Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Forward (+)

24236088 .. 24240728

Gene Structure 4641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTCTCAAAGCTTCACCTGTTACCGGATTATTCCCTCCTCTCCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCTTCTAATCGCCCTTGTTCCCTCAGGATTCTCCCTCTCAGAACATCTTTCTTCGGTAACTCAAGTGGAGCGCTGAGAGTGAATGTGTTGAGATTAGCTTGTGATAATAGACTCAGGTGCAATGGTCATGGTGCTACTATGAATCTTTTTGAACGATTTTCTAGAGTGGTCAAGTCATATGCAAATGCGCTCATAAGCTCTTTTGAAGACCCGGAGAAAATCCTGGAGCAAACTGTCATTGAAATGAATAGTGATTTGACAAAGATGCGTCAAGCCACTGCACAGGTTTTAGCATCACAAAAGCAGTTACAGAACAAATATAAAGCTGCACAGCAGTCTTCTGATGATTGGTACAAAAGAGCACAACTTGCTCTTGCAAAAGGAGATGAGGATCTTGCACGTGAGGCCCTTAAACGACGAAAGTCTTTTGCTGACAACGCTACTGCTTTGAAAACTCAACTAGATCAGCAAAAAGGTGTTGTCGACAATCTTGTTTCAAATACAAGGCTCTTGGAGAGTAAGATACAAGAGGCAAAAGCAAAGAAAGATACGCTCCTTGCACGTGCTCGCACTGCTAAGACTGCAACCAAAGTGCAAGAGATGATAGGGACAGTAAATACAAGCGGTGCTCTTTCAGCTTTTGAGAAAATGGAGGAGAAAGTTATGGCTATGGAGTCTGAAGCAGATGCACTAACTCAGATTGGAACCGATGAACTCGAGGGGAAGTTTCAAATGCTTGAAACTTCATCTGTGGATGATGATCTTGCAGACTTGAAGAAAGAATTGTCTGGAAGCTCAAAGAAAGGAGAGCTTCCTCCAGGGAGAAGCACTGTTGCAGCAAGCACGAGATACCCTTTCAAAGACTCAGAGATCGAGAATGAGTTAAACGAACTGCGAAGGAAAGCTAACGACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009508 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009706 GO:0009941 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0016050 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042170 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

330

Amino Acids

36.39

Weight (kDa)

9.18

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	73 - 285	3.5e-53	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	558
AciI	CCGC	1 cut(s)	699
AclWI	GGATC	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	774
AcvI	CACGTG	2 cut(s)	476, 638
AfaI	GTAC	1 cut(s)	428
AfeI	AGCGCT	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	9 cut(s)	227, 281, 317, 526, 573, 806, 815, 850, 934
AjnI	CCWGG	2 cut(s)	297, 892
AluBI	AGCT	8 cut(s)	14, 173, 273, 401, 713, 870, 886, 980
AluI	AGCT	8 cut(s)	14, 173, 273, 401, 713, 870, 886, 980
Alw21I	GWGCWC	3 cut(s)	439, 643, 706
AlwI	GGATC	1 cut(s)	474
Ama87I	CYCGRG	1 cut(s)	791
Aor51HI	AGCGCT	1 cut(s)	147
AoxI	GGCC	1 cut(s)	480
ApeKI	GCWGC	2 cut(s)	401, 911
AspLEI	GCGC	2 cut(s)	148, 265
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	9
AvaI	CYCGRG	1 cut(s)	791
AxyI	CCTNAGG	1 cut(s)	98
BauI	CACGAG	1 cut(s)	919
BbrPI	CACGTG	2 cut(s)	476, 638
BbsI	GAAGAC	2 cut(s)	288, 405
Bbv12I	GWGCWC	3 cut(s)	439, 643, 706
BbvI	GCAGC	2 cut(s)	388, 923
BciT130I	CCWGG	2 cut(s)	299, 894
BcnI	CCSGG	1 cut(s)	287
BfaI	CTAG	2 cut(s)	237, 536
BfoI	RGCGCY	1 cut(s)	149
BisI	GCNGC	2 cut(s)	402, 912
BlsI	GCNGC	2 cut(s)	403, 913
Bme1390I	CCNGG	3 cut(s)	287, 299, 894
BmeT110I	CYCGRG	1 cut(s)	791
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	781
BmrFI	CCNGG	3 cut(s)	287, 299, 894
BmsI	GCATC	3 cut(s)	330, 377, 751
BoxI	GACNNNNGTC	1 cut(s)	496
BpiI	GAAGAC	2 cut(s)	288, 405
BpmI	CTGGAG	2 cut(s)	320, 876
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	287
BsaAI	YACGTR	2 cut(s)	476, 638
BsaBI	GATNNNNATC	2 cut(s)	465, 834
BsaJI	CCNNGG	1 cut(s)	893
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse21I	CCTNAGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	202
Bse8I	GATNNNNATC	2 cut(s)	465, 834
BseBI	CCWGG	2 cut(s)	299, 894
BseDI	CCNNGG	1 cut(s)	893
BseGI	GGATG	1 cut(s)	835
BseJI	GATNNNNATC	2 cut(s)	465, 834
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	6 cut(s)	112, 127, 140, 202, 785, 954
BseRI	GAGGAG	2 cut(s)	30, 743
BseXI	GCAGC	2 cut(s)	388, 923
BsgI	GTGCAG	2 cut(s)	339, 387
BshFI	GGCC	1 cut(s)	482
BsiHKAI	GWGCWC	3 cut(s)	439, 643, 706
BsiHKCI	CYCGRG	1 cut(s)	791
BsiSI	CCGG	2 cut(s)	27, 287
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	697
BsnI	GGCC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	791
Bsp1286I	GDGCHC	3 cut(s)	439, 643, 706
Bsp143I	GATC	4 cut(s)	466, 538, 835, 945
BspACI	CCGC	1 cut(s)	699
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	6 cut(s)	111, 126, 141, 201, 784, 953
BspLI	GGNNCC	1 cut(s)	781
BspPI	GGATC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	893
BssMI	GATC	4 cut(s)	466, 538, 835, 945
BssSI	CACGAG	1 cut(s)	919
Bst2BI	CACGAG	1 cut(s)	919
Bst2UI	CCWGG	2 cut(s)	299, 894
Bst4CI	ACNGT	3 cut(s)	310, 688, 907
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstBAI	YACGTR	2 cut(s)	476, 638
BstC8I	GCNNGC	2 cut(s)	643, 916
BstDEI	CTNAG	7 cut(s)	98, 113, 149, 188, 651, 771, 940
BstF5I	GGATG	1 cut(s)	835
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	2 cut(s)	148, 265
BstKTI	GATC	4 cut(s)	469, 541, 838, 948
BstMBI	GATC	4 cut(s)	466, 538, 835, 945
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 443, 479, 512, 647, 656, 710
BstNI	CCWGG	2 cut(s)	299, 894
BstPAI	GACNNNNGTC	1 cut(s)	496
BstSCI	CCNGG	3 cut(s)	285, 297, 892
BstV1I	GCAGC	2 cut(s)	388, 923
BstV2I	GAAGAC	2 cut(s)	288, 405
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
Bsu36I	CCTNAGG	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	482
BtsCI	GGATG	1 cut(s)	835
BtsI	GCAGTG	2 cut(s)	351, 645
BtsIMutI	CAGTG	3 cut(s)	351, 645, 903
Cac8I	GCNNGC	2 cut(s)	643, 916
CfoI	GCGC	2 cut(s)	148, 265
Cfr13I	GGNCC	1 cut(s)	481
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	7 cut(s)	98, 113, 149, 188, 651, 771, 940
DpnI	GATC	4 cut(s)	468, 540, 837, 947
DpnII	GATC	4 cut(s)	466, 538, 835, 945
Eco47III	AGCGCT	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	774
Eco72I	CACGTG	2 cut(s)	476, 638
Eco81I	CCTNAGG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	791
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	297, 892
FaeI	CATG	1 cut(s)	206
FaiI	YATR	8 cut(s)	204, 215, 253, 255, 269, 396, 740, 746
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	1 cut(s)	202
FauNDI	CATATG	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	2 cut(s)	402, 912
FokI	GGATG	1 cut(s)	842
Fsp4HI	GCNGC	2 cut(s)	402, 912
FspBI	CTAG	2 cut(s)	237, 536
GlaI	GCGC	2 cut(s)	147, 264
GluI	GCNGC	2 cut(s)	402, 912
GsuI	CTGGAG	2 cut(s)	320, 876
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	482
HapII	CCGG	2 cut(s)	27, 287
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	2 cut(s)	148, 265
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	2 cut(s)	146, 263
HinP1I	GCGC	2 cut(s)	146, 263
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	5 cut(s)	103, 186, 217, 749, 938
HpaII	CCGG	2 cut(s)	27, 287
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	5 cut(s)	116, 418, 754, 774, 943
Hpy188III	TCNNGA	4 cut(s)	100, 237, 864, 949
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	2 cut(s)	78, 966
HpyCH4III	ACNGT	3 cut(s)	310, 688, 907
HpyCH4IV	ACGT	2 cut(s)	475, 637
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 443, 479, 512, 647, 656, 710
HpyF3I	CTNAG	7 cut(s)	98, 113, 149, 188, 651, 771, 940
HpySE526I	ACGT	2 cut(s)	475, 637
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	2 cut(s)	146, 263
Kzo9I	GATC	4 cut(s)	466, 538, 835, 945
LmnI	GCTCC	3 cut(s)	143, 301, 633
Lsp1109I	GCAGC	2 cut(s)	388, 923
LweI	GCATC	3 cut(s)	330, 377, 751
MaeI	CTAG	2 cut(s)	237, 536
MaeII	ACGT	2 cut(s)	475, 637
MaeIII	GTNAC	3 cut(s)	22, 131, 381
MalI	GATC	4 cut(s)	468, 540, 837, 947
MboI	GATC	4 cut(s)	466, 538, 835, 945
MboII	GAAGA	7 cut(s)	51, 54, 69, 118, 293, 405, 862
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	3 cut(s)	439, 643, 706
MluCI	AATT	1 cut(s)	857
MlyI	GAGTC	3 cut(s)	180, 758, 932
MseI	TTAA	2 cut(s)	486, 959
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	2 cut(s)	27, 287
MspR9I	CCNGG	3 cut(s)	287, 299, 894
MvaI	CCWGG	2 cut(s)	299, 894
MwoI	GCNNNNNNNGC	7 cut(s)	11, 443, 479, 512, 647, 656, 710
NciI	CCSGG	1 cut(s)	287
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	4 cut(s)	466, 538, 835, 945
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	781
PaeR7I	CTCGAG	1 cut(s)	791
PfeI	GAWTC	2 cut(s)	103, 217
PfoI	TCCNGGA	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	403, 913
PleI	GAGTC	3 cut(s)	180, 757, 932
PmaCI	CACGTG	2 cut(s)	476, 638
PmlI	CACGTG	2 cut(s)	476, 638
PpsI	GAGTC	3 cut(s)	180, 757, 932
Ppu21I	YACGTR	2 cut(s)	476, 638
PshAI	GACNNNNGTC	1 cut(s)	496
Psp6I	CCWGG	2 cut(s)	297, 892
PspCI	CACGTG	2 cut(s)	476, 638
PspGI	CCWGG	2 cut(s)	297, 892
PspN4I	GGNNCC	1 cut(s)	781
PspPI	GGNCC	1 cut(s)	481
PspXI	VCTCGAGB	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	557
SaqAI	TTAA	2 cut(s)	486, 959
SatI	GCNGC	2 cut(s)	402, 912
Sau3AI	GATC	4 cut(s)	466, 538, 835, 945
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	3 cut(s)	180, 758, 932
ScrFI	CCNGG	3 cut(s)	287, 299, 894
SduI	GDGCHC	3 cut(s)	439, 643, 706
SfaNI	GCATC	3 cut(s)	330, 377, 751
Sfr274I	CTCGAG	1 cut(s)	791
SlaI	CTCGAG	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	136, 791
SmoI	CTYRAG	2 cut(s)	136, 791
Sse9I	AATT	1 cut(s)	857
SsiI	CCGC	1 cut(s)	699
SspMI	CTAG	2 cut(s)	237, 536
StyD4I	CCNGG	3 cut(s)	285, 297, 892
TaaI	ACNGT	3 cut(s)	310, 688, 907
TaiI	ACGT	2 cut(s)	478, 640
TaqI	TCGA	4 cut(s)	71, 558, 792, 948
TasI	AATT	1 cut(s)	857
TfiI	GAWTC	2 cut(s)	103, 217
Tru1I	TTAA	2 cut(s)	486, 959
Tru9I	TTAA	2 cut(s)	486, 959
TscAI	CASTG	3 cut(s)	358, 652, 910
TseI	GCWGC	2 cut(s)	401, 911
TspDTI	ATGAA	4 cut(s)	230, 335, 801, 810
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	3 cut(s)	358, 652, 910
XbaI	TCTAGA	1 cut(s)	236
XhoI	CTCGAG	1 cut(s)	791
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	2 cut(s)	237, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.