Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Forward (+)

16580133 .. 16581890

Gene Structure 1758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCCATAAAATCGCAGATATTTACAGGACTGGCAATGGCGTCAACTCCCGCGTCATCGTTCCAGGCCTCTTCTTCGTCCCCCACCACTCTCTCTATGGTCAGGAGACCTCTCACCACCTCCTTCTTTAACGCCGGAGTGGGAGCTCTGAAAGTAGAAATGATTAGGGTCGCTCCTTCGTATAAGAGACATAACTTTAGACAACGTGGTGGTGCTCTTGGTGCCTGTATGAACCTTTTTGGCCGGACTGCTAGAGTTTTGAAGTCATATGTAAATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAATCGTGGAGCAAGCAGTTCTTGAAATGAATGATGACTTGGTGAAGATGCGTCAATCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

124

Amino Acids

13.42

Weight (kDa)

10.2

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	78 - 122	2.5e-08	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	1 cut(s)	53
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	2 cut(s)	3, 241
AcyI	GRCGYC	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	262, 296, 332
AjnI	CCWGG	1 cut(s)	63
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	2 cut(s)	148, 217
Alw26I	GTCTC	2 cut(s)	100, 181
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	3 cut(s)	3, 66, 241
AsuHPI	GGTGA	2 cut(s)	106, 361
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	148, 217
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	2 cut(s)	100, 181
BfaI	CTAG	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	5, 68, 243
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	2 cut(s)	148, 217
BsiSI	CCGG	2 cut(s)	135, 244
BslFI	GGGAC	1 cut(s)	64
BsmAI	GTCTC	2 cut(s)	100, 181
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	5, 68, 243
Bso31I	GGTCTC	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	148, 217
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	3 cut(s)	5, 68, 243
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	76
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	2 cut(s)	100, 181
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	5, 68, 243
Cac8I	GCNNGC	1 cut(s)	321
CseI	GACGC	3 cut(s)	30, 42, 347
CviJI	RGCY	4 cut(s)	5, 68, 146, 243
CviKI_1	RGCY	4 cut(s)	5, 68, 146, 243
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	2 cut(s)	3, 241
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	148
FaiI	YATR	9 cut(s)	8, 98, 183, 192, 230, 268, 270, 284, 370
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	1 cut(s)	64
FauI	CCCGC	1 cut(s)	58
FauNDI	CATATG	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	252
HaeIII	GGCC	3 cut(s)	5, 68, 243
HapII	CCGG	2 cut(s)	135, 244
HgaI	GACGC	3 cut(s)	30, 42, 347
Hin1I	GRCGYC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HpaII	CCGG	2 cut(s)	135, 244
HphI	GGTGA	2 cut(s)	106, 361
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	3 cut(s)	103, 302, 329
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	2 cut(s)	133, 186
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	205
Hsp92I	GRCGYC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	3 cut(s)	143, 178, 316
LpnPI	CCDG	9 cut(s)	12, 17, 50, 77, 88, 148, 238, 257, 315
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	205
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	4 cut(s)	63, 66, 308, 364
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	148, 217
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	79, 120, 130
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	129
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	135, 244
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	298
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	2 cut(s)	148, 217
SetI	ASST	5 cut(s)	112, 122, 148, 208, 237
SfaNI	GCATC	1 cut(s)	345
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	252
SstI	GAGCTC	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	63
TaiI	ACGT	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	245, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.