Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

22897965 .. 22898948

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCCACGAAATCGCAGATTTTTATAGGAATGTCCACGGCATCAATGCCCACCTCTTCTTCTTCATCCTCTACCACTCTCTCTATGGTCAGGAGACCTCTCACGACGTCGTTCTACAACGGCGGAGGGGGAGCTATAAAACTTGAAACGATTAGGGTTGCTCCTTCCAATAAGCAAAATCAATTCAGACAACGGGGAACTGCTTTTGTTGCTCGTATGAACCTTATCGACCGGTTTGCTATGGTCATCAAGTCATATACAAATGCAATCATGTCTTCATTTGAAGATCCTGAGAAGATCTTGGAGCAAGCAGTTCTTGAAATGAACGATGACTTGATGAAGAAGCGACAGGCCACAGCACAAGTATTGGCATCTCAAAAACAGCTGGAAAACAAGTATAAAGCTGCGCAACAGGCTTCGGACAACTGGTACCGAAAAGCACAACTAGCTGTTCGACAAGGAGAGGAAGATTTAGCACGCGAAGCTCTCAAGAGGCGTAAATCTCTGGTGGATAATGCTAGTGCTTTGAGAACTCAACTTGATCAACAAAGAGGTGTTGTTGATCGCCTTTTGTCCAATACAAAGCTTTTAGAGAGCAAGATACAAGAGGCAATGTCGAAAAAGGATAACCTAAAAGCGCGGGCTCGGTCTGCAAAGATTGCTAGTGAAGTGAGCGAGATGCTGCGGAATGTTGATACGAGTAGTGCCCTTTCGGCCTTTGGAATGATGGAAGAGAAAGTGTTGGCAATGGAAGCTCTAGGCCACTTTACTATGGATGATCTGGAAGGAAAGTTTGCGGTGCTAGAGAGCTCTTCTTCTGTTGAAGATGACCTTGCAAACTTGAAGAAACAACTGTCTGCAGGTAGTTCGAAGAAAGGAGAGCTTCCGCCGGGAAGAACTGTTGCCGCTTCAAACAAGACATTTCTATTAACGGATTCTGAGATTGAGATGGAGCTTAATGCATTGAGACGGAAAGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

328

Amino Acids

36.14

Weight (kDa)

9.61

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	75 - 282	9.9e-42	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
Acc16I	TGCGCA	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	851
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	429
AccII	CGCG	2 cut(s)	480, 640
AciI	CCGC	6 cut(s)	123, 640, 685, 797, 887, 906
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	431
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	6 cut(s)	146, 284, 320, 824, 844, 912
Alw21I	GWGCWC	1 cut(s)	812
Alw26I	GTCTC	2 cut(s)	88, 961
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	4 cut(s)	3, 351, 714, 760
ApeKI	GCWGC	2 cut(s)	404, 682
AsiGI	ACCGGT	1 cut(s)	231
Asp718I	GGTACC	1 cut(s)	429
AspLEI	GCGC	2 cut(s)	409, 640
AsuC2I	CCSGG	1 cut(s)	891
AsuII	TTCGAA	1 cut(s)	869
BaeGI	GKGCMC	1 cut(s)	709
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	429
BanII	GRGCYC	2 cut(s)	646, 812
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	812
BbvI	GCAGC	2 cut(s)	391, 669
BccI	CCATC	2 cut(s)	721, 943
BceAI	ACGGC	2 cut(s)	54, 136
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 849, 883
BclI	TGATCA	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	891
BcoDI	GTCTC	2 cut(s)	88, 961
BfaI	CTAG	5 cut(s)	446, 519, 663, 758, 803
BfmI	CTRYAG	1 cut(s)	858
BfuAI	ACCTGC	1 cut(s)	851
BglI	GCCNNNNNGGC	1 cut(s)	713
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	3 cut(s)	405, 683, 906
BlsI	GCNGC	3 cut(s)	406, 684, 907
Bme1390I	CCNGG	1 cut(s)	891
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	891
BmsI	GCATC	3 cut(s)	50, 380, 669
BpiI	GAAGAC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	869
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	891
BsaHI	GRCGYC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	2 cut(s)	618, 753
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	65, 781
BseMI	GCAATG	2 cut(s)	618, 753
BseMII	CTCAG	2 cut(s)	282, 930
BseNI	ACTGG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	2 cut(s)	391, 669
Bsh1236I	CGCG	2 cut(s)	480, 640
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	4 cut(s)	5, 353, 716, 762
BshNI	GGYRCC	1 cut(s)	429
BshTI	ACCGGT	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	812
BsiSI	CCGG	2 cut(s)	232, 890
BsmAI	GTCTC	2 cut(s)	88, 961
BsmBI	CGTCTC	1 cut(s)	961
BsnI	GGCC	4 cut(s)	5, 353, 716, 762
Bso31I	GGTCTC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	869
Bsp1286I	GDGCHC	3 cut(s)	646, 709, 812
Bsp143I	GATC	5 cut(s)	286, 297, 541, 562, 778
BspACI	CCGC	6 cut(s)	123, 640, 685, 797, 887, 906
BspANI	GGCC	4 cut(s)	5, 353, 716, 762
BspCNI	CTCAG	2 cut(s)	283, 931
BspFNI	CGCG	2 cut(s)	480, 640
BspLI	GGNNCC	1 cut(s)	431
BspMAI	CTGCAG	1 cut(s)	862
BspMI	ACCTGC	1 cut(s)	851
BspPI	GGATC	1 cut(s)	281
BspQI	GCTCTTC	1 cut(s)	817
BspT104I	TTCGAA	1 cut(s)	869
BspT107I	GGYRCC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	2 cut(s)	618, 753
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	286, 297, 541, 562, 778
BssNI	GRCGYC	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	855, 901
Bst6I	CTCTTC	3 cut(s)	61, 726, 817
BstACI	GRCGYC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstBI	TTCGAA	1 cut(s)	869
BstC8I	GCNNGC	3 cut(s)	309, 478, 642
BstDEI	CTNAG	2 cut(s)	291, 939
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	65, 781
BstFNI	CGCG	2 cut(s)	480, 640
BstHHI	GCGC	2 cut(s)	409, 640
BstKTI	GATC	5 cut(s)	289, 300, 544, 565, 781
BstMAI	GTCTC	2 cut(s)	88, 961
BstMBI	GATC	5 cut(s)	286, 297, 541, 562, 778
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	8 cut(s)	209, 413, 446, 482, 650, 659, 713, 752
BstSCI	CCNGG	1 cut(s)	889
BstSFI	CTRYAG	1 cut(s)	858
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	2 cut(s)	480, 640
BstV1I	GCAGC	2 cut(s)	391, 669
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	286, 297
BstYI	RGATCY	2 cut(s)	286, 297
BsuRI	GGCC	4 cut(s)	5, 353, 716, 762
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	65, 781
BveI	ACCTGC	1 cut(s)	851
Cac8I	GCNNGC	3 cut(s)	309, 478, 642
CfoI	GCGC	2 cut(s)	409, 640
Cfr10I	RCCGGY	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	430
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	1 cut(s)	271
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	291, 939
DpnI	GATC	5 cut(s)	288, 299, 543, 564, 780
DpnII	GATC	5 cut(s)	286, 297, 541, 562, 778
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	61, 726, 817
EarI	CTCTTC	3 cut(s)	61, 726, 817
EciI	GGCGGA	2 cut(s)	138, 876
Ecl136II	GAGCTC	1 cut(s)	810
Eco24I	GRGCYC	2 cut(s)	646, 812
Eco31I	GGTCTC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	810
EcoICRI	GAGCTC	1 cut(s)	810
EcoT22I	ATGCAT	1 cut(s)	964
EcoT38I	GRGCYC	2 cut(s)	646, 812
Esp3I	CGTCTC	1 cut(s)	961
FaeI	CATG	1 cut(s)	274
FalI	AAGNNNNNCTT	6 cut(s)	300, 332, 816, 848, 867, 899
FatI	CATG	1 cut(s)	270
FauI	CCCGC	1 cut(s)	633
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	3 cut(s)	405, 683, 906
FokI	GGATG	2 cut(s)	52, 788
FriOI	GRGCYC	2 cut(s)	646, 812
Fsp4HI	GCNGC	3 cut(s)	405, 683, 906
FspBI	CTAG	5 cut(s)	446, 519, 663, 758, 803
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	2 cut(s)	408, 639
GluI	GCNGC	3 cut(s)	405, 683, 906
HaeIII	GGCC	4 cut(s)	5, 353, 716, 762
HapII	CCGG	2 cut(s)	232, 890
HhaI	GCGC	2 cut(s)	409, 640
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	2 cut(s)	407, 638
HinP1I	GCGC	2 cut(s)	407, 638
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	1 cut(s)	935
HpaII	CCGG	2 cut(s)	232, 890
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	3 cut(s)	188, 421, 940
Hpy188III	TCNNGA	6 cut(s)	91, 103, 290, 317, 490, 782
Hpy8I	GTNNAC	1 cut(s)	36
Hpy99I	CGWCG	2 cut(s)	109, 112
HpyAV	CCTTC	2 cut(s)	174, 779
HpyCH4III	ACNGT	2 cut(s)	855, 901
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	5 cut(s)	266, 653, 836, 860, 962
HpyF10VI	GCNNNNNNNGC	8 cut(s)	209, 413, 446, 482, 650, 659, 713, 752
HpyF3I	CTNAG	2 cut(s)	291, 939
HpySE526I	ACGT	1 cut(s)	107
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	2 cut(s)	407, 638
KpnI	GGTACC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	5 cut(s)	286, 297, 541, 562, 778
LguI	GCTCTTC	1 cut(s)	817
LmnI	GCTCC	4 cut(s)	131, 166, 304, 952
Lsp1109I	GCAGC	2 cut(s)	391, 669
LweI	GCATC	3 cut(s)	50, 380, 669
MaeI	CTAG	5 cut(s)	446, 519, 663, 758, 803
MaeII	ACGT	1 cut(s)	107
MalI	GATC	5 cut(s)	288, 299, 543, 564, 780
MboI	GATC	5 cut(s)	286, 297, 541, 562, 778
MflI	RGATCY	2 cut(s)	286, 297
MhlI	GDGCHC	3 cut(s)	646, 709, 812
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	182, 979
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	8 cut(s)	64, 79, 108, 119, 457, 486, 545, 601
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	964
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	929, 957, 982
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	385
MspI	CCGG	2 cut(s)	232, 890
MspR9I	CCNGG	1 cut(s)	891
MvnI	CGCG	2 cut(s)	480, 640
MwoI	GCNNNNNNNGC	8 cut(s)	209, 413, 446, 482, 650, 659, 713, 752
NciI	CCSGG	1 cut(s)	891
NdeII	GATC	5 cut(s)	286, 297, 541, 562, 778
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	431
NsbI	TGCGCA	1 cut(s)	408
NsiI	ATGCAT	1 cut(s)	964
NspV	TTCGAA	1 cut(s)	869
PciSI	GCTCTTC	1 cut(s)	817
PfeI	GAWTC	1 cut(s)	935
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	406, 684, 907
Psp124BI	GAGCTC	1 cut(s)	812
PspN4I	GGNNCC	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	862
PsuI	RGATCY	2 cut(s)	286, 297
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	812
SapI	GCTCTTC	1 cut(s)	817
SaqAI	TTAA	3 cut(s)	929, 957, 982
SatI	GCNGC	3 cut(s)	405, 683, 906
Sau3AI	GATC	5 cut(s)	286, 297, 541, 562, 778
ScrFI	CCNGG	1 cut(s)	891
SduI	GDGCHC	3 cut(s)	646, 709, 812
SfaNI	GCATC	3 cut(s)	50, 380, 669
SfcI	CTRYAG	1 cut(s)	858
SfuI	TTCGAA	1 cut(s)	869
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	2 cut(s)	182, 979
SsiI	CCGC	6 cut(s)	123, 640, 685, 797, 887, 906
SspMI	CTAG	5 cut(s)	446, 519, 663, 758, 803
SstI	GAGCTC	1 cut(s)	812
StyD4I	CCNGG	1 cut(s)	889
TaaI	ACNGT	2 cut(s)	855, 901
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	4 cut(s)	228, 454, 617, 869
TaqII	GACCGA	1 cut(s)	636
TasI	AATT	2 cut(s)	182, 979
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	1 cut(s)	935
Tru1I	TTAA	3 cut(s)	929, 957, 982
Tru9I	TTAA	3 cut(s)	929, 957, 982
TseI	GCWGC	2 cut(s)	404, 682
TspDTI	ATGAA	5 cut(s)	54, 233, 267, 338, 353
TspGWI	ACGGA	1 cut(s)	947
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	5 cut(s)	446, 519, 663, 758, 803
ZraI	GACGTC	1 cut(s)	108
Zsp2I	ATGCAT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.