Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Forward (+)

46839426 .. 46846561

Gene Structure 7136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG290800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCCACCAAATTGCAGATATTTACAGGATTGACCATGGCTTCAACTCCCGCCTCTTCGTTCCAATCCCCGCCTTCTTCTTCCTCATCCTCCACCACCCTCTCCATGGTCAGGAGACCTCTCACGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTGAAGTCATTAGGGTTGCTCCTTCCAATAAGCGACATCATTCAAGACAACGTGGAGGTGCTCTCGGTACCCGTATGAACCTTTTTGACCGGTTTTCTAGAGTTATCAAGTCGTATGCAAATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAATCTTGGAGCAAGCAGTTCTTGAAATGAATGATGACTTGACAAAGATGCGTCAGGCCACAGCACAGGTATTGGCTTCTCAAAAACGATTGGAAAATAAGTACAAAGCTGCGCAACAAGCGTCTGAGGACTGGTATCGAAAAGCACAATTAGCTCTTCAGAAAGGAGAGGAGGATCTTGCACGTGAAGCTCTGAAGAGGCGTAAATCTTTTGCGGATAATGCTAATTCTTTGAGAACGCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTGTCTAATACAAAGCTTTTAGAGAGCAAGATACAAGAAGCAAGATCGAAAAAAGATACCCTCAAAGCACGCGCTCAGTCTGCAAAGACTGCTACTAAAGTGAGTGAGATGGTGGGGAATGTCAATACAAGTAGTGCCCTTTCCGCTTTTGACAAGATGGAGGAGAAAGTCCTGGCAATGGAATCCCAAGCAGAAGCTCTTGGCCAGTTAACTACAGATGATCTGGAAGGAAAGTTTGCGATGCTAGAGAGCTCTTCTGTTGATGATGATCTTGCAAGCTTGAAGAAAGAACTGTCTGGTAGTTCAAAGAAAGGAGATCTTCCACCCGGAAGAACTGTTACTCCCAGTTCAAACAAGGCATATCCATTCAAGGATTCTGAAATTGAAATGGAGCTTAATGAATTGAGACGGAAAGCGCAGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

339

Amino Acids

37.36

Weight (kDa)

9.47

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	81 - 294	4.7e-53	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	131
Acc16I	TGCGCA	1 cut(s)	429
Acc65I	GGTACC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	230
AccII	CGCG	1 cut(s)	663
AciI	CCGC	5 cut(s)	51, 71, 144, 530, 735
AclWI	GGATC	2 cut(s)	302, 498
AcoI	YGGCCR	2 cut(s)	3, 793
AcuI	CTGAAG	2 cut(s)	458, 530
AcvI	CACGTG	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	232, 419
AfiI	CCNNNNNNNGG	3 cut(s)	106, 111, 769
AgeI	ACCGGT	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	762
AloI	GAACNNNNNNTCC	2 cut(s)	916, 948
AluBI	AGCT	9 cut(s)	155, 425, 470, 506, 607, 788, 843, 870, 985
AluI	AGCT	9 cut(s)	155, 425, 470, 506, 607, 788, 843, 870, 985
Alw21I	GWGCWC	3 cut(s)	157, 226, 845
Alw26I	GTCTC	2 cut(s)	109, 991
AlwI	GGATC	2 cut(s)	302, 498
AoxI	GGCC	3 cut(s)	3, 372, 793
ApeKI	GCWGC	1 cut(s)	425
AsiGI	ACCGGT	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	230
AspLEI	GCGC	3 cut(s)	430, 665, 1009
AsuC2I	CCSGG	1 cut(s)	918
BaeGI	GKGCMC	1 cut(s)	730
BalI	TGGCCA	2 cut(s)	5, 795
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	2 cut(s)	157, 845
BarI	GAAGNNNNNNTAC	2 cut(s)	913, 945
BbrPI	CACGTG	1 cut(s)	500
Bbv12I	GWGCWC	3 cut(s)	157, 226, 845
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	2 cut(s)	694, 742
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	764
BclI	TGATCA	1 cut(s)	562
BcnI	CCSGG	1 cut(s)	918
BcoDI	GTCTC	2 cut(s)	109, 991
BfaI	CTAG	2 cut(s)	261, 836
BfmI	CTRYAG	1 cut(s)	804
BglII	AGATCT	1 cut(s)	907
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	2 cut(s)	764, 918
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	764, 918
BmrI	ACTGGG	1 cut(s)	930
BmsI	GCATC	2 cut(s)	354, 822
BmuI	ACTGGG	1 cut(s)	930
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpuMI	CCSGG	1 cut(s)	918
BsaAI	YACGTR	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	858
BsaHI	GRCGYC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	36, 105
BsaWI	WCCGGW	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 111, 769
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	3 cut(s)	452, 796, 936
Bse3DI	GCAATG	1 cut(s)	774
Bse8I	GATNNNNATC	1 cut(s)	858
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	2 cut(s)	36, 105
BseGI	GGATG	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	858
BseLI	CCNNNNNNNGG	3 cut(s)	106, 111, 769
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	3 cut(s)	303, 432, 680
BseNI	ACTGG	3 cut(s)	452, 796, 936
BseRI	GAGGAG	2 cut(s)	500, 767
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	663
BshFI	GGCC	3 cut(s)	5, 374, 795
BshNI	GGYRCC	1 cut(s)	230
BshTI	ACCGGT	1 cut(s)	252
BsiHKAI	GWGCWC	3 cut(s)	157, 226, 845
BsiSI	CCGG	2 cut(s)	253, 918
BslI	CCNNNNNNNGG	3 cut(s)	106, 111, 769
BsmAI	GTCTC	2 cut(s)	109, 991
BsmBI	CGTCTC	1 cut(s)	991
BsnI	GGCC	3 cut(s)	5, 374, 795
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	4 cut(s)	157, 226, 730, 845
Bsp143I	GATC	7 cut(s)	307, 490, 562, 635, 811, 859, 907
Bsp19I	CCATGG	2 cut(s)	36, 105
BspACI	CCGC	5 cut(s)	51, 71, 144, 530, 735
BspANI	GGCC	3 cut(s)	5, 374, 795
BspCNI	CTCAG	3 cut(s)	304, 433, 679
BspFNI	CGCG	1 cut(s)	663
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	302, 498
BspQI	GCTCTTC	2 cut(s)	477, 850
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	774
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	3 cut(s)	452, 796, 936
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	36, 105
BssMI	GATC	7 cut(s)	307, 490, 562, 635, 811, 859, 907
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	2 cut(s)	36, 105
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	2 cut(s)	885, 928
Bst6I	CTCTTC	4 cut(s)	61, 477, 506, 850
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	330, 661, 868
BstDEI	CTNAG	3 cut(s)	312, 441, 666
BstDSI	CCRYGG	2 cut(s)	36, 105
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	663
BstHHI	GCGC	3 cut(s)	430, 665, 1009
BstKTI	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
BstMAI	GTCTC	2 cut(s)	109, 991
BstMBI	GATC	7 cut(s)	307, 490, 562, 635, 811, 859, 907
BstMWI	GCNNNNNNNGC	7 cut(s)	434, 467, 503, 536, 671, 680, 734
BstNI	CCWGG	1 cut(s)	764
BstSCI	CCNGG	2 cut(s)	762, 916
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	730
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	1 cut(s)	412
BstX2I	RGATCY	3 cut(s)	307, 490, 907
BstYI	RGATCY	3 cut(s)	307, 490, 907
BsuRI	GGCC	3 cut(s)	5, 374, 795
BtgI	CCRYGG	2 cut(s)	36, 105
BtgZI	GCGATG	1 cut(s)	845
BtsCI	GGATG	1 cut(s)	86
Cac8I	GCNNGC	3 cut(s)	330, 661, 868
CfoI	GCGC	3 cut(s)	430, 665, 1009
Cfr10I	RCCGGY	1 cut(s)	252
CseI	GACGC	2 cut(s)	356, 426
Csp6I	GTAC	2 cut(s)	231, 418
CspAI	ACCGGT	1 cut(s)	252
CviAII	CATG	2 cut(s)	37, 106
CviQI	GTAC	2 cut(s)	231, 418
DdeI	CTNAG	3 cut(s)	312, 441, 666
DpnI	GATC	7 cut(s)	309, 492, 564, 637, 813, 861, 909
DpnII	GATC	7 cut(s)	307, 490, 562, 635, 811, 859, 907
EaeI	YGGCCR	2 cut(s)	3, 793
Eam1104I	CTCTTC	4 cut(s)	61, 477, 506, 850
EarI	CTCTTC	4 cut(s)	61, 477, 506, 850
EciI	GGCGGA	1 cut(s)	159
Ecl136II	GAGCTC	2 cut(s)	155, 843
Eco130I	CCWWGG	2 cut(s)	36, 105
Eco24I	GRGCYC	2 cut(s)	157, 845
Eco31I	GGTCTC	1 cut(s)	109
Eco53kI	GAGCTC	2 cut(s)	155, 843
Eco57I	CTGAAG	2 cut(s)	458, 530
Eco72I	CACGTG	1 cut(s)	500
EcoICRI	GAGCTC	2 cut(s)	155, 843
EcoRII	CCWGG	1 cut(s)	762
EcoT14I	CCWWGG	2 cut(s)	36, 105
EcoT38I	GRGCYC	2 cut(s)	157, 845
ErhI	CCWWGG	2 cut(s)	36, 105
Esp3I	CGTCTC	1 cut(s)	991
FaeI	CATG	2 cut(s)	40, 109
FaiI	YATR	6 cut(s)	38, 107, 239, 279, 293, 952
FalI	AAGNNNNNCTT	4 cut(s)	321, 353, 894, 926
FatI	CATG	2 cut(s)	36, 105
FauI	CCCGC	2 cut(s)	58, 78
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	2 cut(s)	157, 845
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	2 cut(s)	261, 836
FspI	TGCGCA	1 cut(s)	429
GlaI	GCGC	3 cut(s)	429, 664, 1008
GluI	GCNGC	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	5, 374, 795
HapII	CCGG	2 cut(s)	253, 918
HgaI	GACGC	2 cut(s)	356, 426
HhaI	GCGC	3 cut(s)	430, 665, 1009
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	40, 109
Hin6I	GCGC	3 cut(s)	428, 663, 1007
HinP1I	GCGC	3 cut(s)	428, 663, 1007
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	2 cut(s)	605, 868
HinfI	GANTC	2 cut(s)	773, 965
HpaI	GTTAAC	1 cut(s)	801
HpaII	CCGG	2 cut(s)	253, 918
Hpy166II	GTNNAC	1 cut(s)	801
Hpy188I	TCNGA	4 cut(s)	442, 477, 510, 970
Hpy188III	TCNNGA	7 cut(s)	112, 124, 207, 261, 311, 338, 815
Hpy8I	GTNNAC	1 cut(s)	801
Hpy99I	CGWCG	2 cut(s)	130, 133
HpyAV	CCTTC	3 cut(s)	84, 195, 812
HpyCH4III	ACNGT	2 cut(s)	885, 928
HpyCH4IV	ACGT	3 cut(s)	128, 214, 499
HpyCH4V	TGCA	6 cut(s)	16, 281, 287, 497, 674, 866
HpyF10VI	GCNNNNNNNGC	7 cut(s)	434, 467, 503, 536, 671, 680, 734
HpyF3I	CTNAG	3 cut(s)	312, 441, 666
HpySE526I	ACGT	3 cut(s)	128, 214, 499
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	40, 109
HspAI	GCGC	3 cut(s)	428, 663, 1007
KpnI	GGTACC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	562
KspAI	GTTAAC	1 cut(s)	801
Kzo9I	GATC	7 cut(s)	307, 490, 562, 635, 811, 859, 907
LguI	GCTCTTC	2 cut(s)	477, 850
LmnI	GCTCC	4 cut(s)	152, 187, 325, 982
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	2 cut(s)	354, 822
MaeI	CTAG	2 cut(s)	261, 836
MaeII	ACGT	3 cut(s)	128, 214, 499
MaeIII	GTNAC	1 cut(s)	928
MalI	GATC	7 cut(s)	309, 492, 564, 637, 813, 861, 909
MboI	GATC	7 cut(s)	307, 490, 562, 635, 811, 859, 907
MflI	RGATCY	3 cut(s)	307, 490, 907
MhlI	GDGCHC	4 cut(s)	157, 226, 730, 845
MlsI	TGGCCA	2 cut(s)	5, 795
MluCI	AATT	5 cut(s)	11, 464, 541, 972, 992
MluNI	TGGCCA	2 cut(s)	5, 795
Mox20I	TGGCCA	2 cut(s)	5, 795
MscI	TGGCCA	2 cut(s)	5, 795
MseI	TTAA	2 cut(s)	800, 987
Msp20I	TGGCCA	2 cut(s)	5, 795
MspI	CCGG	2 cut(s)	253, 918
MspR9I	CCNGG	2 cut(s)	764, 918
MvaI	CCWGG	1 cut(s)	764
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	7 cut(s)	434, 467, 503, 536, 671, 680, 734
NciI	CCSGG	1 cut(s)	918
NcoI	CCATGG	2 cut(s)	36, 105
NdeII	GATC	7 cut(s)	307, 490, 562, 635, 811, 859, 907
NlaIII	CATG	2 cut(s)	40, 109
NlaIV	GGNNCC	1 cut(s)	232
NsbI	TGCGCA	1 cut(s)	429
PciSI	GCTCTTC	2 cut(s)	477, 850
PfeI	GAWTC	2 cut(s)	773, 965
PinAI	ACCGGT	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	427
PmaCI	CACGTG	1 cut(s)	500
PmlI	CACGTG	1 cut(s)	500
Ppu21I	YACGTR	1 cut(s)	500
Psp124BI	GAGCTC	2 cut(s)	157, 845
Psp6I	CCWGG	1 cut(s)	762
PspCI	CACGTG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	1 cut(s)	232
PsuI	RGATCY	3 cut(s)	307, 490, 907
RsaI	GTAC	2 cut(s)	232, 419
RsaNI	GTAC	2 cut(s)	231, 418
SacI	GAGCTC	2 cut(s)	157, 845
SapI	GCTCTTC	2 cut(s)	477, 850
SaqAI	TTAA	2 cut(s)	800, 987
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	7 cut(s)	307, 490, 562, 635, 811, 859, 907
ScrFI	CCNGG	2 cut(s)	764, 918
SduI	GDGCHC	4 cut(s)	157, 226, 730, 845
SfaNI	GCATC	2 cut(s)	354, 822
SfcI	CTRYAG	1 cut(s)	804
Sse9I	AATT	5 cut(s)	11, 464, 541, 972, 992
SsiI	CCGC	5 cut(s)	51, 71, 144, 530, 735
SspMI	CTAG	2 cut(s)	261, 836
SstI	GAGCTC	2 cut(s)	157, 845
StyD4I	CCNGG	2 cut(s)	762, 916
StyI	CCWWGG	2 cut(s)	36, 105
TaaI	ACNGT	2 cut(s)	885, 928
TaiI	ACGT	3 cut(s)	131, 217, 502
TaqI	TCGA	2 cut(s)	454, 638
TasI	AATT	5 cut(s)	11, 464, 541, 972, 992
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	2 cut(s)	773, 965
Tru1I	TTAA	2 cut(s)	800, 987
Tru9I	TTAA	2 cut(s)	800, 987
TseI	GCWGC	1 cut(s)	425
TspDTI	ATGAA	3 cut(s)	254, 359, 1005
TspGWI	ACGGA	1 cut(s)	1015
XbaI	TCTAGA	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	2 cut(s)	261, 836
ZraI	GACGTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.