Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

22021167 .. 22022485

Gene Structure 1319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCCACGAAATCGCAGATTTTTATAGGAATGTCCACGGCATCAATGCCCACCTCTTCTTCTTCATCCTCTACCACTCTCTCTATGATCAGGAGACCTCTCACGACGTCGTTCTATAACGGCGGAGTGGGAGCTATAAAACTTGAAACGATTAAGGTTGCTCCTTCCAATAAGCAAAATCAATTTAGACAACGGGGAACTGCTTTTGTTGCTCGTATGAACCTTATCGACCGGTTTGCTATGGTCATCAAGTCATATGCAAATGCAATCATGTCTTCATTTGAAGATCCTGAGAAGATCTTGGAGCAAGCAGTTTTTGAAATGAACGATGACTTGATGAAGATGCGACAGGCCACAGCACACGTATTGGCATCTCAAAAAAGGCTGGAAAACAAGTATGAAGCTGCGCAACAGGCTTCGGAGAACTGGTACCGAAAAGCACAACAAGCTGTTAAGCAAGGAGAGGAAGATTTAGCACGCGAAGCTCTCAAGAGGCGTAAATCTCTGGCGGATAATGCTAGTGCTTTGAGAACTCAACTTGATCAACAAAGAGGTGTTGTTGATAGTCTTTTGTCCAATACAAAGCTTTTAGAGAGCAAGATACAAGAGGCAATGTCGAAAAAGGATAACCTAAAAGCGCGGGCTCGGTCTGCAAAGATTGCTAGTGAAGTGAGCGAGATGGTGGGGAATGTTGATACGAGTGGTGCCCTTTCGGCCTTTGGAATGATGGAAGAGAAAGTTTTGGCAATGGAAGCTCTAGGCCAATTAACTACGGATGATCTGGAAGGAAAGTTCGCGGTGCTAGAGAGCTCTTCTTCTGTTGAAGATGACCTTGCAAACTTGAAGAAACAACTGTCTGCAGGTAGTTCGAAGAAAGGAGAGCTTCCGCCTGGAAGAACTATTGCCGCTTCAAACAAGACATTTCTATTAAAGGATTCTGAGATTGAGATGGAGCTTAATGAATTGAGACGGAAAGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

327

Amino Acids

36.0

Weight (kDa)

9.26

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	75 - 284	1.5e-44	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
Acc16I	TGCGCA	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	851
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	2 cut(s)	429, 704
AccII	CGCG	3 cut(s)	480, 640, 797
AciI	CCGC	6 cut(s)	123, 509, 640, 797, 887, 906
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	361
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	6 cut(s)	146, 284, 320, 824, 844, 912
AjnI	CCWGG	1 cut(s)	889
AloI	GAACNNNNNNTCC	2 cut(s)	776, 808
AluBI	AGCT	9 cut(s)	134, 404, 449, 485, 586, 755, 810, 883, 955
AluI	AGCT	9 cut(s)	134, 404, 449, 485, 586, 755, 810, 883, 955
Alw21I	GWGCWC	1 cut(s)	812
Alw26I	GTCTC	2 cut(s)	88, 961
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	4 cut(s)	3, 351, 714, 760
ApeKI	GCWGC	1 cut(s)	404
AsiGI	ACCGGT	1 cut(s)	231
Asp718I	GGTACC	1 cut(s)	429
AspLEI	GCGC	2 cut(s)	409, 640
AsuII	TTCGAA	1 cut(s)	869
BaeGI	GKGCMC	1 cut(s)	709
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	429, 704
BanII	GRGCYC	2 cut(s)	646, 812
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	812
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	3 cut(s)	673, 721, 943
BceAI	ACGGC	2 cut(s)	54, 136
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 849, 883
BciT130I	CCWGG	1 cut(s)	891
BclI	TGATCA	2 cut(s)	87, 541
BcoDI	GTCTC	2 cut(s)	88, 961
BfaI	CTAG	4 cut(s)	519, 663, 758, 803
BfmI	CTRYAG	1 cut(s)	858
BfuAI	ACCTGC	1 cut(s)	851
BglI	GCCNNNNNGGC	1 cut(s)	713
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	2 cut(s)	405, 906
BlsI	GCNGC	2 cut(s)	406, 907
Bme1390I	CCNGG	1 cut(s)	891
BmiI	GGNNCC	2 cut(s)	431, 706
BmrFI	CCNGG	1 cut(s)	891
BmsI	GCATC	3 cut(s)	50, 333, 380
BpiI	GAAGAC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	869
BpuEI	CTTGAG	1 cut(s)	473
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	2 cut(s)	618, 753
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	65, 781
BseMI	GCAATG	2 cut(s)	618, 753
BseMII	CTCAG	2 cut(s)	282, 930
BseNI	ACTGG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	3 cut(s)	480, 640, 797
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	4 cut(s)	5, 353, 716, 762
BshNI	GGYRCC	2 cut(s)	429, 704
BshTI	ACCGGT	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	812
BsiSI	CCGG	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	88, 961
BsmBI	CGTCTC	1 cut(s)	961
BsnI	GGCC	4 cut(s)	5, 353, 716, 762
Bso31I	GGTCTC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	869
Bsp1286I	GDGCHC	3 cut(s)	646, 709, 812
Bsp143I	GATC	5 cut(s)	87, 286, 297, 541, 778
BspACI	CCGC	6 cut(s)	123, 509, 640, 797, 887, 906
BspANI	GGCC	4 cut(s)	5, 353, 716, 762
BspCNI	CTCAG	2 cut(s)	283, 931
BspFNI	CGCG	3 cut(s)	480, 640, 797
BspLI	GGNNCC	2 cut(s)	431, 706
BspMAI	CTGCAG	1 cut(s)	862
BspMI	ACCTGC	1 cut(s)	851
BspPI	GGATC	1 cut(s)	281
BspQI	GCTCTTC	1 cut(s)	817
BspT104I	TTCGAA	1 cut(s)	869
BspT107I	GGYRCC	2 cut(s)	429, 704
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	2 cut(s)	618, 753
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	87, 286, 297, 541, 778
BssNI	GRCGYC	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	1 cut(s)	855
Bst6I	CTCTTC	3 cut(s)	61, 726, 817
BstACI	GRCGYC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstBAI	YACGTR	1 cut(s)	364
BstBI	TTCGAA	1 cut(s)	869
BstC8I	GCNNGC	3 cut(s)	309, 478, 642
BstDEI	CTNAG	2 cut(s)	291, 939
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	65, 781
BstFNI	CGCG	3 cut(s)	480, 640, 797
BstHHI	GCGC	2 cut(s)	409, 640
BstKTI	GATC	5 cut(s)	90, 289, 300, 544, 781
BstMAI	GTCTC	2 cut(s)	88, 961
BstMBI	GATC	5 cut(s)	87, 286, 297, 541, 778
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	9 cut(s)	209, 413, 446, 482, 515, 650, 659, 713, 752
BstNI	CCWGG	1 cut(s)	891
BstSCI	CCNGG	1 cut(s)	889
BstSFI	CTRYAG	1 cut(s)	858
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	3 cut(s)	480, 640, 797
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	286, 297
BstYI	RGATCY	2 cut(s)	286, 297
BsuRI	GGCC	4 cut(s)	5, 353, 716, 762
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	65, 781
BveI	ACCTGC	1 cut(s)	851
Cac8I	GCNNGC	3 cut(s)	309, 478, 642
CfoI	GCGC	2 cut(s)	409, 640
Cfr10I	RCCGGY	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	430
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	1 cut(s)	271
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	291, 939
DpnI	GATC	5 cut(s)	89, 288, 299, 543, 780
DpnII	GATC	5 cut(s)	87, 286, 297, 541, 778
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	61, 726, 817
EarI	CTCTTC	3 cut(s)	61, 726, 817
EciI	GGCGGA	3 cut(s)	138, 524, 876
Ecl136II	GAGCTC	1 cut(s)	810
Eco24I	GRGCYC	2 cut(s)	646, 812
Eco31I	GGTCTC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	810
EcoICRI	GAGCTC	1 cut(s)	810
EcoRII	CCWGG	1 cut(s)	889
EcoT38I	GRGCYC	2 cut(s)	646, 812
Esp3I	CGTCTC	1 cut(s)	961
FaeI	CATG	1 cut(s)	274
FalI	AAGNNNNNCTT	4 cut(s)	816, 848, 867, 899
FatI	CATG	1 cut(s)	270
FauI	CCCGC	1 cut(s)	633
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	2 cut(s)	87, 541
Fnu4HI	GCNGC	2 cut(s)	405, 906
FokI	GGATG	2 cut(s)	52, 788
FriOI	GRGCYC	2 cut(s)	646, 812
Fsp4HI	GCNGC	2 cut(s)	405, 906
FspBI	CTAG	4 cut(s)	519, 663, 758, 803
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	2 cut(s)	408, 639
GluI	GCNGC	2 cut(s)	405, 906
HaeIII	GGCC	4 cut(s)	5, 353, 716, 762
HapII	CCGG	1 cut(s)	232
HhaI	GCGC	2 cut(s)	409, 640
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	2 cut(s)	407, 638
HinP1I	GCGC	2 cut(s)	407, 638
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	1 cut(s)	935
HpaII	CCGG	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	421, 940
Hpy188III	TCNNGA	5 cut(s)	91, 103, 290, 490, 782
Hpy8I	GTNNAC	1 cut(s)	36
Hpy99I	CGWCG	2 cut(s)	109, 112
HpyAV	CCTTC	2 cut(s)	174, 779
HpyCH4III	ACNGT	1 cut(s)	855
HpyCH4IV	ACGT	2 cut(s)	107, 363
HpyCH4V	TGCA	5 cut(s)	260, 266, 653, 836, 860
HpyF10VI	GCNNNNNNNGC	9 cut(s)	209, 413, 446, 482, 515, 650, 659, 713, 752
HpyF3I	CTNAG	2 cut(s)	291, 939
HpySE526I	ACGT	2 cut(s)	107, 363
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	2 cut(s)	407, 638
KpnI	GGTACC	1 cut(s)	433
Ksp22I	TGATCA	2 cut(s)	87, 541
Kzo9I	GATC	5 cut(s)	87, 286, 297, 541, 778
LguI	GCTCTTC	1 cut(s)	817
LmnI	GCTCC	4 cut(s)	131, 166, 304, 952
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	3 cut(s)	50, 333, 380
MaeI	CTAG	4 cut(s)	519, 663, 758, 803
MaeII	ACGT	2 cut(s)	107, 363
MalI	GATC	5 cut(s)	89, 288, 299, 543, 780
MboI	GATC	5 cut(s)	87, 286, 297, 541, 778
MflI	RGATCY	2 cut(s)	286, 297
MhlI	GDGCHC	3 cut(s)	646, 709, 812
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	182, 764, 962, 979
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	64, 79, 108, 457, 486, 545, 601
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	153, 453, 767, 929, 957, 982
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	891
MvaI	CCWGG	1 cut(s)	891
MvnI	CGCG	3 cut(s)	480, 640, 797
MwoI	GCNNNNNNNGC	9 cut(s)	209, 413, 446, 482, 515, 650, 659, 713, 752
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	5 cut(s)	87, 286, 297, 541, 778
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	431, 706
NsbI	TGCGCA	1 cut(s)	408
NspV	TTCGAA	1 cut(s)	869
PciSI	GCTCTTC	1 cut(s)	817
PfeI	GAWTC	1 cut(s)	935
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	406, 907
Ppu21I	YACGTR	1 cut(s)	364
Psp124BI	GAGCTC	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	2 cut(s)	431, 706
PstI	CTGCAG	1 cut(s)	862
PsuI	RGATCY	2 cut(s)	286, 297
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	812
SapI	GCTCTTC	1 cut(s)	817
SaqAI	TTAA	6 cut(s)	153, 453, 767, 929, 957, 982
SatI	GCNGC	2 cut(s)	405, 906
Sau3AI	GATC	5 cut(s)	87, 286, 297, 541, 778
ScrFI	CCNGG	1 cut(s)	891
SduI	GDGCHC	3 cut(s)	646, 709, 812
SfaNI	GCATC	3 cut(s)	50, 333, 380
SfcI	CTRYAG	1 cut(s)	858
SfuI	TTCGAA	1 cut(s)	869
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	4 cut(s)	182, 764, 962, 979
SsiI	CCGC	6 cut(s)	123, 509, 640, 797, 887, 906
SspMI	CTAG	4 cut(s)	519, 663, 758, 803
SstI	GAGCTC	1 cut(s)	812
StyD4I	CCNGG	1 cut(s)	889
TaaI	ACNGT	1 cut(s)	855
TaiI	ACGT	2 cut(s)	110, 366
TaqI	TCGA	3 cut(s)	228, 617, 869
TaqII	GACCGA	1 cut(s)	636
TasI	AATT	4 cut(s)	182, 764, 962, 979
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	1 cut(s)	935
Tru1I	TTAA	6 cut(s)	153, 453, 767, 929, 957, 982
Tru9I	TTAA	6 cut(s)	153, 453, 767, 929, 957, 982
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	7 cut(s)	54, 233, 267, 338, 353, 414, 975
TspGWI	ACGGA	1 cut(s)	788
XspI	CTAG	4 cut(s)	519, 663, 758, 803
ZraI	GACGTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.