Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

23792245 .. 23794594

Gene Structure 2350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0237700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTTGCACATGTTGCTGATTTTGGTATTGCGAGACTCTTGGCTGGAGGAGATTCTATGACTCAAACCATGACTCTAGCCACAATTGGGTATATTGCTCCAGAGTATGGAATGGAAGGAATAGTGACCAGAAGAGGGGATGTGTATAGTTTTGGTATTGTAGTGATGGAAACATTCACAAGAAGGAAGCCAACCGATGAGATCTTCATTGGGGACATGAGATTTAATCAATGGGTTGCAAGTTTTCTAGATGCGGATGCGATAGCTGAAGTTGTGGATGCTACTTTACTTGGAACCGAGGAGGATCATGAGTTCGTGAGCAAGAGGGAGTGCTTATCATCCATTATGAGATTAGCTGTTGCTTGTTCAGCAGAATCACCGGAAGAGAGGATAAACATGCAAGAGGCTGTAGCCATGCTTAAAACAATCAAGATCAAGTTTTCAAAGCAAGCTGCAGCAGGAGTTCTCAAAGCACTCATCATGTTTCCTGGTGGAGGAATGCATGCACCTAAGTTGAATGAGATGAAAACGTATCTCCATTACTTGCCAATTGCAAAACTTGTGAATATCCTTTGCGAGACCAATGGTGCTTATACCTTCATATTGCAAATGGCTCTGAACAGCAGGCATCATCAACCTCAATATGCTATCTGGTCCATTGAGGAGGAGGACCTCATGAGGTTCATGATTGAGGAAGAGGTGATGAAGAGCTCTAACAGATTAGCTGCACTTGACTCTGCCTCTGTTTACATTCTTTCTCGTCATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

256

Amino Acids

28.6

Weight (kDa)

5.33

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 139	6.3e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 138	1.8e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	107
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	288
AfiI	CCNNNNNNNGG	4 cut(s)	87, 107, 135, 494
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	444, 517
AjnI	CCWGG	1 cut(s)	487
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	5 cut(s)	266, 356, 452, 711, 725
AluI	AGCT	5 cut(s)	266, 356, 452, 711, 725
Alw21I	GWGCWC	1 cut(s)	713
Alw26I	GTCTC	2 cut(s)	28, 572
AlwI	GGATC	1 cut(s)	312
ApeKI	GCWGC	3 cut(s)	452, 455, 725
AspS9I	GGNCC	2 cut(s)	654, 670
AsuHPI	GGTGA	2 cut(s)	369, 712
AvaII	GGWCC	2 cut(s)	654, 670
BanII	GRGCYC	1 cut(s)	713
Bbv12I	GWGCWC	1 cut(s)	713
BbvI	GCAGC	3 cut(s)	439, 467, 712
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	28, 572
BfaI	CTAG	2 cut(s)	77, 248
BfmI	CTRYAG	2 cut(s)	408, 453
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	3 cut(s)	453, 456, 726
BlsI	GCNGC	3 cut(s)	454, 457, 727
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	2 cut(s)	654, 670
BmgT120I	GGNCC	2 cut(s)	654, 670
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	4 cut(s)	241, 247, 268, 637
BpmI	CTGGAG	2 cut(s)	66, 84
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 107, 135, 494
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	4 cut(s)	145, 262, 283, 338
BseLI	CCNNNNNNNGG	4 cut(s)	87, 107, 135, 494
BseRI	GAGGAG	4 cut(s)	63, 314, 677, 680
BseXI	GCAGC	3 cut(s)	439, 467, 712
BsgI	GTGCAG	1 cut(s)	711
BsiHKAI	GWGCWC	1 cut(s)	713
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	4 cut(s)	87, 107, 135, 494
BsmAI	GTCTC	2 cut(s)	28, 572
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	504
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	3 cut(s)	201, 304, 432
BspACI	CCGC	1 cut(s)	254
BspHI	TCATGA	4 cut(s)	307, 675, 684, 763
BspLI	GGNNCC	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	1 cut(s)	312
BspQI	GCTCTTC	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	572
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	3 cut(s)	201, 304, 432
Bst2UI	CCWGG	1 cut(s)	489
Bst6I	CTCTTC	4 cut(s)	127, 378, 690, 701
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	450, 504, 626
BstDEI	CTNAG	1 cut(s)	510
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstF5I	GGATG	4 cut(s)	145, 262, 283, 338
BstKTI	GATC	3 cut(s)	204, 307, 435
BstMAI	GTCTC	2 cut(s)	28, 572
BstMBI	GATC	3 cut(s)	201, 304, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 368
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	3 cut(s)	14, 400, 506
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	2 cut(s)	408, 453
BstV1I	GCAGC	3 cut(s)	439, 467, 712
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	145, 262, 283, 338
Cac8I	GCNNGC	3 cut(s)	450, 504, 626
CciI	TCATGA	4 cut(s)	307, 675, 684, 763
Cfr13I	GGNCC	2 cut(s)	654, 670
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	3 cut(s)	203, 306, 434
DpnII	GATC	3 cut(s)	201, 304, 432
Eam1104I	CTCTTC	4 cut(s)	127, 378, 690, 701
EarI	CTCTTC	4 cut(s)	127, 378, 690, 701
Ecl136II	GAGCTC	1 cut(s)	711
Eco24I	GRGCYC	1 cut(s)	713
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	2 cut(s)	654, 670
Eco53kI	GAGCTC	1 cut(s)	711
Eco57I	CTGAAG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	711
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	487
EcoT22I	ATGCAT	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	713
FaqI	GGGAC	1 cut(s)	227
Fnu4HI	GCNGC	3 cut(s)	453, 456, 726
FokI	GGATG	4 cut(s)	152, 269, 290, 325
FriOI	GRGCYC	1 cut(s)	713
Fsp4HI	GCNGC	3 cut(s)	453, 456, 726
FspBI	CTAG	2 cut(s)	77, 248
GluI	GCNGC	3 cut(s)	453, 456, 726
GsuI	CTGGAG	2 cut(s)	66, 84
HapII	CCGG	1 cut(s)	380
HinfI	GANTC	6 cut(s)	36, 53, 61, 73, 374, 734
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	2 cut(s)	369, 712
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	1 cut(s)	618
Hpy188III	TCNNGA	8 cut(s)	101, 248, 308, 316, 430, 676, 685, 764
Hpy8I	GTNNAC	1 cut(s)	748
HpyAV	CCTTC	3 cut(s)	110, 177, 607
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	9 cut(s)	8, 239, 400, 455, 502, 506, 554, 607, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 368
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	1 cut(s)	530
Kzo9I	GATC	3 cut(s)	201, 304, 432
LguI	GCTCTTC	1 cut(s)	701
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	9 cut(s)	30, 114, 142, 393, 444, 474, 501, 610, 637
Lsp1109I	GCAGC	3 cut(s)	439, 467, 712
LweI	GCATC	4 cut(s)	241, 247, 268, 637
MaeI	CTAG	2 cut(s)	77, 248
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	3 cut(s)	203, 306, 434
MboI	GATC	3 cut(s)	201, 304, 432
MboII	GAAGA	5 cut(s)	144, 196, 395, 707, 718
MfeI	CAATTG	2 cut(s)	84, 549
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	713
MluCI	AATT	2 cut(s)	84, 549
MlyI	GAGTC	4 cut(s)	30, 55, 67, 728
Mph1103I	ATGCAT	1 cut(s)	504
MseI	TTAA	2 cut(s)	225, 420
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	489
MunI	CAATTG	2 cut(s)	84, 549
Mva1269I	GAATGC	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	14, 368
NdeII	GATC	3 cut(s)	201, 304, 432
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	3 cut(s)	14, 400, 506
PaeI	GCATGC	1 cut(s)	506
PagI	TCATGA	4 cut(s)	307, 675, 684, 763
PciI	ACATGT	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	701
PctI	GAATGC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	53, 374
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	3 cut(s)	454, 457, 727
PleI	GAGTC	4 cut(s)	30, 55, 67, 728
PpsI	GAGTC	4 cut(s)	30, 55, 67, 728
PpuMI	RGGWCCY	1 cut(s)	670
PscI	ACATGT	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	713
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	654, 670
PspPPI	RGGWCCY	1 cut(s)	670
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	701
SaqAI	TTAA	2 cut(s)	225, 420
SatI	GCNGC	3 cut(s)	453, 456, 726
Sau3AI	GATC	3 cut(s)	201, 304, 432
Sau96I	GGNCC	2 cut(s)	654, 670
SchI	GAGTC	4 cut(s)	30, 55, 67, 728
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	1 cut(s)	713
SfaNI	GCATC	4 cut(s)	241, 247, 268, 637
SfcI	CTRYAG	2 cut(s)	408, 453
SinI	GGWCC	2 cut(s)	654, 670
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	2 cut(s)	84, 549
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	2 cut(s)	77, 248
SstI	GAGCTC	1 cut(s)	713
StyD4I	CCNGG	1 cut(s)	487
TaiI	ACGT	1 cut(s)	533
TasI	AATT	2 cut(s)	84, 549
TfiI	GAWTC	2 cut(s)	53, 374
Tru1I	TTAA	2 cut(s)	225, 420
Tru9I	TTAA	2 cut(s)	225, 420
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	452, 455, 725
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	5 cut(s)	196, 539, 589, 673, 719
Van91I	CCANNNNNTGG	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	654, 670
XagI	CCTNNNNNAGG	1 cut(s)	492
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	3 cut(s)	14, 400, 506
XspI	CTAG	2 cut(s)	77, 248
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.