Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Forward (+)

33773008 .. 33780390

Gene Structure 7383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCCACAAAATGGCAGATATTTACAGGATTGACAATGGCGTCAACAACGCCCGCGTCTTCATTCCAAGCCTCTTCTTCTTCATCATCCTCCACCAGTCTCTCCATGGTCAGGAGACCTCTCGCGACCTCCTTCTTTAATGGTGGAGTGGGAGCTCTGAGAGTTGAAGTGATTAGGGTCGCTCCTTCCTATAAGAGACATAATTTTAGACAACGTGGAGGTGCTCTTGGTGCCCGTATGAACCTTTTTGATCGGTTTGCTAGAGTTTTGAAGTCATATGCAAATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAATCTTGGAGCAAGCAGTCCTTGAAATGAATGATGACTTGATGAAGATGCGTCAGGCCACAGCACAAGTATTGGCATCTCAAAAACAGTTGGAAAATAAGTATAAAGCTGCGCAACAAGCTTCTGAGGAATGGTACCGAAAAGCACAATTAGCTCTTAAAAAAGGAGAGGAGGATCTTGCACGTGAAGCTCTGAAGAGGCGTAAATCTTTTGCGGATAATGCTAGTTCTTTGAAAACTCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTCTCTAATACAAAGCTTTTAGAGAACAAGATCCAAGAAGCAAGGTCGAAAAAAGATACCCTCAAAGCACGCGCTCAGTCTGCAAAGACTGCTAATAAAGTGAGTGAGATGGTGGGGAATGTTAATACAAGTAGTGCCCTTTCCGCTTTTGAAAAGATGGAAGAGAAAGTCTTAGCACTGGAATCCCAAGCAGAAGCTCTTGGCCAGTTAACTACAGATGATCTAGAAGGAAAGTTTGCAATGCTAGAGAGCTCTTCTGTTGACGATGATCTTGCAAACTTGAAGAAAGAACTGTCTGGTAGTTCAAAGAAAGGAGAGCTTCCGGCTGGAAGAACTGTTGCTCCATCGAACAAGGCATATCCATTTAAGGATTCTGAGATTGAGATGGAGCTTAATGAATTAAGACGGAAAGCCAAGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

339

Amino Acids

37.33

Weight (kDa)

9.49

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	81 - 294	7.1e-53	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
Acc16I	TGCGCA	1 cut(s)	429
Acc65I	GGTACC	1 cut(s)	450
AccB1I	GGYRCC	2 cut(s)	230, 450
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccII	CGCG	3 cut(s)	56, 125, 663
AciI	CCGC	3 cut(s)	54, 530, 735
AclWI	GGATC	3 cut(s)	302, 498, 616
AcoI	YGGCCR	2 cut(s)	3, 793
AcuI	CTGAAG	1 cut(s)	530
AcvI	CACGTG	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	12, 111
AgsI	TTSAA	8 cut(s)	167, 271, 305, 341, 550, 743, 874, 897
AloI	GAACNNNNNNTCC	2 cut(s)	916, 948
Alw21I	GWGCWC	3 cut(s)	157, 226, 845
Alw26I	GTCTC	4 cut(s)	104, 109, 190, 598
AlwI	GGATC	3 cut(s)	302, 498, 616
AoxI	GGCC	3 cut(s)	3, 372, 793
ApeKI	GCWGC	1 cut(s)	425
Asp718I	GGTACC	1 cut(s)	450
AspLEI	GCGC	2 cut(s)	430, 665
BaeGI	GKGCMC	2 cut(s)	235, 730
BalI	TGGCCA	2 cut(s)	5, 795
BanI	GGYRCC	2 cut(s)	230, 450
BanII	GRGCYC	2 cut(s)	157, 845
BbrPI	CACGTG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	3 cut(s)	157, 226, 845
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	4 cut(s)	694, 742, 943, 970
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	4 cut(s)	104, 109, 190, 598
BfaI	CTAG	4 cut(s)	261, 540, 815, 836
BfmI	CTRYAG	1 cut(s)	804
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	232, 452
BmsI	GCATC	2 cut(s)	354, 401
BpiI	GAAGAC	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	105, 1005
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 111
Bse1I	ACTGG	3 cut(s)	96, 774, 796
Bse3DI	GCAATG	1 cut(s)	837
BseDI	CCNNGG	2 cut(s)	105, 1005
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	12, 111
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	5 cut(s)	149, 303, 432, 680, 957
BseNI	ACTGG	3 cut(s)	96, 774, 796
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	2 cut(s)	235, 730
BseXI	GCAGC	1 cut(s)	412
Bsh1236I	CGCG	3 cut(s)	56, 125, 663
BshFI	GGCC	3 cut(s)	5, 374, 795
BshNI	GGYRCC	2 cut(s)	230, 450
BsiHKAI	GWGCWC	3 cut(s)	157, 226, 845
BsiSI	CCGG	1 cut(s)	914
BslI	CCNNNNNNNGG	2 cut(s)	12, 111
BsmAI	GTCTC	4 cut(s)	104, 109, 190, 598
BsnI	GGCC	3 cut(s)	5, 374, 795
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	5 cut(s)	157, 226, 235, 730, 845
Bsp143I	GATC	7 cut(s)	250, 307, 490, 562, 621, 811, 859
Bsp19I	CCATGG	1 cut(s)	105
Bsp68I	TCGCGA	1 cut(s)	125
BspACI	CCGC	3 cut(s)	54, 530, 735
BspANI	GGCC	3 cut(s)	5, 374, 795
BspCNI	CTCAG	5 cut(s)	150, 304, 433, 679, 958
BspFNI	CGCG	3 cut(s)	56, 125, 663
BspLI	GGNNCC	2 cut(s)	232, 452
BspPI	GGATC	3 cut(s)	302, 498, 616
BspQI	GCTCTTC	1 cut(s)	850
BspT107I	GGYRCC	2 cut(s)	230, 450
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	837
BsrI	ACTGG	3 cut(s)	96, 774, 796
BssECI	CCNNGG	2 cut(s)	105, 1005
BssMI	GATC	7 cut(s)	250, 307, 490, 562, 621, 811, 859
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	2 cut(s)	105, 1005
Bst4CI	ACNGT	3 cut(s)	405, 885, 928
Bst6I	CTCTTC	4 cut(s)	79, 506, 747, 850
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	54, 330, 661
BstDEI	CTNAG	6 cut(s)	158, 312, 441, 666, 763, 966
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	3 cut(s)	56, 125, 663
BstHHI	GCGC	2 cut(s)	430, 665
BstKTI	GATC	7 cut(s)	253, 310, 493, 565, 624, 814, 862
BstMAI	GTCTC	4 cut(s)	104, 109, 190, 598
BstMBI	GATC	7 cut(s)	250, 307, 490, 562, 621, 811, 859
BstMWI	GCNNNNNNNGC	8 cut(s)	230, 434, 467, 503, 536, 671, 680, 734
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	2 cut(s)	235, 730
BstUI	CGCG	3 cut(s)	56, 125, 663
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	3 cut(s)	307, 490, 621
BstYI	RGATCY	3 cut(s)	307, 490, 621
BsuRI	GGCC	3 cut(s)	5, 374, 795
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	767
BtuMI	TCGCGA	1 cut(s)	125
Cac8I	GCNNGC	3 cut(s)	54, 330, 661
CfoI	GCGC	2 cut(s)	430, 665
CseI	GACGC	3 cut(s)	30, 45, 356
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	6 cut(s)	158, 312, 441, 666, 763, 966
DpnI	GATC	7 cut(s)	252, 309, 492, 564, 623, 813, 861
DpnII	GATC	7 cut(s)	250, 307, 490, 562, 621, 811, 859
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	2 cut(s)	3, 793
Eam1104I	CTCTTC	4 cut(s)	79, 506, 747, 850
EarI	CTCTTC	4 cut(s)	79, 506, 747, 850
Ecl136II	GAGCTC	2 cut(s)	155, 843
Eco130I	CCWWGG	2 cut(s)	105, 1005
Eco24I	GRGCYC	2 cut(s)	157, 845
Eco31I	GGTCTC	1 cut(s)	109
Eco53kI	GAGCTC	2 cut(s)	155, 843
Eco57I	CTGAAG	1 cut(s)	530
Eco72I	CACGTG	1 cut(s)	500
EcoICRI	GAGCTC	2 cut(s)	155, 843
EcoT14I	CCWWGG	2 cut(s)	105, 1005
EcoT38I	GRGCYC	2 cut(s)	157, 845
ErhI	CCWWGG	2 cut(s)	105, 1005
FaeI	CATG	1 cut(s)	109
FaiI	YATR	9 cut(s)	107, 192, 201, 239, 277, 279, 293, 420, 949
FalI	AAGNNNNNCTT	4 cut(s)	321, 353, 894, 926
FatI	CATG	1 cut(s)	105
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	2 cut(s)	157, 845
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	4 cut(s)	261, 540, 815, 836
FspI	TGCGCA	1 cut(s)	429
GlaI	GCGC	2 cut(s)	429, 664
GluI	GCNGC	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	5, 374, 795
HapII	CCGG	1 cut(s)	914
HgaI	GACGC	3 cut(s)	30, 45, 356
HhaI	GCGC	2 cut(s)	430, 665
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	2 cut(s)	428, 663
HinP1I	GCGC	2 cut(s)	428, 663
HincII	GTYRAC	3 cut(s)	45, 801, 853
HindII	GTYRAC	3 cut(s)	45, 801, 853
HindIII	AAGCTT	2 cut(s)	435, 605
HinfI	GANTC	2 cut(s)	773, 962
HpaI	GTTAAC	1 cut(s)	801
HpaII	CCGG	1 cut(s)	914
Hpy166II	GTNNAC	3 cut(s)	45, 801, 853
Hpy188I	TCNGA	4 cut(s)	159, 442, 510, 967
Hpy188III	TCNNGA	4 cut(s)	112, 124, 311, 815
Hpy8I	GTNNAC	3 cut(s)	45, 801, 853
HpyAV	CCTTC	3 cut(s)	142, 195, 812
HpyCH4III	ACNGT	3 cut(s)	405, 885, 928
HpyCH4IV	ACGT	2 cut(s)	214, 499
HpyCH4V	TGCA	6 cut(s)	281, 287, 497, 674, 830, 866
HpyF10VI	GCNNNNNNNGC	8 cut(s)	230, 434, 467, 503, 536, 671, 680, 734
HpyF3I	CTNAG	6 cut(s)	158, 312, 441, 666, 763, 966
HpySE526I	ACGT	2 cut(s)	214, 499
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	2 cut(s)	428, 663
KpnI	GGTACC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	562
KspAI	GTTAAC	1 cut(s)	801
Kzo9I	GATC	7 cut(s)	250, 307, 490, 562, 621, 811, 859
LguI	GCTCTTC	1 cut(s)	850
LmnI	GCTCC	5 cut(s)	152, 187, 325, 937, 979
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	2 cut(s)	354, 401
MaeI	CTAG	4 cut(s)	261, 540, 815, 836
MaeII	ACGT	2 cut(s)	214, 499
MalI	GATC	7 cut(s)	252, 309, 492, 564, 623, 813, 861
MboI	GATC	7 cut(s)	250, 307, 490, 562, 621, 811, 859
MflI	RGATCY	3 cut(s)	307, 490, 621
MhlI	GDGCHC	5 cut(s)	157, 226, 235, 730, 845
MlsI	TGGCCA	2 cut(s)	5, 795
MluCI	AATT	3 cut(s)	202, 464, 989
MluNI	TGGCCA	2 cut(s)	5, 795
MmeI	TCCRAC	1 cut(s)	387
Mox20I	TGGCCA	2 cut(s)	5, 795
MscI	TGGCCA	2 cut(s)	5, 795
MseI	TTAA	7 cut(s)	138, 474, 714, 800, 957, 984, 992
Msp20I	TGGCCA	2 cut(s)	5, 795
MspI	CCGG	1 cut(s)	914
MvnI	CGCG	3 cut(s)	56, 125, 663
MwoI	GCNNNNNNNGC	8 cut(s)	230, 434, 467, 503, 536, 671, 680, 734
NcoI	CCATGG	1 cut(s)	105
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	7 cut(s)	250, 307, 490, 562, 621, 811, 859
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	232, 452
NruI	TCGCGA	1 cut(s)	125
NsbI	TGCGCA	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	850
PfeI	GAWTC	2 cut(s)	773, 962
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	427
PmaCI	CACGTG	1 cut(s)	500
PmlI	CACGTG	1 cut(s)	500
Ppu21I	YACGTR	1 cut(s)	500
Psp124BI	GAGCTC	2 cut(s)	157, 845
PspCI	CACGTG	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	232, 452
PsuI	RGATCY	3 cut(s)	307, 490, 621
RruI	TCGCGA	1 cut(s)	125
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SacI	GAGCTC	2 cut(s)	157, 845
SapI	GCTCTTC	1 cut(s)	850
SaqAI	TTAA	7 cut(s)	138, 474, 714, 800, 957, 984, 992
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	7 cut(s)	250, 307, 490, 562, 621, 811, 859
SduI	GDGCHC	5 cut(s)	157, 226, 235, 730, 845
SfaNI	GCATC	2 cut(s)	354, 401
SfcI	CTRYAG	1 cut(s)	804
Sse9I	AATT	3 cut(s)	202, 464, 989
SsiI	CCGC	3 cut(s)	54, 530, 735
SspMI	CTAG	4 cut(s)	261, 540, 815, 836
SstI	GAGCTC	2 cut(s)	157, 845
StyI	CCWWGG	2 cut(s)	105, 1005
TaaI	ACNGT	3 cut(s)	405, 885, 928
TaiI	ACGT	2 cut(s)	217, 502
TaqI	TCGA	2 cut(s)	638, 938
TasI	AATT	3 cut(s)	202, 464, 989
TfiI	GAWTC	2 cut(s)	773, 962
Tru1I	TTAA	7 cut(s)	138, 474, 714, 800, 957, 984, 992
Tru9I	TTAA	7 cut(s)	138, 474, 714, 800, 957, 984, 992
TscAI	CASTG	1 cut(s)	774
TseI	GCWGC	1 cut(s)	425
TspDTI	ATGAA	6 cut(s)	51, 72, 254, 359, 374, 1002
TspGWI	ACGGA	1 cut(s)	1012
TspRI	CASTG	1 cut(s)	774
Van91I	CCANNNNNTGG	1 cut(s)	12
XbaI	TCTAGA	1 cut(s)	814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	4 cut(s)	261, 540, 815, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.