Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Forward (+)

48464027 .. 48470345

Gene Structure 6319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG288200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCCACCAAATTGCAGATATTTACAGGATTGACCATGGCTTCAACTCCCGCCTCTTCGTTCCAATCCCCGCCTTCTTCTTCCTCCTCATCCTCCACCACCCTCTCCATGGTCAGGAGACCTCTCGCGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTGAAGTCATTAGGGTTGCTCCTTCCAATAAGCGACATCATTCAAGACAACGTGGAGGTGCTCTCGGTGCCCGTATGAACCTTTTTGACCGGTTTTCTAGAGTTATCAAGTCATATGCAAATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAATCTTGGAGCAAGCAGTTCTTGAAATGAATGATGACTTGACAAAGATGCGTCAGGCCACAGCACAGGTATTGGCTTCTCAAAAACGATTGGAAAATAAGTACAAAGCTGCGCAACAAGCGTCTGAGGACTGGTATCGAAAAGCACAATTAGCTCTTCAGAAAGGAGAGGAGGATCTTGCACGTGAAGCTCTGAAGAGGCGTAAATCTTTTGCGGATAATGCAAATTCTTTGAGAACGCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTGTCTAATACAAAGCTTTTAGAGAGCAAGATTCAAGAAGCAAGATCGAAAAAAGATACCCTCAAAGCACGCGCTCAGTCTGCAAAGACTGCTACTAAAGTGAGTGAGATGGTGGGGAATGTCAATACAAGTAGTGCCCTTTCCGCTTTTGACAAGATGGAGGAGAAAGTCCTGGCAATGGAATCCCAAGCAGAAGCTCTTGGCCAGTTAACTACAGACGATCTGGAAGGAAAGTTTGCGATGCTAGAGAGCTCTTCTGTTGATGATGATCTTGCAAGCTTGAAGAAAGAACTGTCTGGTAGTTCAAAGAAAGGAGATCTTCCACCCGGAAGAACTGTTACTCCCAGTTCAAACAAGGCATATCCATTCAAGGATTCTGAAATTGAAATGGAGCTTAATGAATTGAGACGGAAAGCGCAGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

340

Amino Acids

37.38

Weight (kDa)

9.47

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	82 - 295	4.8e-53	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
Acc16I	TGCGCA	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	2 cut(s)	128, 666
AciI	CCGC	5 cut(s)	51, 71, 147, 533, 738
AclWI	GGATC	2 cut(s)	305, 501
AcoI	YGGCCR	2 cut(s)	3, 796
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	2 cut(s)	461, 533
AcvI	CACGTG	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	109, 114, 772
AgeI	ACCGGT	1 cut(s)	255
AjnI	CCWGG	1 cut(s)	765
AloI	GAACNNNNNNTCC	2 cut(s)	919, 951
AluBI	AGCT	9 cut(s)	158, 428, 473, 509, 610, 791, 846, 873, 988
AluI	AGCT	9 cut(s)	158, 428, 473, 509, 610, 791, 846, 873, 988
Alw21I	GWGCWC	3 cut(s)	160, 229, 848
Alw26I	GTCTC	2 cut(s)	112, 994
AlwI	GGATC	2 cut(s)	305, 501
AoxI	GGCC	3 cut(s)	3, 375, 796
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	544
AsiGI	ACCGGT	1 cut(s)	255
AspLEI	GCGC	3 cut(s)	433, 668, 1012
AsuC2I	CCSGG	1 cut(s)	921
BaeGI	GKGCMC	2 cut(s)	238, 733
BalI	TGGCCA	2 cut(s)	5, 798
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	2 cut(s)	160, 848
BarI	GAAGNNNNNNTAC	2 cut(s)	916, 948
BbrPI	CACGTG	1 cut(s)	503
Bbv12I	GWGCWC	3 cut(s)	160, 229, 848
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	697, 745
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	767
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	921
BcoDI	GTCTC	2 cut(s)	112, 994
BfaI	CTAG	2 cut(s)	264, 839
BfmI	CTRYAG	1 cut(s)	807
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	2 cut(s)	767, 921
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	767, 921
BmrI	ACTGGG	1 cut(s)	933
BmsI	GCATC	2 cut(s)	357, 825
BmuI	ACTGGG	1 cut(s)	933
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpuMI	CCSGG	1 cut(s)	921
BsaAI	YACGTR	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	36, 108
BsaWI	WCCGGW	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	919, 949
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 114, 772
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	3 cut(s)	455, 799, 939
Bse3DI	GCAATG	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	767
BseDI	CCNNGG	2 cut(s)	36, 108
BseGI	GGATG	1 cut(s)	89
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	3 cut(s)	109, 114, 772
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	3 cut(s)	306, 435, 683
BseNI	ACTGG	3 cut(s)	455, 799, 939
BseRI	GAGGAG	3 cut(s)	76, 503, 770
BseSI	GKGCMC	2 cut(s)	238, 733
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	2 cut(s)	128, 666
BshFI	GGCC	3 cut(s)	5, 377, 798
BshNI	GGYRCC	1 cut(s)	233
BshTI	ACCGGT	1 cut(s)	255
BsiHKAI	GWGCWC	3 cut(s)	160, 229, 848
BsiSI	CCGG	2 cut(s)	256, 921
BslI	CCNNNNNNNGG	3 cut(s)	109, 114, 772
BsmAI	GTCTC	2 cut(s)	112, 994
BsmBI	CGTCTC	1 cut(s)	994
BsnI	GGCC	3 cut(s)	5, 377, 798
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	5 cut(s)	160, 229, 238, 733, 848
Bsp143I	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
Bsp19I	CCATGG	2 cut(s)	36, 108
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	5 cut(s)	51, 71, 147, 533, 738
BspANI	GGCC	3 cut(s)	5, 377, 798
BspCNI	CTCAG	3 cut(s)	307, 436, 682
BspFNI	CGCG	2 cut(s)	128, 666
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	305, 501
BspQI	GCTCTTC	2 cut(s)	480, 853
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	455, 799, 939
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	36, 108
BssMI	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	2 cut(s)	36, 108
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	2 cut(s)	888, 931
Bst6I	CTCTTC	4 cut(s)	61, 480, 509, 853
BstACI	GRCGYC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	333, 664, 871
BstDEI	CTNAG	3 cut(s)	315, 444, 669
BstDSI	CCRYGG	2 cut(s)	36, 108
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	2 cut(s)	128, 666
BstHHI	GCGC	3 cut(s)	433, 668, 1012
BstKTI	GATC	7 cut(s)	313, 496, 568, 641, 817, 865, 913
BstMAI	GTCTC	2 cut(s)	112, 994
BstMBI	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
BstMWI	GCNNNNNNNGC	8 cut(s)	233, 437, 470, 506, 539, 674, 683, 737
BstNI	CCWGG	1 cut(s)	767
BstSCI	CCNGG	2 cut(s)	765, 919
BstSFI	CTRYAG	1 cut(s)	807
BstSLI	GKGCMC	2 cut(s)	238, 733
BstUI	CGCG	2 cut(s)	128, 666
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	3 cut(s)	310, 493, 910
BstYI	RGATCY	3 cut(s)	310, 493, 910
BsuRI	GGCC	3 cut(s)	5, 377, 798
BtgI	CCRYGG	2 cut(s)	36, 108
BtgZI	GCGATG	1 cut(s)	848
BtsCI	GGATG	1 cut(s)	89
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	3 cut(s)	333, 664, 871
CfoI	GCGC	3 cut(s)	433, 668, 1012
Cfr10I	RCCGGY	1 cut(s)	255
CseI	GACGC	2 cut(s)	359, 429
Csp6I	GTAC	1 cut(s)	421
CspAI	ACCGGT	1 cut(s)	255
CviAII	CATG	2 cut(s)	37, 109
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	3 cut(s)	315, 444, 669
DpnI	GATC	7 cut(s)	312, 495, 567, 640, 816, 864, 912
DpnII	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
EaeI	YGGCCR	2 cut(s)	3, 796
Eam1104I	CTCTTC	4 cut(s)	61, 480, 509, 853
EarI	CTCTTC	4 cut(s)	61, 480, 509, 853
EciI	GGCGGA	1 cut(s)	162
Ecl136II	GAGCTC	2 cut(s)	158, 846
Eco130I	CCWWGG	2 cut(s)	36, 108
Eco24I	GRGCYC	2 cut(s)	160, 848
Eco31I	GGTCTC	1 cut(s)	112
Eco53kI	GAGCTC	2 cut(s)	158, 846
Eco57I	CTGAAG	2 cut(s)	461, 533
Eco72I	CACGTG	1 cut(s)	503
EcoICRI	GAGCTC	2 cut(s)	158, 846
EcoRII	CCWGG	1 cut(s)	765
EcoT14I	CCWWGG	2 cut(s)	36, 108
EcoT38I	GRGCYC	2 cut(s)	160, 848
ErhI	CCWWGG	2 cut(s)	36, 108
Esp3I	CGTCTC	1 cut(s)	994
FaeI	CATG	2 cut(s)	40, 112
FaiI	YATR	7 cut(s)	38, 110, 242, 280, 282, 296, 955
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 897, 929
FatI	CATG	2 cut(s)	36, 108
FauI	CCCGC	2 cut(s)	58, 78
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	2 cut(s)	160, 848
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	264, 839
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	3 cut(s)	432, 667, 1011
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	5, 377, 798
HapII	CCGG	2 cut(s)	256, 921
HgaI	GACGC	2 cut(s)	359, 429
HhaI	GCGC	3 cut(s)	433, 668, 1012
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	40, 112
Hin6I	GCGC	3 cut(s)	431, 666, 1010
HinP1I	GCGC	3 cut(s)	431, 666, 1010
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HindIII	AAGCTT	2 cut(s)	608, 871
HinfI	GANTC	3 cut(s)	625, 776, 968
HpaI	GTTAAC	1 cut(s)	804
HpaII	CCGG	2 cut(s)	256, 921
Hpy166II	GTNNAC	1 cut(s)	804
Hpy188I	TCNGA	4 cut(s)	445, 480, 513, 973
Hpy188III	TCNNGA	8 cut(s)	115, 127, 210, 264, 314, 341, 629, 818
Hpy8I	GTNNAC	1 cut(s)	804
Hpy99I	CGWCG	2 cut(s)	133, 136
HpyAV	CCTTC	3 cut(s)	84, 198, 815
HpyCH4III	ACNGT	2 cut(s)	888, 931
HpyCH4IV	ACGT	3 cut(s)	131, 217, 502
HpyCH4V	TGCA	7 cut(s)	16, 284, 290, 500, 542, 677, 869
HpyF10VI	GCNNNNNNNGC	8 cut(s)	233, 437, 470, 506, 539, 674, 683, 737
HpyF3I	CTNAG	3 cut(s)	315, 444, 669
HpySE526I	ACGT	3 cut(s)	131, 217, 502
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	40, 112
HspAI	GCGC	3 cut(s)	431, 666, 1010
Ksp22I	TGATCA	1 cut(s)	565
KspAI	GTTAAC	1 cut(s)	804
Kzo9I	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
LguI	GCTCTTC	2 cut(s)	480, 853
LmnI	GCTCC	4 cut(s)	155, 190, 328, 985
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	357, 825
MaeI	CTAG	2 cut(s)	264, 839
MaeII	ACGT	3 cut(s)	131, 217, 502
MaeIII	GTNAC	1 cut(s)	931
MalI	GATC	7 cut(s)	312, 495, 567, 640, 816, 864, 912
MboI	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
MflI	RGATCY	3 cut(s)	310, 493, 910
MhlI	GDGCHC	5 cut(s)	160, 229, 238, 733, 848
MlsI	TGGCCA	2 cut(s)	5, 798
MluCI	AATT	5 cut(s)	11, 467, 544, 975, 995
MluNI	TGGCCA	2 cut(s)	5, 798
Mox20I	TGGCCA	2 cut(s)	5, 798
MscI	TGGCCA	2 cut(s)	5, 798
MseI	TTAA	2 cut(s)	803, 990
Msp20I	TGGCCA	2 cut(s)	5, 798
MspI	CCGG	2 cut(s)	256, 921
MspR9I	CCNGG	2 cut(s)	767, 921
MvaI	CCWGG	1 cut(s)	767
MvnI	CGCG	2 cut(s)	128, 666
MwoI	GCNNNNNNNGC	8 cut(s)	233, 437, 470, 506, 539, 674, 683, 737
NciI	CCSGG	1 cut(s)	921
NcoI	CCATGG	2 cut(s)	36, 108
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
NlaIII	CATG	2 cut(s)	40, 112
NlaIV	GGNNCC	1 cut(s)	235
NruI	TCGCGA	1 cut(s)	128
NsbI	TGCGCA	1 cut(s)	432
PciSI	GCTCTTC	2 cut(s)	480, 853
PfeI	GAWTC	3 cut(s)	625, 776, 968
PinAI	ACCGGT	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	430
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	503
Psp124BI	GAGCTC	2 cut(s)	160, 848
Psp6I	CCWGG	1 cut(s)	765
PspCI	CACGTG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	765
PspN4I	GGNNCC	1 cut(s)	235
PsuI	RGATCY	3 cut(s)	310, 493, 910
RruI	TCGCGA	1 cut(s)	128
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SacI	GAGCTC	2 cut(s)	160, 848
SapI	GCTCTTC	2 cut(s)	480, 853
SaqAI	TTAA	2 cut(s)	803, 990
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
ScrFI	CCNGG	2 cut(s)	767, 921
SduI	GDGCHC	5 cut(s)	160, 229, 238, 733, 848
SfaNI	GCATC	2 cut(s)	357, 825
SfcI	CTRYAG	1 cut(s)	807
Sse9I	AATT	5 cut(s)	11, 467, 544, 975, 995
SsiI	CCGC	5 cut(s)	51, 71, 147, 533, 738
SspMI	CTAG	2 cut(s)	264, 839
SstI	GAGCTC	2 cut(s)	160, 848
StyD4I	CCNGG	2 cut(s)	765, 919
StyI	CCWWGG	2 cut(s)	36, 108
TaaI	ACNGT	2 cut(s)	888, 931
TaiI	ACGT	3 cut(s)	134, 220, 505
TaqI	TCGA	2 cut(s)	457, 641
TasI	AATT	5 cut(s)	11, 467, 544, 975, 995
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	3 cut(s)	625, 776, 968
Tru1I	TTAA	2 cut(s)	803, 990
Tru9I	TTAA	2 cut(s)	803, 990
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	257, 362, 1008
TspGWI	ACGGA	1 cut(s)	1018
XapI	RAATTY	1 cut(s)	544
XbaI	TCTAGA	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	2 cut(s)	264, 839
ZraI	GACGTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.