Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

54303632 .. 54311689

Gene Structure 8058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCCACAAAATCGCAGATATTGACAGGATTGACAATGGCGTCAACAACGCCCGCGTCTTCATTCCAAGCCTCTTCTTCGTCTTCATCATCCTCCACCAGTCTCTCTATGGTCAGGAGACCTCTCGCGACCTCCTTCTTTAATGGTGGAGTGGGAGCTTTGAGAGTTGAAGTGATTAGGGTCGCTCCTTCCTATAAGAGACATAACTTTAGACAACGTGGAGGTGCTCTTGGTGCCCGTATGAACCTTTTTGATCGGTTTGCTAGAGTTTTGAAGTCATATGCAAATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAATCTTGGAGCAAGCAGTCCTTGAAATGAATGATGACTTGACGAAGATGCGTCAGGCCACAGCACAAGTATTGGCATCTCAAAAACGGTTGGAAAATAAGTATAAAGCTGCGCAACAAGCTTCTGAGGAATGGTACCGAAAAGCACAATTAGCTCTTAAAAAAGGAGAGGAGGATCTTGCACGTGAAGCTCTGAAGAGGCGTAAATCTTTTGCGGATAATGCTAATTCTTTGAAAACTCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTCTCTAATACAAAGCTTTTAGAGAACAAGATACAAGAAGCAAGGTCGAAAAAAGATACCCTCAAAGCACGCGCTCAGTCTGCAAAGACTGCTAATAAAGTGAGTGAGATGGTGGGGAATGTTAATACAAGTAGTGCCCTTTCCGCTTTTGAAAAGATGGAAGAGAAAGTCTTAGCACTGGAATCCCAAGCAGAAGCTCTTGGCCAGTTAACTACAGATGATCTAGAAGGAAAGTTTGCGATGCTAGAGAGCTCTTCTGTTGACGATGATCTTGCAAACTTGAAGAAAGAACTGTCTGGTAGTTCAAAGAAAGGAGAGCTTCCAGCTGGAAGAACTGTTGTTGCTCCATCGAACAAGGCATATCCATTTAAGGATTCTGAGATTGAGATGGAGCTTAATGAATTAAGACGGAAAGCCAAGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

340

Amino Acids

37.4

Weight (kDa)

9.55

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	82 - 295	4.1e-53	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
Acc16I	TGCGCA	1 cut(s)	432
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	2 cut(s)	233, 453
AccII	CGCG	3 cut(s)	56, 128, 666
AciI	CCGC	3 cut(s)	54, 533, 738
AclWI	GGATC	2 cut(s)	305, 501
AcoI	YGGCCR	2 cut(s)	3, 796
AcuI	CTGAAG	1 cut(s)	533
AcvI	CACGTG	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	455
AgsI	TTSAA	8 cut(s)	170, 274, 308, 344, 553, 746, 877, 900
Alw21I	GWGCWC	2 cut(s)	229, 848
Alw26I	GTCTC	4 cut(s)	107, 112, 193, 601
AlwI	GGATC	2 cut(s)	305, 501
AoxI	GGCC	3 cut(s)	3, 375, 796
ApeKI	GCWGC	1 cut(s)	428
Asp718I	GGTACC	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	433, 668
BaeGI	GKGCMC	2 cut(s)	238, 733
BalI	TGGCCA	2 cut(s)	5, 798
BanI	GGYRCC	2 cut(s)	233, 453
BanII	GRGCYC	1 cut(s)	848
BbrPI	CACGTG	1 cut(s)	503
BbsI	GAAGAC	2 cut(s)	51, 75
Bbv12I	GWGCWC	2 cut(s)	229, 848
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	4 cut(s)	697, 745, 949, 976
BcgI	CGANNNNNNTGC	2 cut(s)	848, 882
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	4 cut(s)	107, 112, 193, 601
BfaI	CTAG	3 cut(s)	264, 818, 839
BfmI	CTRYAG	1 cut(s)	807
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
BmiI	GGNNCC	2 cut(s)	235, 455
BmsI	GCATC	3 cut(s)	357, 404, 825
BpiI	GAAGAC	2 cut(s)	51, 75
BsaAI	YACGTR	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	1011
Bse1I	ACTGG	3 cut(s)	99, 777, 799
BseDI	CCNNGG	1 cut(s)	1011
BseGI	GGATG	1 cut(s)	89
BseMII	CTCAG	4 cut(s)	306, 435, 683, 963
BseNI	ACTGG	3 cut(s)	99, 777, 799
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	2 cut(s)	238, 733
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	3 cut(s)	56, 128, 666
BshFI	GGCC	3 cut(s)	5, 377, 798
BshNI	GGYRCC	2 cut(s)	233, 453
BsiHKAI	GWGCWC	2 cut(s)	229, 848
BsmAI	GTCTC	4 cut(s)	107, 112, 193, 601
BsnI	GGCC	3 cut(s)	5, 377, 798
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	4 cut(s)	229, 238, 733, 848
Bsp143I	GATC	6 cut(s)	253, 310, 493, 565, 814, 862
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	3 cut(s)	54, 533, 738
BspANI	GGCC	3 cut(s)	5, 377, 798
BspCNI	CTCAG	4 cut(s)	307, 436, 682, 964
BspFNI	CGCG	3 cut(s)	56, 128, 666
BspLI	GGNNCC	2 cut(s)	235, 455
BspPI	GGATC	2 cut(s)	305, 501
BspQI	GCTCTTC	1 cut(s)	853
BspT107I	GGYRCC	2 cut(s)	233, 453
BspTNI	GGTCTC	1 cut(s)	112
BsrI	ACTGG	3 cut(s)	99, 777, 799
BssECI	CCNNGG	1 cut(s)	1011
BssMI	GATC	6 cut(s)	253, 310, 493, 565, 814, 862
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	1011
Bst4CI	ACNGT	3 cut(s)	408, 888, 931
Bst6I	CTCTTC	4 cut(s)	79, 509, 750, 853
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	54, 333, 664
BstDEI	CTNAG	5 cut(s)	315, 444, 669, 766, 972
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	3 cut(s)	56, 128, 666
BstHHI	GCGC	2 cut(s)	433, 668
BstKTI	GATC	6 cut(s)	256, 313, 496, 568, 817, 865
BstMAI	GTCTC	4 cut(s)	107, 112, 193, 601
BstMBI	GATC	6 cut(s)	253, 310, 493, 565, 814, 862
BstMWI	GCNNNNNNNGC	8 cut(s)	233, 437, 470, 506, 539, 674, 683, 737
BstSFI	CTRYAG	1 cut(s)	807
BstSLI	GKGCMC	2 cut(s)	238, 733
BstUI	CGCG	3 cut(s)	56, 128, 666
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	2 cut(s)	51, 75
BstX2I	RGATCY	2 cut(s)	310, 493
BstYI	RGATCY	2 cut(s)	310, 493
BsuRI	GGCC	3 cut(s)	5, 377, 798
BtgZI	GCGATG	1 cut(s)	848
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	770
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	3 cut(s)	54, 333, 664
CfoI	GCGC	2 cut(s)	433, 668
CseI	GACGC	3 cut(s)	30, 45, 359
Csp6I	GTAC	1 cut(s)	454
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	5 cut(s)	315, 444, 669, 766, 972
DpnI	GATC	6 cut(s)	255, 312, 495, 567, 816, 864
DpnII	GATC	6 cut(s)	253, 310, 493, 565, 814, 862
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	2 cut(s)	3, 796
Eam1104I	CTCTTC	4 cut(s)	79, 509, 750, 853
EarI	CTCTTC	4 cut(s)	79, 509, 750, 853
Ecl136II	GAGCTC	1 cut(s)	846
Eco130I	CCWWGG	1 cut(s)	1011
Eco24I	GRGCYC	1 cut(s)	848
Eco31I	GGTCTC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	846
Eco57I	CTGAAG	1 cut(s)	533
Eco72I	CACGTG	1 cut(s)	503
EcoICRI	GAGCTC	1 cut(s)	846
EcoT14I	CCWWGG	1 cut(s)	1011
EcoT38I	GRGCYC	1 cut(s)	848
ErhI	CCWWGG	1 cut(s)	1011
FaiI	YATR	9 cut(s)	110, 195, 204, 242, 280, 282, 296, 423, 955
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 897, 929
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	848
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	3 cut(s)	264, 818, 839
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	2 cut(s)	432, 667
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	5, 377, 798
HgaI	GACGC	3 cut(s)	30, 45, 359
HhaI	GCGC	2 cut(s)	433, 668
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	2 cut(s)	431, 666
HinP1I	GCGC	2 cut(s)	431, 666
HincII	GTYRAC	3 cut(s)	45, 804, 856
HindII	GTYRAC	3 cut(s)	45, 804, 856
HindIII	AAGCTT	2 cut(s)	438, 608
HinfI	GANTC	2 cut(s)	776, 968
HpaI	GTTAAC	1 cut(s)	804
Hpy166II	GTNNAC	3 cut(s)	45, 804, 856
Hpy188I	TCNGA	3 cut(s)	445, 513, 973
Hpy188III	TCNNGA	4 cut(s)	115, 127, 314, 818
Hpy8I	GTNNAC	3 cut(s)	45, 804, 856
HpyAV	CCTTC	3 cut(s)	145, 198, 815
HpyCH4III	ACNGT	3 cut(s)	408, 888, 931
HpyCH4IV	ACGT	2 cut(s)	217, 502
HpyCH4V	TGCA	5 cut(s)	284, 290, 500, 677, 869
HpyF10VI	GCNNNNNNNGC	8 cut(s)	233, 437, 470, 506, 539, 674, 683, 737
HpyF3I	CTNAG	5 cut(s)	315, 444, 669, 766, 972
HpySE526I	ACGT	2 cut(s)	217, 502
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	2 cut(s)	431, 666
KpnI	GGTACC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	565
KspAI	GTTAAC	1 cut(s)	804
Kzo9I	GATC	6 cut(s)	253, 310, 493, 565, 814, 862
LguI	GCTCTTC	1 cut(s)	853
LmnI	GCTCC	5 cut(s)	155, 190, 328, 943, 985
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	3 cut(s)	357, 404, 825
MaeI	CTAG	3 cut(s)	264, 818, 839
MaeII	ACGT	2 cut(s)	217, 502
MalI	GATC	6 cut(s)	255, 312, 495, 567, 816, 864
MboI	GATC	6 cut(s)	253, 310, 493, 565, 814, 862
MflI	RGATCY	2 cut(s)	310, 493
MhlI	GDGCHC	4 cut(s)	229, 238, 733, 848
MlsI	TGGCCA	2 cut(s)	5, 798
MluCI	AATT	3 cut(s)	467, 544, 995
MluNI	TGGCCA	2 cut(s)	5, 798
MmeI	TCCRAC	1 cut(s)	390
Mox20I	TGGCCA	2 cut(s)	5, 798
MscI	TGGCCA	2 cut(s)	5, 798
MseI	TTAA	7 cut(s)	141, 477, 717, 803, 963, 990, 998
Msp20I	TGGCCA	2 cut(s)	5, 798
MspA1I	CMGCKG	1 cut(s)	920
MvnI	CGCG	3 cut(s)	56, 128, 666
MwoI	GCNNNNNNNGC	8 cut(s)	233, 437, 470, 506, 539, 674, 683, 737
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	6 cut(s)	253, 310, 493, 565, 814, 862
NlaIV	GGNNCC	2 cut(s)	235, 455
NruI	TCGCGA	1 cut(s)	128
NsbI	TGCGCA	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	853
PfeI	GAWTC	2 cut(s)	776, 968
PkrI	GCNGC	1 cut(s)	430
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	503
Psp124BI	GAGCTC	1 cut(s)	848
PspCI	CACGTG	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	235, 455
PsuI	RGATCY	2 cut(s)	310, 493
PvuII	CAGCTG	1 cut(s)	920
RruI	TCGCGA	1 cut(s)	128
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SacI	GAGCTC	1 cut(s)	848
SapI	GCTCTTC	1 cut(s)	853
SaqAI	TTAA	7 cut(s)	141, 477, 717, 803, 963, 990, 998
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	6 cut(s)	253, 310, 493, 565, 814, 862
SduI	GDGCHC	4 cut(s)	229, 238, 733, 848
SfaNI	GCATC	3 cut(s)	357, 404, 825
SfcI	CTRYAG	1 cut(s)	807
Sse9I	AATT	3 cut(s)	467, 544, 995
SsiI	CCGC	3 cut(s)	54, 533, 738
SspMI	CTAG	3 cut(s)	264, 818, 839
SstI	GAGCTC	1 cut(s)	848
StyI	CCWWGG	1 cut(s)	1011
TaaI	ACNGT	3 cut(s)	408, 888, 931
TaiI	ACGT	2 cut(s)	220, 505
TaqI	TCGA	2 cut(s)	641, 944
TasI	AATT	3 cut(s)	467, 544, 995
TfiI	GAWTC	2 cut(s)	776, 968
Tru1I	TTAA	7 cut(s)	141, 477, 717, 803, 963, 990, 998
Tru9I	TTAA	7 cut(s)	141, 477, 717, 803, 963, 990, 998
TscAI	CASTG	1 cut(s)	777
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	5 cut(s)	51, 75, 257, 362, 1008
TspGWI	ACGGA	1 cut(s)	1018
TspRI	CASTG	1 cut(s)	777
XbaI	TCTAGA	1 cut(s)	817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	3 cut(s)	264, 818, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.