCTC 2 cut(s) 389, 834
BfaI CTAG 4 cut(s) 210, 438, 452, 567
BfrI CTTAAG 1 cut(s) 739
BglI GCCNNNNNGGC 1 cut(s) 803
BlpI GCTNAGC 1 cut(s) 1203
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 4 cut(s) 307, 505, 653, 669
Bme18I GGWCC 2 cut(s) 434, 679
BmeT110I CYCGRG 2 cut(s) 643, 772
BmgT120I GGNCC 2 cut(s) 434, 679
BmiI GGNNCC 3 cut(s) 311, 650, 1246
BmrFI CCNGG 4 cut(s) 307, 505, 653, 669
BmsI GCATC 3 cut(s) 365, 729, 1492
BpiI GAAGAC 3 cut(s) 699, 912, 953
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 1 cut(s) 1446
Bpu10I CCTNAGC 1 cut(s) 1197
Bpu1102I GCTNAGC 1 cut(s) 1203
BpuEI CTTGAG 2 cut(s) 371, 1400
BsaJI CCNNGG 1 cut(s) 668
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 536, 890
Bse118I RCCGGY 1 cut(s) 1247
Bse1I ACTGG 1 cut(s) 1263
Bse21I CCTNAGG 1 cut(s) 1179
Bse3DI GCAATG 3 cut(s) 792, 1140, 1478
BseBI CCWGG 4 cut(s) 307, 505, 653, 669
BseDI CCNNGG 1 cut(s) 668
BseGI GGATG 5 cut(s) 63, 222, 223, 586, 1450
BseLI CCNNNNNNNGG 3 cut(s) 236, 536, 890
BseMI GCAATG 3 cut(s) 792, 1140, 1478
BseMII CTCAG 4 cut(s) 891, 915, 1008, 1193
BseNI ACTGG 1 cut(s) 1263
BseRI GAGGAG 2 cut(s) 1034, 1397
BseSI GKGCMC 2 cut(s) 416, 1338
BseXI GCAGC 9 cut(s) 382, 392, 468, 729, 733, 818, 892, 1058, 1223
BsgI GTGCAG 1 cut(s) 736
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 2 cut(s) 648, 1244
BsiHKAI GWGCWC 3 cut(s) 416, 548, 1010
BsiHKCI CYCGRG 2 cut(s) 643, 772
BsiSI CCGG 1 cut(s) 1248
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 3 cut(s) 236, 536, 890
BsmAI GTCTC 2 cut(s) 389, 834
BsmFI GGGAC 1 cut(s) 636
BsmI GAATGC 1 cut(s) 1048
BsnI GGCC 1 cut(s) 291
BsoBI CYCGRG 2 cut(s) 643, 772
Bsp1286I GDGCHC 4 cut(s) 416, 548, 1010, 1338
Bsp143I GATC 3 cut(s) 561, 1309, 1357
Bsp1720I GCTNAGC 1 cut(s) 1203
BspACI CCGC 5 cut(s) 124, 522, 682, 1242, 1421
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 4 cut(s) 892, 916, 1009, 1192
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 3 cut(s) 311, 650, 1246
BspPI GGATC 2 cut(s) 1317, 1352
BspQI GCTCTTC 1 cut(s) 1461
BspT107I GGYRCC 2 cut(s) 648, 1244
BspTI CTTAAG 1 cut(s) 739
BsrDI GCAATG 3 cut(s) 792, 1140, 1478
BsrFI RCCGGY 1 cut(s) 1247
BsrI ACTGG 1 cut(s) 1263
BssAI RCCGGY 1 cut(s) 1247
BssECI CCNNGG 1 cut(s) 668
BssMI GATC 3 cut(s) 561, 1309, 1357
BssNAI GTATAC 3 cut(s) 1175, 1255, 1345
Bst1107I GTATAC 3 cut(s) 1175, 1255, 1345
Bst2UI CCWGG 4 cut(s) 307, 505, 653, 669
Bst4CI ACNGT 6 cut(s) 31, 97, 418, 698, 821, 952
Bst6I CTCTTC 1 cut(s) 1461
BstAFI CTTAAG 1 cut(s) 739
BstC8I GCNNGC 2 cut(s) 282, 1209
BstDEI CTNAG 7 cut(s) 900, 924, 1017, 1179, 1197, 1203, 1285
BstF5I GGATG 5 cut(s) 63, 222, 223, 586, 1450
BstKTI GATC 3 cut(s) 564, 1312, 1360
BstMAI GTCTC 2 cut(s) 389, 834
BstMBI GATC 3 cut(s) 561, 1309, 1357
BstMWI GCNNNNNNNGC 3 cut(s) 411, 803, 1208
BstNI CCWGG 4 cut(s) 307, 505, 653, 669
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 4 cut(s) 305, 503, 651, 667
BstSLI GKGCMC 2 cut(s) 416, 1338
BstV1I GCAGC 9 cut(s) 382, 392, 468, 729, 733, 818, 892, 1058, 1223
BstV2I GAAGAC 3 cut(s) 699, 912, 953
BstX2I RGATCY 1 cut(s) 1309
BstYI RGATCY 1 cut(s) 1309
BstZ17I GTATAC 3 cut(s) 1175, 1255, 1345
Bsu36I CCTNAGG 1 cut(s) 1179
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 5 cut(s) 63, 222, 223, 586, 1450
BtsIMutI CAGTG 3 cut(s) 817, 921, 957
Cac8I GCNNGC 2 cut(s) 282, 1209
CciI TCATGA 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 1247
Cfr13I GGNCC 2 cut(s) 434, 679
CsiI ACCWGGT 1 cut(s) 651
Csp6I GTAC 6 cut(s) 35, 132, 300, 649, 787, 992
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 6 cut(s) 176, 409, 472, 1003, 1146, 1315
CviQI GTAC 6 cut(s) 35, 132, 300, 649, 787, 992
DdeI CTNAG 7 cut(s) 900, 924, 1017, 1179, 1197, 1203, 1285
DpnI GATC 3 cut(s) 563, 1311, 1359
DpnII GATC 3 cut(s) 561, 1309, 1357
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 1461
EarI CTCTTC 1 cut(s) 1461
Ecl136II GAGCTC 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 434, 679
Eco53kI GAGCTC 1 cut(s) 546
Eco57I CTGAAG 1 cut(s) 957
Eco81I CCTNAGG 1 cut(s) 1179
Eco88I CYCGRG 2 cut(s) 643, 772
EcoICRI GAGCTC 1 cut(s) 546
EcoRII CCWGG 4 cut(s) 305, 503, 651, 667
EcoT38I GRGCYC 1 cut(s) 548
FaeI CATG 6 cut(s) 179, 412, 475, 1006, 1149, 1318
FalI AAGNNNNNCTT 4 cut(s) 469, 501, 599, 631
FaqI GGGAC 1 cut(s) 636
FatI CATG 6 cut(s) 175, 408, 471, 1002, 1145, 1314
FauI CCCGC 2 cut(s) 131, 1414
FblI GTMKAC 3 cut(s) 1174, 1254, 1344
FokI GGATG 5 cut(s) 50, 209, 230, 593, 1457
FriOI GRGCYC 1 cut(s) 548
FspBI CTAG 4 cut(s) 210, 438, 452, 567
GsuI CTGGAG 1 cut(s) 1446
HaeIII GGCC 1 cut(s) 291
HapII CCGG 1 cut(s) 1248
Hin1II CATG 6 cut(s) 179, 412, 475, 1006, 1149, 1318
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 3 cut(s) 362, 1066, 1459
HpaII CCGG 1 cut(s) 1248
HphI GGTGA 2 cut(s) 371, 980
Hpy166II GTNNAC 5 cut(s) 414, 841, 1175, 1255, 1345
Hpy188I TCNGA 4 cut(s) 531, 901, 1014, 1071
Hpy188III TCNNGA 6 cut(s) 19, 176, 215, 1328, 1361, 1463
Hpy8I GTNNAC 5 cut(s) 414, 841, 1175, 1255, 1345
HpyAV CCTTC 5 cut(s) 40, 145, 254, 495, 1394
HpyCH4III ACNGT 6 cut(s) 31, 97, 418, 698, 821, 952
HpyCH4IV ACGT 2 cut(s) 252, 1341
HpyF10VI GCNNNNNNNGC 3 cut(s) 411, 803, 1208
HpyF3I CTNAG 7 cut(s) 900, 924, 1017, 1179, 1197, 1203, 1285
HpySE526I ACGT 2 cut(s) 252, 1341
Hsp92II CATG 6 cut(s) 179, 412, 475, 1006, 1149, 1318
KpnI GGTACC 1 cut(s) 652
Kzo9I GATC 3 cut(s) 561, 1309, 1357
LguI GCTCTTC 1 cut(s) 1461
Lsp1109I GCAGC 9 cut(s) 382, 392, 468, 729, 733, 818, 892, 1058, 1223
LweI GCATC 3 cut(s) 365, 729, 1492
MabI ACCWGGT 1 cut(s) 651
MaeI CTAG 4 cut(s) 210, 438, 452, 567
MaeII ACGT 2 cut(s) 252, 1341
MaeIII GTNAC 4 cut(s) 609, 698, 919, 1148
MalI GATC 3 cut(s) 563, 1311, 1359
MboI GATC 3 cut(s) 561, 1309, 1357
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 1 cut(s) 1309
MhlI GDGCHC 4 cut(s) 416, 548, 1010, 1338
MlsI TGGCCA 1 cut(s) 291
MluNI TGGCCA 1 cut(s) 291
MlyI GAGTC 1 cut(s) 1453
MmeI TCCRAC 2 cut(s) 517, 1368
Mox20I TGGCCA 1 cut(s) 291
MroXI GAANNNNTTC 3 cut(s) 50, 325, 1404
MscI TGGCCA 1 cut(s) 291
MseI TTAA 5 cut(s) 350, 555, 740, 825, 1115
MslI CAYNNNNRTG 1 cut(s) 926
Msp20I TGGCCA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 166
MspCI CTTAAG 1 cut(s) 739
MspI CCGG 1 cut(s) 1248
MspR9I CCNGG 4 cut(s) 307, 505, 653, 669
MunI CAATTG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 1048
MvaI CCWGG 4 cut(s) 307, 505, 653, 669
MwoI GCNNNNNNNGC 3 cut(s) 411, 803, 1208
NdeII GATC 3 cut(s) 561, 1309, 1357
NlaIII CATG 6 cut(s) 179, 412, 475, 1006, 1149, 1318
NlaIV GGNNCC 3 cut(s) 311, 650, 1246
NmuCI GTSAC 3 cut(s) 609, 919, 1148
NspI RCATGY 1 cut(s) 412
PaeR7I CTCGAG 1 cut(s) 643
PagI TCATGA 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 1461
PctI GAATGC 1 cut(s) 1048
PdmI GAANNNNTTC 3 cut(s) 50, 325, 1404
PfeI GAWTC 2 cut(s) 362, 1066
PleI GAGTC 1 cut(s) 1453
PpsI GAGTC 1 cut(s) 1453
PsiI TTATAA 2 cut(s) 422, 636
Psp124BI GAGCTC 1 cut(s) 548
Psp6I CCWGG 4 cut(s) 305, 503, 651, 667
PspGI CCWGG 4 cut(s) 305, 503, 651, 667
PspN4I GGNNCC 3 cut(s) 311, 650, 1246
PspPI GGNCC 2 cut(s) 434, 679
PspXI VCTCGAGB 1 cut(s) 643
PsuI RGATCY 1 cut(s) 1309
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 6 cut(s) 36, 133, 301, 650, 788, 993
RsaNI GTAC 6 cut(s) 35, 132, 300, 649, 787, 992
RseI CAYNNNNRTG 1 cut(s) 926
SacI GAGCTC 1 cut(s) 548
SapI GCTCTTC 1 cut(s) 1461
SaqAI TTAA 5 cut(s) 350, 555, 740, 825, 1115
Sau3AI GATC 3 cut(s) 561, 1309, 1357
Sau96I GGNCC 2 cut(s) 434, 679
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 1 cut(s) 1453
ScrFI CCNGG 4 cut(s) 307, 505, 653, 669
SduI GDGCHC 4 cut(s) 416, 548, 1010, 1338
SexAI ACCWGGT 1 cut(s) 651
SfaNI GCATC 3 cut(s) 365, 729, 1492
Sfr274I CTCGAG 1 cut(s) 643
SinI GGWCC 2 cut(s) 434, 679
SlaI CTCGAG 1 cut(s) 643
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 4 cut(s) 386, 643, 739, 1379
SmoI CTYRAG 4 cut(s) 386, 643, 739, 1379
SsiI CCGC 5 cut(s) 124, 522, 682, 1242, 1421
SspI AATATT 2 cut(s) 513, 753
SspMI CTAG 4 cut(s) 210, 438, 452, 567
SstI GAGCTC 1 cut(s) 548
StyD4I CCNGG 4 cut(s) 305, 503, 651, 667
TaaI ACNGT 6 cut(s) 31, 97, 418, 698, 821, 952
TaiI ACGT 2 cut(s) 255, 1344
TaqI TCGA 1 cut(s) 644
TatI WGTACW 1 cut(s) 299
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 2 cut(s) 362, 1066
Tru1I TTAA 5 cut(s) 350, 555, 740, 825, 1115
Tru9I TTAA 5 cut(s) 350, 555, 740, 825, 1115
TscAI CASTG 3 cut(s) 824, 928, 957
TseFI GTSAC 3 cut(s) 609, 919, 1148
TseI GCWGC 9 cut(s) 395, 405, 481, 717, 746, 806, 880, 1046, 1211
Tsp45I GTSAC 3 cut(s) 609, 919, 1148
TspDTI ATGAA 7 cut(s) 43, 164, 541, 944, 959, 1103, 1311
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 3 cut(s) 824, 928, 957
Vha464I CTTAAG 1 cut(s) 739
VneI GTGCAC 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 434, 679
XapI RAATTY 2 cut(s) 169, 1323
XceI RCATGY 1 cut(s) 412
XcmI CCANNNNNNNNNTGG 2 cut(s) 233, 511
XhoI CTCGAG 1 cut(s) 643
XmiI GTMKAC 3 cut(s) 1174, 1254, 1344
XmnI GAANNNNTTC 3 cut(s) 50, 325, 1404
XspI CTAG 4 cut(s) 210, 438, 452, 567
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.