Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Forward (+)

27892507 .. 27892880

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0176600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGTGGTCGTGGAATCACTGGGATGGCTGACGGAATCGACTATAATGCCCAAGAAGCACCGCGCCATCGCCGGCATCGGCATCATCATCACCGCCGCCGTCACTCTTTCTCCGGATCTGAAATCTAAGCCTCCGAGTAGTACCGAATCATTGAATCGGTGCTCTGCAAGCAATTCCGAATTTCAAAGGTTTTTGAGGTTGGTAAACTTTCAGAGGCTGAAGCGCGAAGCTTGGAAGAGCTTCGGGATTAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

85

Amino Acids

9.47

Weight (kDa)

10.37

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	63, 225
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	3 cut(s)	61, 93, 96
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	154, 185
AluBI	AGCT	2 cut(s)	230, 240
AluI	AGCT	2 cut(s)	230, 240
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	217
Aor13HI	TCCGGA	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	65, 225
AsuHPI	GGTGA	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	164
BccI	CCATC	2 cut(s)	18, 74
BceAI	ACGGC	1 cut(s)	83
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BfaI	CTAG	1 cut(s)	256
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	84, 90
BmuI	ACTGGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	112
BseGI	GGATG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	63, 225
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	72, 113
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	3 cut(s)	61, 93, 96
BspEI	TCCGGA	1 cut(s)	112
BspFNI	CGCG	2 cut(s)	63, 225
BspPI	GGATC	1 cut(s)	123
BspQI	GCTCTTC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	73, 169
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	2 cut(s)	63, 225
BstHHI	GCGC	2 cut(s)	65, 225
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 168
BstUI	CGCG	2 cut(s)	63, 225
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	73, 169
CaiI	CAGNNNCTG	1 cut(s)	217
CfoI	GCGC	2 cut(s)	65, 225
Cfr10I	RCCGGY	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	141
CviJI	RGCY	5 cut(s)	28, 130, 217, 230, 240
CviKI_1	RGCY	5 cut(s)	28, 130, 217, 230, 240
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	239
FaiI	YATR	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	256
GlaI	GCGC	2 cut(s)	64, 224
GluI	GCNGC	1 cut(s)	96
HapII	CCGG	2 cut(s)	72, 113
HhaI	GCGC	2 cut(s)	65, 225
Hin6I	GCGC	2 cut(s)	63, 223
HinP1I	GCGC	2 cut(s)	63, 223
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	4 cut(s)	14, 35, 146, 154
HpaII	CCGG	2 cut(s)	72, 113
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	120, 135, 178, 213
Hpy188III	TCNNGA	2 cut(s)	113, 244
Hpy8I	GTNNAC	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 168
HpyF3I	CTNAG	1 cut(s)	126
HspAI	GCGC	2 cut(s)	63, 223
Kpn2I	TCCGGA	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	115
LguI	GCTCTTC	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	5, 85, 126
LweI	GCATC	2 cut(s)	84, 90
MaeI	CTAG	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	2 cut(s)	172, 179
MnlI	CCTC	3 cut(s)	141, 189, 207
MroI	TCCGGA	1 cut(s)	112
MroNI	GCCGGC	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	22
MspI	CCGG	2 cut(s)	72, 113
MvnI	CGCG	2 cut(s)	63, 225
MwoI	GCNNNNNNNGC	2 cut(s)	55, 168
NaeI	GCCGGC	1 cut(s)	73
NdeII	GATC	1 cut(s)	115
NgoMIV	GCCGGC	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	4 cut(s)	14, 35, 146, 154
PkrI	GCNGC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	4 cut(s)	191, 200, 232, 242
SfaNI	GCATC	2 cut(s)	84, 90
SmiMI	CAYNNNNRTG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	172, 179
SsiI	CCGC	3 cut(s)	61, 93, 96
SspMI	CTAG	1 cut(s)	256
TaqI	TCGA	1 cut(s)	38
TasI	AATT	2 cut(s)	172, 179
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	4 cut(s)	14, 35, 146, 154
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.