Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

23261500 .. 23262480

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G018030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCACGAAATCTCAGATTTTTATAGGGATGTCCACGGCATCAATGCCCTCTTCTTCTTCATCCTCTACCACTCTCTCTATGATCAGGAGACCTCTCACGACGTCGTTCTATAACGGCGGAGTGGGAGCTATAAAACTTGAAACGATTAGGGTTGCTCCTTCCAATAAGCAAAATCAATTCAGACAACAGGGAACTGCTTTTGTTGCTCATATGAACCTTATCGACCGGTTTGCTATGGTCATCAAGTCATATGCAAATGCACTCATGTCTTCATTTGAAGATCCTGAGAAGATCTTGGAGCAAGCAGTTCTTGAAATGAACGATGACTTGATGAAGATGCGACAGGCCACAGCACAAGTATTGGCATCTCAAAAAAGGCTGGAAAACAAGTATGAAGCTGCGCAACAGGCTTCGGAGAACTGGTACCGAAAAGCACAACTAGCTGTTAAGCAAGGAGAGGAAGATTTAGCACGCGAAGCCCTCAAGAGGCGTAAATCTCTGGCGGATAATGCTAGTGCTTTGAGAACTCAACTTGATCAACAAAGAGGTGTTGTTGATAGTCTTTTGTCCAATACAAAGCTTTTAGAGAGCAAGATACAAGAGGCAATGTCGAAAAAGGATAACCTAAAAGCTCGGGCTCGGTCTGCAAAGATTGTTAGTGAAGTGAGCGAGATGGTGGGGAATGTTGATACGAGTAGTGCCCTTTCGGCCTTTGGAATGATGGAAGAGAAAGTGTTGGCAATGGAAGCTCTGGGCCAATTAACTACGGATGATCTGGAAGGAAAGTTCGCGGTGCTAGAGAGCTCTTCTTCTGTTGAAGATGACCTTGCAAACTTGAAGAAACAAGTGTCTGCAGGTAGTTCGAAGAAAGGAGAGCTTCCGCCTGGAAGAACAGTTGCCGCTTCAAACAAGACATTTCTATTAAAGGATTCTGAGATTGAGATGGAGCTTAATGAATTGAGACGGAAAGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

326

Amino Acids

35.85

Weight (kDa)

9.03

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	74 - 283	3.1e-45	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	107
Acc16I	TGCGCA	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	848
Acc65I	GGTACC	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	426
AccII	CGCG	2 cut(s)	477, 794
AciI	CCGC	5 cut(s)	120, 506, 794, 884, 903
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	489
AgeI	ACCGGT	1 cut(s)	228
AgsI	TTSAA	6 cut(s)	143, 281, 317, 821, 841, 909
AjnI	CCWGG	1 cut(s)	886
AloI	GAACNNNNNNTCC	2 cut(s)	773, 805
AluBI	AGCT	9 cut(s)	131, 401, 446, 583, 635, 752, 807, 880, 952
AluI	AGCT	9 cut(s)	131, 401, 446, 583, 635, 752, 807, 880, 952
Alw21I	GWGCWC	1 cut(s)	809
Alw26I	GTCTC	2 cut(s)	85, 958
AlwI	GGATC	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	636
AoxI	GGCC	4 cut(s)	3, 348, 711, 757
ApeKI	GCWGC	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	228
Asp718I	GGTACC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	757
AsuII	TTCGAA	1 cut(s)	866
AvaI	CYCGRG	1 cut(s)	636
BaeGI	GKGCMC	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	426
BanII	GRGCYC	2 cut(s)	643, 809
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	809
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	3 cut(s)	670, 718, 940
BceAI	ACGGC	2 cut(s)	54, 133
BcgI	CGANNNNNNTGC	4 cut(s)	215, 249, 846, 880
BciT130I	CCWGG	1 cut(s)	888
BclI	TGATCA	2 cut(s)	84, 538
BcoDI	GTCTC	2 cut(s)	85, 958
BfaI	CTAG	3 cut(s)	443, 516, 800
BfmI	CTRYAG	1 cut(s)	855
BfuAI	ACCTGC	1 cut(s)	848
BglI	GCCNNNNNGGC	1 cut(s)	710
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	2 cut(s)	402, 903
BlsI	GCNGC	2 cut(s)	403, 904
Bme1390I	CCNGG	1 cut(s)	888
BmeT110I	CYCGRG	1 cut(s)	636
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	1 cut(s)	888
BmsI	GCATC	3 cut(s)	50, 330, 377
BpiI	GAAGAC	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	866
BpuEI	CTTGAG	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	2 cut(s)	615, 750
BseBI	CCWGG	1 cut(s)	888
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	3 cut(s)	36, 62, 778
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMI	GCAATG	2 cut(s)	615, 750
BseMII	CTCAG	3 cut(s)	29, 279, 927
BseNI	ACTGG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	1 cut(s)	388
Bsh1236I	CGCG	2 cut(s)	477, 794
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	4 cut(s)	5, 350, 713, 759
BshNI	GGYRCC	1 cut(s)	426
BshTI	ACCGGT	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	809
BsiHKCI	CYCGRG	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	2 cut(s)	85, 958
BsmBI	CGTCTC	1 cut(s)	958
BsnI	GGCC	4 cut(s)	5, 350, 713, 759
Bso31I	GGTCTC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	866
Bsp1286I	GDGCHC	3 cut(s)	643, 706, 809
Bsp143I	GATC	5 cut(s)	84, 283, 294, 538, 775
BspACI	CCGC	5 cut(s)	120, 506, 794, 884, 903
BspANI	GGCC	4 cut(s)	5, 350, 713, 759
BspCNI	CTCAG	3 cut(s)	28, 280, 928
BspFNI	CGCG	2 cut(s)	477, 794
BspLI	GGNNCC	1 cut(s)	428
BspMAI	CTGCAG	1 cut(s)	859
BspMI	ACCTGC	1 cut(s)	848
BspPI	GGATC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	814
BspT104I	TTCGAA	1 cut(s)	866
BspT107I	GGYRCC	1 cut(s)	426
BspTNI	GGTCTC	1 cut(s)	85
BsrDI	GCAATG	2 cut(s)	615, 750
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	84, 283, 294, 538, 775
BssNI	GRCGYC	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	1 cut(s)	898
Bst6I	CTCTTC	3 cut(s)	58, 723, 814
BstACI	GRCGYC	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	866
BstC8I	GCNNGC	2 cut(s)	306, 475
BstDEI	CTNAG	3 cut(s)	15, 288, 936
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	36, 62, 778
BstFNI	CGCG	2 cut(s)	477, 794
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	5 cut(s)	87, 286, 297, 541, 778
BstMAI	GTCTC	2 cut(s)	85, 958
BstMBI	GATC	5 cut(s)	84, 283, 294, 538, 775
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	8 cut(s)	206, 410, 443, 479, 512, 647, 710, 749
BstNI	CCWGG	1 cut(s)	888
BstSCI	CCNGG	1 cut(s)	886
BstSFI	CTRYAG	1 cut(s)	855
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	2 cut(s)	477, 794
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	2 cut(s)	283, 294
BstYI	RGATCY	2 cut(s)	283, 294
BsuRI	GGCC	4 cut(s)	5, 350, 713, 759
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	36, 62, 778
BveI	ACCTGC	1 cut(s)	848
Cac8I	GCNNGC	2 cut(s)	306, 475
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	757
Csp6I	GTAC	1 cut(s)	427
CspAI	ACCGGT	1 cut(s)	228
CviAII	CATG	1 cut(s)	268
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	3 cut(s)	15, 288, 936
DpnI	GATC	5 cut(s)	86, 285, 296, 540, 777
DpnII	GATC	5 cut(s)	84, 283, 294, 538, 775
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	58, 723, 814
EarI	CTCTTC	3 cut(s)	58, 723, 814
EciI	GGCGGA	3 cut(s)	135, 521, 873
Ecl136II	GAGCTC	1 cut(s)	807
Eco24I	GRGCYC	2 cut(s)	643, 809
Eco31I	GGTCTC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	807
EcoRII	CCWGG	1 cut(s)	886
EcoT38I	GRGCYC	2 cut(s)	643, 809
Esp3I	CGTCTC	1 cut(s)	958
FaeI	CATG	1 cut(s)	271
FalI	AAGNNNNNCTT	6 cut(s)	297, 329, 813, 845, 864, 896
FatI	CATG	1 cut(s)	267
FauNDI	CATATG	2 cut(s)	213, 253
FbaI	TGATCA	2 cut(s)	84, 538
Fnu4HI	GCNGC	2 cut(s)	402, 903
FokI	GGATG	3 cut(s)	43, 49, 785
FriOI	GRGCYC	2 cut(s)	643, 809
Fsp4HI	GCNGC	2 cut(s)	402, 903
FspBI	CTAG	3 cut(s)	443, 516, 800
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	2 cut(s)	402, 903
HaeIII	GGCC	4 cut(s)	5, 350, 713, 759
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	1 cut(s)	932
HpaII	CCGG	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	4 cut(s)	18, 185, 418, 937
Hpy188III	TCNNGA	6 cut(s)	88, 100, 287, 314, 487, 779
Hpy8I	GTNNAC	1 cut(s)	36
Hpy99I	CGWCG	2 cut(s)	106, 109
HpyAV	CCTTC	2 cut(s)	171, 776
HpyCH4III	ACNGT	1 cut(s)	898
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	5 cut(s)	257, 263, 650, 833, 857
HpyF10VI	GCNNNNNNNGC	8 cut(s)	206, 410, 443, 479, 512, 647, 710, 749
HpyF3I	CTNAG	3 cut(s)	15, 288, 936
HpySE526I	ACGT	1 cut(s)	104
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	404
KpnI	GGTACC	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	84, 538
Kzo9I	GATC	5 cut(s)	84, 283, 294, 538, 775
LguI	GCTCTTC	1 cut(s)	814
LmnI	GCTCC	4 cut(s)	128, 163, 301, 949
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	3 cut(s)	50, 330, 377
MaeI	CTAG	3 cut(s)	443, 516, 800
MaeII	ACGT	1 cut(s)	104
MalI	GATC	5 cut(s)	86, 285, 296, 540, 777
MboI	GATC	5 cut(s)	84, 283, 294, 538, 775
MflI	RGATCY	2 cut(s)	283, 294
MhlI	GDGCHC	3 cut(s)	643, 706, 809
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	179, 761, 959, 976
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	8 cut(s)	61, 76, 105, 454, 483, 494, 542, 598
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	450, 764, 926, 954, 979
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	888
MvaI	CCWGG	1 cut(s)	888
MvnI	CGCG	2 cut(s)	477, 794
MwoI	GCNNNNNNNGC	8 cut(s)	206, 410, 443, 479, 512, 647, 710, 749
NdeI	CATATG	2 cut(s)	213, 253
NdeII	GATC	5 cut(s)	84, 283, 294, 538, 775
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	428
NsbI	TGCGCA	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	866
PciSI	GCTCTTC	1 cut(s)	814
PfeI	GAWTC	1 cut(s)	932
PinAI	ACCGGT	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	403, 904
Psp124BI	GAGCTC	1 cut(s)	809
Psp6I	CCWGG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	757
PstI	CTGCAG	1 cut(s)	859
PsuI	RGATCY	2 cut(s)	283, 294
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SacI	GAGCTC	1 cut(s)	809
SapI	GCTCTTC	1 cut(s)	814
SaqAI	TTAA	5 cut(s)	450, 764, 926, 954, 979
SatI	GCNGC	2 cut(s)	402, 903
Sau3AI	GATC	5 cut(s)	84, 283, 294, 538, 775
Sau96I	GGNCC	1 cut(s)	757
ScrFI	CCNGG	1 cut(s)	888
SduI	GDGCHC	3 cut(s)	643, 706, 809
SfaNI	GCATC	3 cut(s)	50, 330, 377
SfcI	CTRYAG	1 cut(s)	855
SfuI	TTCGAA	1 cut(s)	866
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	4 cut(s)	179, 761, 959, 976
SsiI	CCGC	5 cut(s)	120, 506, 794, 884, 903
SspMI	CTAG	3 cut(s)	443, 516, 800
SstI	GAGCTC	1 cut(s)	809
StyD4I	CCNGG	1 cut(s)	886
TaaI	ACNGT	1 cut(s)	898
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	3 cut(s)	225, 614, 866
TaqII	GACCGA	1 cut(s)	633
TasI	AATT	4 cut(s)	179, 761, 959, 976
TauI	GCSGC	1 cut(s)	905
TfiI	GAWTC	1 cut(s)	932
Tru1I	TTAA	5 cut(s)	450, 764, 926, 954, 979
Tru9I	TTAA	5 cut(s)	450, 764, 926, 954, 979
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	7 cut(s)	51, 230, 264, 335, 350, 411, 972
TspGWI	ACGGA	1 cut(s)	785
XspI	CTAG	3 cut(s)	443, 516, 800
ZraI	GACGTC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.