Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Forward (+)

35448538 .. 35456638

Gene Structure 8101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49483

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCCACAAAATCGCAGATATTTACAGGATTGACAATGGCGTCAACAACGCCCGCGTCTTCATTCCAAGCCTCTTCTTCTTCTTCTTCTTCATCATCCTCCACCAGTCTCTCTATGGTCAGGAGACCTCTCGCGACCTCCTTCTTTAATGGTGGAGTGGGAGCTCTGAGAGTTGAAGTGATTAGGGTCGCTCCTTCCTATAAGAGACATAATTTTAGACAACGTGGAGGTGCTCTTGGTGCCCGTATGAACCTTTTTGATCGGTTTGCTAGAGTTTTGAAGTCATATGCAAATGCACTCATAAGTTCCTTTGAAGATCCTGAGAAAATCTTGGAGCAAGCAGTCCTTGAAATGAATGATGACTTGACGAAGATGCGTCAGGCCACGGCACAAGTATTGGCATCTCAAAAACGGTTGGAAAATAAGTATAAAGCTGCGCAACAAGCTTCTGAGGAATGGTACCGAAAAGCACAATTAGCTCTTAAAAAAGGAGAGGAGGATCTTGCACGTGAAGCTCTGAAGAGGCGTAAATCTTTTGCGGATAATGCTAATTCTTTGAAAACTCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTCTCTAATACAAAGCTTTTAGAGAACAAGATACAAGAAGCAAGGTCGAAAAAAGATACCCTCAAAGCACGTGCTCAGTCTGCAAAGACTGCTAATAAAGTGAGTGAGATGGTGGGGAATGTTAATACAAGTAGTGCCCTTTCCACTTTTGAAAAGATGGAAGAGAAAGTCTTAGCACTGGAATCCCAAGCAGAAGCTCTTGGCCAGTTAACTACAGATGATCTAGAAGGAAAGTTTGCAATGCTAGAGAGCTCTTCTGTTGACGATGATCTTGCAAACTTGAAGAAAGAACTGTCTGGTAGTTCAAAGAAAGGAGAGCTTCCGGCTGGAAGAACTGTTGCTCCTTCGAACAAGGCATATCCATTTAAGGATTCTGAGATTGAGATGGAGCTTAATGAATTAAGACGGAGAGCCAAGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

341

Amino Acids

37.57

Weight (kDa)

9.56

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	84 - 297	3.7e-53	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
Acc16I	TGCGCA	1 cut(s)	438
Acc65I	GGTACC	1 cut(s)	459
AccB1I	GGYRCC	2 cut(s)	239, 459
AccII	CGCG	2 cut(s)	56, 134
AciI	CCGC	2 cut(s)	54, 539
AclWI	GGATC	2 cut(s)	311, 507
AcoI	YGGCCR	2 cut(s)	3, 802
AcuI	CTGAAG	1 cut(s)	539
AcvI	CACGTG	2 cut(s)	509, 671
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	461
AgsI	TTSAA	8 cut(s)	176, 280, 314, 350, 559, 752, 883, 906
AloI	GAACNNNNNNTCC	2 cut(s)	925, 957
Alw21I	GWGCWC	4 cut(s)	166, 235, 676, 854
Alw26I	GTCTC	4 cut(s)	113, 118, 199, 607
AlwI	GGATC	2 cut(s)	311, 507
AoxI	GGCC	3 cut(s)	3, 381, 802
ApeKI	GCWGC	1 cut(s)	434
Asp718I	GGTACC	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	439
AsuII	TTCGAA	1 cut(s)	947
BaeGI	GKGCMC	2 cut(s)	244, 739
BalI	TGGCCA	2 cut(s)	5, 804
BanI	GGYRCC	2 cut(s)	239, 459
BanII	GRGCYC	2 cut(s)	166, 854
BbrPI	CACGTG	2 cut(s)	509, 671
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	4 cut(s)	166, 235, 676, 854
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	3 cut(s)	703, 751, 979
BceAI	ACGGC	1 cut(s)	402
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	4 cut(s)	113, 118, 199, 607
BfaI	CTAG	3 cut(s)	270, 824, 845
BfmI	CTRYAG	1 cut(s)	813
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	241, 461
BmsI	GCATC	2 cut(s)	363, 410
BpiI	GAAGAC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	947
BsaAI	YACGTR	2 cut(s)	509, 671
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	384, 1014
BsaXI	ACNNNNNCTCC	2 cut(s)	925, 955
Bse1I	ACTGG	3 cut(s)	105, 783, 805
Bse3DI	GCAATG	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	384, 1014
BseGI	GGATG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	5 cut(s)	158, 312, 441, 689, 966
BseNI	ACTGG	3 cut(s)	105, 783, 805
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	2 cut(s)	244, 739
BseXI	GCAGC	1 cut(s)	421
Bsh1236I	CGCG	2 cut(s)	56, 134
BshFI	GGCC	3 cut(s)	5, 383, 804
BshNI	GGYRCC	2 cut(s)	239, 459
BsiHKAI	GWGCWC	4 cut(s)	166, 235, 676, 854
BsiSI	CCGG	1 cut(s)	923
BsmAI	GTCTC	4 cut(s)	113, 118, 199, 607
BsnI	GGCC	3 cut(s)	5, 383, 804
Bso31I	GGTCTC	1 cut(s)	118
Bsp119I	TTCGAA	1 cut(s)	947
Bsp1286I	GDGCHC	6 cut(s)	166, 235, 244, 676, 739, 854
Bsp143I	GATC	6 cut(s)	259, 316, 499, 571, 820, 868
Bsp68I	TCGCGA	1 cut(s)	134
BspACI	CCGC	2 cut(s)	54, 539
BspANI	GGCC	3 cut(s)	5, 383, 804
BspCNI	CTCAG	5 cut(s)	159, 313, 442, 688, 967
BspFNI	CGCG	2 cut(s)	56, 134
BspLI	GGNNCC	2 cut(s)	241, 461
BspPI	GGATC	2 cut(s)	311, 507
BspQI	GCTCTTC	1 cut(s)	859
BspT104I	TTCGAA	1 cut(s)	947
BspT107I	GGYRCC	2 cut(s)	239, 459
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	3 cut(s)	105, 783, 805
BssECI	CCNNGG	2 cut(s)	384, 1014
BssMI	GATC	6 cut(s)	259, 316, 499, 571, 820, 868
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	1014
Bst4CI	ACNGT	3 cut(s)	414, 894, 937
Bst6I	CTCTTC	4 cut(s)	79, 515, 756, 859
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstBAI	YACGTR	2 cut(s)	509, 671
BstBI	TTCGAA	1 cut(s)	947
BstC8I	GCNNGC	2 cut(s)	54, 339
BstDEI	CTNAG	6 cut(s)	167, 321, 450, 675, 772, 975
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	2 cut(s)	56, 134
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	6 cut(s)	262, 319, 502, 574, 823, 871
BstMAI	GTCTC	4 cut(s)	113, 118, 199, 607
BstMBI	GATC	6 cut(s)	259, 316, 499, 571, 820, 868
BstMWI	GCNNNNNNNGC	7 cut(s)	239, 443, 476, 512, 545, 680, 689
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	2 cut(s)	244, 739
BstUI	CGCG	2 cut(s)	56, 134
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	316, 499
BstYI	RGATCY	2 cut(s)	316, 499
BsuRI	GGCC	3 cut(s)	5, 383, 804
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	776
BtuMI	TCGCGA	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	54, 339
CfoI	GCGC	1 cut(s)	439
CseI	GACGC	3 cut(s)	30, 45, 365
Csp6I	GTAC	1 cut(s)	460
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	6 cut(s)	167, 321, 450, 675, 772, 975
DpnI	GATC	6 cut(s)	261, 318, 501, 573, 822, 870
DpnII	GATC	6 cut(s)	259, 316, 499, 571, 820, 868
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	2 cut(s)	3, 802
Eam1104I	CTCTTC	4 cut(s)	79, 515, 756, 859
EarI	CTCTTC	4 cut(s)	79, 515, 756, 859
Ecl136II	GAGCTC	2 cut(s)	164, 852
Eco130I	CCWWGG	1 cut(s)	1014
Eco24I	GRGCYC	2 cut(s)	166, 854
Eco31I	GGTCTC	1 cut(s)	118
Eco53kI	GAGCTC	2 cut(s)	164, 852
Eco57I	CTGAAG	1 cut(s)	539
Eco72I	CACGTG	2 cut(s)	509, 671
EcoICRI	GAGCTC	2 cut(s)	164, 852
EcoT14I	CCWWGG	1 cut(s)	1014
EcoT38I	GRGCYC	2 cut(s)	166, 854
ErhI	CCWWGG	1 cut(s)	1014
FaiI	YATR	9 cut(s)	116, 201, 210, 248, 286, 288, 302, 429, 958
FalI	AAGNNNNNCTT	4 cut(s)	330, 362, 903, 935
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	2 cut(s)	166, 854
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	3 cut(s)	270, 824, 845
FspI	TGCGCA	1 cut(s)	438
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	5, 383, 804
HapII	CCGG	1 cut(s)	923
HgaI	GACGC	3 cut(s)	30, 45, 365
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	3 cut(s)	45, 810, 862
HindII	GTYRAC	3 cut(s)	45, 810, 862
HindIII	AAGCTT	2 cut(s)	444, 614
HinfI	GANTC	2 cut(s)	782, 971
HpaI	GTTAAC	1 cut(s)	810
HpaII	CCGG	1 cut(s)	923
Hpy166II	GTNNAC	3 cut(s)	45, 810, 862
Hpy188I	TCNGA	4 cut(s)	168, 451, 519, 976
Hpy188III	TCNNGA	4 cut(s)	121, 133, 320, 824
Hpy8I	GTNNAC	3 cut(s)	45, 810, 862
HpyAV	CCTTC	4 cut(s)	151, 204, 821, 954
HpyCH4III	ACNGT	3 cut(s)	414, 894, 937
HpyCH4IV	ACGT	3 cut(s)	223, 508, 670
HpyCH4V	TGCA	6 cut(s)	290, 296, 506, 683, 839, 875
HpyF10VI	GCNNNNNNNGC	7 cut(s)	239, 443, 476, 512, 545, 680, 689
HpyF3I	CTNAG	6 cut(s)	167, 321, 450, 675, 772, 975
HpySE526I	ACGT	3 cut(s)	223, 508, 670
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	1 cut(s)	437
KpnI	GGTACC	1 cut(s)	463
Ksp22I	TGATCA	1 cut(s)	571
KspAI	GTTAAC	1 cut(s)	810
Kzo9I	GATC	6 cut(s)	259, 316, 499, 571, 820, 868
LguI	GCTCTTC	1 cut(s)	859
LmnI	GCTCC	5 cut(s)	161, 196, 334, 946, 988
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	2 cut(s)	363, 410
MaeI	CTAG	3 cut(s)	270, 824, 845
MaeII	ACGT	3 cut(s)	223, 508, 670
MalI	GATC	6 cut(s)	261, 318, 501, 573, 822, 870
MboI	GATC	6 cut(s)	259, 316, 499, 571, 820, 868
MflI	RGATCY	2 cut(s)	316, 499
MhlI	GDGCHC	6 cut(s)	166, 235, 244, 676, 739, 854
MlsI	TGGCCA	2 cut(s)	5, 804
MluCI	AATT	4 cut(s)	211, 473, 550, 998
MluNI	TGGCCA	2 cut(s)	5, 804
MmeI	TCCRAC	1 cut(s)	396
Mox20I	TGGCCA	2 cut(s)	5, 804
MscI	TGGCCA	2 cut(s)	5, 804
MseI	TTAA	7 cut(s)	147, 483, 723, 809, 966, 993, 1001
Msp20I	TGGCCA	2 cut(s)	5, 804
MspI	CCGG	1 cut(s)	923
MvnI	CGCG	2 cut(s)	56, 134
MwoI	GCNNNNNNNGC	7 cut(s)	239, 443, 476, 512, 545, 680, 689
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	6 cut(s)	259, 316, 499, 571, 820, 868
NlaIV	GGNNCC	2 cut(s)	241, 461
NruI	TCGCGA	1 cut(s)	134
NsbI	TGCGCA	1 cut(s)	438
NspV	TTCGAA	1 cut(s)	947
PciSI	GCTCTTC	1 cut(s)	859
PfeI	GAWTC	2 cut(s)	782, 971
PkrI	GCNGC	1 cut(s)	436
PmaCI	CACGTG	2 cut(s)	509, 671
PmlI	CACGTG	2 cut(s)	509, 671
Ppu21I	YACGTR	2 cut(s)	509, 671
Psp124BI	GAGCTC	2 cut(s)	166, 854
PspCI	CACGTG	2 cut(s)	509, 671
PspN4I	GGNNCC	2 cut(s)	241, 461
PsuI	RGATCY	2 cut(s)	316, 499
RruI	TCGCGA	1 cut(s)	134
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SacI	GAGCTC	2 cut(s)	166, 854
SapI	GCTCTTC	1 cut(s)	859
SaqAI	TTAA	7 cut(s)	147, 483, 723, 809, 966, 993, 1001
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	6 cut(s)	259, 316, 499, 571, 820, 868
SduI	GDGCHC	6 cut(s)	166, 235, 244, 676, 739, 854
SfaNI	GCATC	2 cut(s)	363, 410
SfcI	CTRYAG	1 cut(s)	813
SfuI	TTCGAA	1 cut(s)	947
Sse9I	AATT	4 cut(s)	211, 473, 550, 998
SsiI	CCGC	2 cut(s)	54, 539
SspMI	CTAG	3 cut(s)	270, 824, 845
SstI	GAGCTC	2 cut(s)	166, 854
StyI	CCWWGG	1 cut(s)	1014
TaaI	ACNGT	3 cut(s)	414, 894, 937
TaiI	ACGT	3 cut(s)	226, 511, 673
TaqI	TCGA	2 cut(s)	647, 947
TasI	AATT	4 cut(s)	211, 473, 550, 998
TfiI	GAWTC	2 cut(s)	782, 971
Tru1I	TTAA	7 cut(s)	147, 483, 723, 809, 966, 993, 1001
Tru9I	TTAA	7 cut(s)	147, 483, 723, 809, 966, 993, 1001
TscAI	CASTG	1 cut(s)	783
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	5 cut(s)	51, 81, 263, 368, 1011
TspGWI	ACGGA	1 cut(s)	1021
TspRI	CASTG	1 cut(s)	783
XbaI	TCTAGA	1 cut(s)	823
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XspI	CTAG	3 cut(s)	270, 824, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.