Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001356.1

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

33800 .. 40598

Gene Structure 6799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001356.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggccaccaaattgcagatatttacaggattgaccatggcttcaactcccgcctcttcgttccaatccccgccttcttcttcctcctcatcctccaccaccctctccatggtcaggagacctctcacgacgtcgtttttcaacggcggagtgggagctctaaaagttgaagtcattagggttgctccttccaataagcgacatcattcaagacaacgtggaggtgctctcggtgcccgtatgaacctttttgaccggttttctagagttatcaagtcatatgcaaatgcaatcataagttcctttgaagatcctgagaaaatcttggagcaagcagttcttgaaatgaatgatgacttgacaaagatgcgtcaggccacagcacaggtattggcttctcaaaaacgattggaaaataagtacaaagctgcgcaacaagcgtctgaggactggtatcgaaaagcacaattagctcttcagaaaggagaggaggatcttgcacgtgaagctctgaagaggcgtaaatcttttgcggataatgctaattctttgagaacgcaacttgatcaacaaaaaggtgttgttgataatcttgtgtctaatacaaagcttttagagagcaagattcaagaagcaagatcgaaaaaagataccctcaaagcacgcgctcagtctgcaaagactgctactaaagtgagtgagatggtggggaatgtcaatacaagtagtgccctttccgcttttgacaagatggaggagaaagtcctggcaatggaatcccaagcagaagctcttggccagttaactacagacgatctggaaggaaagtttgcgatgctagagagctcttctgttgatgatgatcttgcaagcttgaagaaagaactgtctggtagttcaaagaaaggagatcttccacccggaagaactgttactcccagttcaaacaaggcatatccattcaaggattctgaaattgaaatggagcttaatgaattgagacggaaagcgcaggacttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

340

Amino Acids

37.41

Weight (kDa)

9.47

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
Acc16I	TGCGCA	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	1 cut(s)	666
AciI	CCGC	5 cut(s)	51, 71, 147, 533, 738
AclWI	GGATC	2 cut(s)	305, 501
AcoI	YGGCCR	2 cut(s)	3, 796
AcuI	CTGAAG	2 cut(s)	461, 533
AcvI	CACGTG	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	109, 114, 772
AgeI	ACCGGT	1 cut(s)	255
AjnI	CCWGG	1 cut(s)	765
AloI	GAACNNNNNNTCC	2 cut(s)	919, 951
AluBI	AGCT	9 cut(s)	158, 428, 473, 509, 610, 791, 846, 873, 988
AluI	AGCT	9 cut(s)	158, 428, 473, 509, 610, 791, 846, 873, 988
Alw21I	GWGCWC	3 cut(s)	160, 229, 848
Alw26I	GTCTC	2 cut(s)	112, 994
AlwI	GGATC	2 cut(s)	305, 501
AoxI	GGCC	3 cut(s)	3, 375, 796
ApeKI	GCWGC	1 cut(s)	428
AsiGI	ACCGGT	1 cut(s)	255
AspLEI	GCGC	3 cut(s)	433, 668, 1012
AsuC2I	CCSGG	1 cut(s)	921
BaeGI	GKGCMC	2 cut(s)	238, 733
BalI	TGGCCA	2 cut(s)	5, 798
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	2 cut(s)	160, 848
BarI	GAAGNNNNNNTAC	2 cut(s)	916, 948
BbrPI	CACGTG	1 cut(s)	503
Bbv12I	GWGCWC	3 cut(s)	160, 229, 848
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	697, 745
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	767
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	921
BcoDI	GTCTC	2 cut(s)	112, 994
BfaI	CTAG	2 cut(s)	264, 839
BfmI	CTRYAG	1 cut(s)	807
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	2 cut(s)	767, 921
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	767, 921
BmrI	ACTGGG	1 cut(s)	933
BmsI	GCATC	2 cut(s)	357, 825
BmuI	ACTGGG	1 cut(s)	933
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpuMI	CCSGG	1 cut(s)	921
BsaAI	YACGTR	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	36, 108
BsaWI	WCCGGW	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	919, 949
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 114, 772
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	3 cut(s)	455, 799, 939
Bse3DI	GCAATG	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	767
BseDI	CCNNGG	2 cut(s)	36, 108
BseGI	GGATG	1 cut(s)	89
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	3 cut(s)	109, 114, 772
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	3 cut(s)	306, 435, 683
BseNI	ACTGG	3 cut(s)	455, 799, 939
BseRI	GAGGAG	3 cut(s)	76, 503, 770
BseSI	GKGCMC	2 cut(s)	238, 733
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	666
BshFI	GGCC	3 cut(s)	5, 377, 798
BshNI	GGYRCC	1 cut(s)	233
BshTI	ACCGGT	1 cut(s)	255
BsiHKAI	GWGCWC	3 cut(s)	160, 229, 848
BsiSI	CCGG	2 cut(s)	256, 921
BslI	CCNNNNNNNGG	3 cut(s)	109, 114, 772
BsmAI	GTCTC	2 cut(s)	112, 994
BsmBI	CGTCTC	1 cut(s)	994
BsnI	GGCC	3 cut(s)	5, 377, 798
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	5 cut(s)	160, 229, 238, 733, 848
Bsp143I	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
Bsp19I	CCATGG	2 cut(s)	36, 108
BspACI	CCGC	5 cut(s)	51, 71, 147, 533, 738
BspANI	GGCC	3 cut(s)	5, 377, 798
BspCNI	CTCAG	3 cut(s)	307, 436, 682
BspFNI	CGCG	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	305, 501
BspQI	GCTCTTC	2 cut(s)	480, 853
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	455, 799, 939
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	36, 108
BssMI	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	2 cut(s)	36, 108
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	2 cut(s)	888, 931
Bst6I	CTCTTC	4 cut(s)	61, 480, 509, 853
BstACI	GRCGYC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	333, 664, 871
BstDEI	CTNAG	3 cut(s)	315, 444, 669
BstDSI	CCRYGG	2 cut(s)	36, 108
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	666
BstHHI	GCGC	3 cut(s)	433, 668, 1012
BstKTI	GATC	7 cut(s)	313, 496, 568, 641, 817, 865, 913
BstMAI	GTCTC	2 cut(s)	112, 994
BstMBI	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
BstMWI	GCNNNNNNNGC	8 cut(s)	233, 437, 470, 506, 539, 674, 683, 737
BstNI	CCWGG	1 cut(s)	767
BstSCI	CCNGG	2 cut(s)	765, 919
BstSFI	CTRYAG	1 cut(s)	807
BstSLI	GKGCMC	2 cut(s)	238, 733
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	3 cut(s)	310, 493, 910
BstYI	RGATCY	3 cut(s)	310, 493, 910
BsuRI	GGCC	3 cut(s)	5, 377, 798
BtgI	CCRYGG	2 cut(s)	36, 108
BtgZI	GCGATG	1 cut(s)	848
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	3 cut(s)	333, 664, 871
CfoI	GCGC	3 cut(s)	433, 668, 1012
Cfr10I	RCCGGY	1 cut(s)	255
CseI	GACGC	2 cut(s)	359, 429
Csp6I	GTAC	1 cut(s)	421
CspAI	ACCGGT	1 cut(s)	255
CviAII	CATG	2 cut(s)	37, 109
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	3 cut(s)	315, 444, 669
DpnI	GATC	7 cut(s)	312, 495, 567, 640, 816, 864, 912
DpnII	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
EaeI	YGGCCR	2 cut(s)	3, 796
Eam1104I	CTCTTC	4 cut(s)	61, 480, 509, 853
EarI	CTCTTC	4 cut(s)	61, 480, 509, 853
EciI	GGCGGA	1 cut(s)	162
Ecl136II	GAGCTC	2 cut(s)	158, 846
Eco130I	CCWWGG	2 cut(s)	36, 108
Eco24I	GRGCYC	2 cut(s)	160, 848
Eco31I	GGTCTC	1 cut(s)	112
Eco53kI	GAGCTC	2 cut(s)	158, 846
Eco57I	CTGAAG	2 cut(s)	461, 533
Eco72I	CACGTG	1 cut(s)	503
EcoICRI	GAGCTC	2 cut(s)	158, 846
EcoRII	CCWGG	1 cut(s)	765
EcoT14I	CCWWGG	2 cut(s)	36, 108
EcoT38I	GRGCYC	2 cut(s)	160, 848
ErhI	CCWWGG	2 cut(s)	36, 108
Esp3I	CGTCTC	1 cut(s)	994
FaeI	CATG	2 cut(s)	40, 112
FaiI	YATR	7 cut(s)	38, 110, 242, 280, 282, 296, 955
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 897, 929
FatI	CATG	2 cut(s)	36, 108
FauI	CCCGC	2 cut(s)	58, 78
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	2 cut(s)	160, 848
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	264, 839
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	3 cut(s)	432, 667, 1011
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	5, 377, 798
HapII	CCGG	2 cut(s)	256, 921
HgaI	GACGC	2 cut(s)	359, 429
HhaI	GCGC	3 cut(s)	433, 668, 1012
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	40, 112
Hin6I	GCGC	3 cut(s)	431, 666, 1010
HinP1I	GCGC	3 cut(s)	431, 666, 1010
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HindIII	AAGCTT	2 cut(s)	608, 871
HinfI	GANTC	3 cut(s)	625, 776, 968
HpaI	GTTAAC	1 cut(s)	804
HpaII	CCGG	2 cut(s)	256, 921
Hpy166II	GTNNAC	1 cut(s)	804
Hpy188I	TCNGA	4 cut(s)	445, 480, 513, 973
Hpy188III	TCNNGA	8 cut(s)	115, 127, 210, 264, 314, 341, 629, 818
Hpy8I	GTNNAC	1 cut(s)	804
Hpy99I	CGWCG	2 cut(s)	133, 136
HpyAV	CCTTC	3 cut(s)	84, 198, 815
HpyCH4III	ACNGT	2 cut(s)	888, 931
HpyCH4IV	ACGT	3 cut(s)	131, 217, 502
HpyCH4V	TGCA	6 cut(s)	16, 284, 290, 500, 677, 869
HpyF10VI	GCNNNNNNNGC	8 cut(s)	233, 437, 470, 506, 539, 674, 683, 737
HpyF3I	CTNAG	3 cut(s)	315, 444, 669
HpySE526I	ACGT	3 cut(s)	131, 217, 502
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	40, 112
HspAI	GCGC	3 cut(s)	431, 666, 1010
Ksp22I	TGATCA	1 cut(s)	565
KspAI	GTTAAC	1 cut(s)	804
Kzo9I	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
LguI	GCTCTTC	2 cut(s)	480, 853
LmnI	GCTCC	4 cut(s)	155, 190, 328, 985
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	357, 825
MaeI	CTAG	2 cut(s)	264, 839
MaeII	ACGT	3 cut(s)	131, 217, 502
MaeIII	GTNAC	1 cut(s)	931
MalI	GATC	7 cut(s)	312, 495, 567, 640, 816, 864, 912
MboI	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
MflI	RGATCY	3 cut(s)	310, 493, 910
MhlI	GDGCHC	5 cut(s)	160, 229, 238, 733, 848
MlsI	TGGCCA	2 cut(s)	5, 798
MluCI	AATT	5 cut(s)	11, 467, 544, 975, 995
MluNI	TGGCCA	2 cut(s)	5, 798
Mox20I	TGGCCA	2 cut(s)	5, 798
MscI	TGGCCA	2 cut(s)	5, 798
MseI	TTAA	2 cut(s)	803, 990
Msp20I	TGGCCA	2 cut(s)	5, 798
MspI	CCGG	2 cut(s)	256, 921
MspR9I	CCNGG	2 cut(s)	767, 921
MvaI	CCWGG	1 cut(s)	767
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	8 cut(s)	233, 437, 470, 506, 539, 674, 683, 737
NciI	CCSGG	1 cut(s)	921
NcoI	CCATGG	2 cut(s)	36, 108
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
NlaIII	CATG	2 cut(s)	40, 112
NlaIV	GGNNCC	1 cut(s)	235
NsbI	TGCGCA	1 cut(s)	432
PciSI	GCTCTTC	2 cut(s)	480, 853
PfeI	GAWTC	3 cut(s)	625, 776, 968
PinAI	ACCGGT	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	430
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	503
Psp124BI	GAGCTC	2 cut(s)	160, 848
Psp6I	CCWGG	1 cut(s)	765
PspCI	CACGTG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	765
PspN4I	GGNNCC	1 cut(s)	235
PsuI	RGATCY	3 cut(s)	310, 493, 910
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SacI	GAGCTC	2 cut(s)	160, 848
SapI	GCTCTTC	2 cut(s)	480, 853
SaqAI	TTAA	2 cut(s)	803, 990
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	7 cut(s)	310, 493, 565, 638, 814, 862, 910
ScrFI	CCNGG	2 cut(s)	767, 921
SduI	GDGCHC	5 cut(s)	160, 229, 238, 733, 848
SfaNI	GCATC	2 cut(s)	357, 825
SfcI	CTRYAG	1 cut(s)	807
Sse9I	AATT	5 cut(s)	11, 467, 544, 975, 995
SsiI	CCGC	5 cut(s)	51, 71, 147, 533, 738
SspMI	CTAG	2 cut(s)	264, 839
SstI	GAGCTC	2 cut(s)	160, 848
StyD4I	CCNGG	2 cut(s)	765, 919
StyI	CCWWGG	2 cut(s)	36, 108
TaaI	ACNGT	2 cut(s)	888, 931
TaiI	ACGT	3 cut(s)	134, 220, 505
TaqI	TCGA	2 cut(s)	457, 641
TasI	AATT	5 cut(s)	11, 467, 544, 975, 995
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	3 cut(s)	625, 776, 968
Tru1I	TTAA	2 cut(s)	803, 990
Tru9I	TTAA	2 cut(s)	803, 990
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	257, 362, 1008
TspGWI	ACGGA	1 cut(s)	1018
XbaI	TCTAGA	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	2 cut(s)	264, 839
ZraI	GACGTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.