Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001989.1

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 4584

Gene Structure 4584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001989.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggccaccaaattgcagatatttacaggattgaccatggcttcaactcccgcctcttcgttccaatccccgccttcttcttcctcctcatcctccaccaccctctccatggtcaggagacctctcacgacgtcgtttttcaacggcggagtgggagctctaaaagttgaagtcattagggttgctccttccaataagcgacatcattcaagacaacgtggaggtgctctcggtgcccgtatgaacctttttgaccggttttctagagttatcaagtcatatgcaaatgcaatcataagttcctttgaagatcctgagaaaatcttggagcaagcagttcttgaaatgaatgatgacttgacaaagatgcgtcaggccacagcacaggtattggcttctcaaaaacgattggaaaataagtacaaagctgcgcaacaagcgtctgaggactggtatcgaaaagcacaattagctcttcagaaaggagaggaggatcttgcacgtgaagctctgaagaggcgtaaatcttttgcggataatgcaaattctttgagaacgcaacttgatcaacaaaaaggtgttgttgataatcttgtgtctaatacaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

203

Amino Acids

22.5

Weight (kDa)

10.17

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
Acc16I	TGCGCA	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	233
AciI	CCGC	4 cut(s)	51, 71, 147, 533
AclWI	GGATC	2 cut(s)	305, 501
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	2 cut(s)	461, 533
AcvI	CACGTG	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	2 cut(s)	109, 114
AgeI	ACCGGT	1 cut(s)	255
AgsI	TTSAA	6 cut(s)	45, 142, 170, 210, 308, 344
AluBI	AGCT	4 cut(s)	158, 428, 473, 509
AluI	AGCT	4 cut(s)	158, 428, 473, 509
Alw21I	GWGCWC	2 cut(s)	160, 229
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	305, 501
AoxI	GGCC	2 cut(s)	3, 375
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	544
AsiGI	ACCGGT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	160
BbrPI	CACGTG	1 cut(s)	503
Bbv12I	GWGCWC	2 cut(s)	160, 229
BbvI	GCAGC	1 cut(s)	415
BceAI	ACGGC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BsaAI	YACGTR	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	36, 108
BsaWI	WCCGGW	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 114
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	36, 108
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	109, 114
BseMII	CTCAG	2 cut(s)	306, 435
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	2 cut(s)	76, 503
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	2 cut(s)	5, 377
BshNI	GGYRCC	1 cut(s)	233
BshTI	ACCGGT	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	160, 229
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	109, 114
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	5, 377
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	3 cut(s)	160, 229, 238
Bsp143I	GATC	3 cut(s)	310, 493, 565
Bsp19I	CCATGG	2 cut(s)	36, 108
BspACI	CCGC	4 cut(s)	51, 71, 147, 533
BspANI	GGCC	2 cut(s)	5, 377
BspCNI	CTCAG	2 cut(s)	307, 436
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	305, 501
BspQI	GCTCTTC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	36, 108
BssMI	GATC	3 cut(s)	310, 493, 565
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	2 cut(s)	36, 108
Bst6I	CTCTTC	3 cut(s)	61, 480, 509
BstACI	GRCGYC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	315, 444
BstDSI	CCRYGG	2 cut(s)	36, 108
BstF5I	GGATG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	3 cut(s)	313, 496, 568
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	3 cut(s)	310, 493, 565
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 437, 470, 506, 539
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	2 cut(s)	310, 493
BstYI	RGATCY	2 cut(s)	310, 493
BsuRI	GGCC	2 cut(s)	5, 377
BtgI	CCRYGG	2 cut(s)	36, 108
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	255
CseI	GACGC	2 cut(s)	359, 429
Csp6I	GTAC	1 cut(s)	421
CspAI	ACCGGT	1 cut(s)	255
CviAII	CATG	2 cut(s)	37, 109
CviJI	RGCY	8 cut(s)	5, 41, 158, 377, 395, 428, 473, 509
CviKI_1	RGCY	8 cut(s)	5, 41, 158, 377, 395, 428, 473, 509
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	315, 444
DpnI	GATC	3 cut(s)	312, 495, 567
DpnII	GATC	3 cut(s)	310, 493, 565
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	61, 480, 509
EarI	CTCTTC	3 cut(s)	61, 480, 509
EciI	GGCGGA	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	36, 108
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	158
Eco57I	CTGAAG	2 cut(s)	461, 533
Eco72I	CACGTG	1 cut(s)	503
EcoICRI	GAGCTC	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	36, 108
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	2 cut(s)	36, 108
FaeI	CATG	2 cut(s)	40, 112
FaiI	YATR	6 cut(s)	38, 110, 242, 280, 282, 296
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	2 cut(s)	36, 108
FauI	CCCGC	2 cut(s)	58, 78
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	264
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	5, 377
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	2 cut(s)	359, 429
HhaI	GCGC	1 cut(s)	433
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	40, 112
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HpaII	CCGG	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	445, 480, 513
Hpy188III	TCNNGA	6 cut(s)	115, 127, 210, 264, 314, 341
Hpy99I	CGWCG	2 cut(s)	133, 136
HpyAV	CCTTC	2 cut(s)	84, 198
HpyCH4IV	ACGT	3 cut(s)	131, 217, 502
HpyCH4V	TGCA	5 cut(s)	16, 284, 290, 500, 542
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 437, 470, 506, 539
HpyF3I	CTNAG	2 cut(s)	315, 444
HpySE526I	ACGT	3 cut(s)	131, 217, 502
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	40, 112
HspAI	GCGC	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	3 cut(s)	310, 493, 565
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	3 cut(s)	155, 190, 328
LpnPI	CCDG	7 cut(s)	12, 100, 269, 327, 359, 371, 436
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	3 cut(s)	131, 217, 502
MalI	GATC	3 cut(s)	312, 495, 567
MboI	GATC	3 cut(s)	310, 493, 565
MboII	GAAGA	6 cut(s)	48, 69, 72, 320, 467, 526
MflI	RGATCY	2 cut(s)	310, 493
MhlI	GDGCHC	3 cut(s)	160, 229, 238
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	11, 467, 544
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	5 cut(s)	233, 437, 470, 506, 539
NcoI	CCATGG	2 cut(s)	36, 108
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	3 cut(s)	310, 493, 565
NlaIII	CATG	2 cut(s)	40, 112
NlaIV	GGNNCC	1 cut(s)	235
NsbI	TGCGCA	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	480
PinAI	ACCGGT	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	430
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	503
Psp124BI	GAGCTC	1 cut(s)	160
PspCI	CACGTG	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	235
PsuI	RGATCY	2 cut(s)	310, 493
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SacI	GAGCTC	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	480
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	3 cut(s)	310, 493, 565
SduI	GDGCHC	3 cut(s)	160, 229, 238
SfaNI	GCATC	1 cut(s)	357
Sse9I	AATT	3 cut(s)	11, 467, 544
SsiI	CCGC	4 cut(s)	51, 71, 147, 533
SspMI	CTAG	1 cut(s)	264
SstI	GAGCTC	1 cut(s)	160
StyI	CCWWGG	2 cut(s)	36, 108
TaiI	ACGT	3 cut(s)	134, 220, 505
TaqI	TCGA	1 cut(s)	457
TasI	AATT	3 cut(s)	11, 467, 544
TatI	WGTACW	1 cut(s)	420
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	257, 362
XapI	RAATTY	1 cut(s)	544
XbaI	TCTAGA	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	1 cut(s)	264
ZraI	GACGTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.