Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

20510436 .. 20516394

Gene Structure 5959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCCACGAAATTGCAGATATTTACCGGATTGACCATGGCTTCAACTCCCGCCTCTTCGTTCCAATCCCCGCCTTCTTCCTCATCCTCCACCACCCTCTCCATGGTCAGGAGACCTCTCACGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTGAAGTCATTAGGGTTGCTCCTTCCAATAAGCGACATCATTCGAGACAACGTGGAGGTGCTCTCGGTGCCCGTATGAACCTTTTTGACCGGTTTTCTAGAGTTGTCAAGTCATATGCAAATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAATCTTGGAGCAAGCAGTTCTTGAAATGAATGATGACTTGACAAAGATGCGTCAGGCCACAGCACAGGTATTGGCTTCTCAAAAACGATTGGAAAATAAGTACAAAGCTGCGCAACAAGCTTCTGAGGACTGGTATCGAAAAGCACAATTAGCTCTTCAGAAAGGAGAGGAGGATCTTGCACGTGAAGCTCTGAAGAGGCGTAAATCTTTTGCGGATAATGCTAATTCTTTGAGAACGCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTGTCTAATACAAAGCTTTTAGAGAGCAAGATACAAGAGGCAAGATCGAAAAAAGATACCCTCAAAGCACGCGCTCAGTCTGCAAAGACTGCTACTAAAGTGAGTGAGATGGTGGGGAATGTCAATACAAGTAGTGCTCTTTCCGCTTTTGACAAGATGGAGGAGAAAGTCCTGGCAATGGAATCCCAAGCAGAAGCTCTTGGCCAGTTAACTACAGACGATCTGGAAGGAAAGTTTGCGATGCTAGAGAGCTCTTCTGTTGATGATGATCTTGCAAGCTTGAAGAAAGAACTGTCTGGTAGTTCAAAGAAAGGAGATCTTCCACCCGGAAGAACTGTTACTCCCAGTTCAAACAAGGCATATCCATTCAAGGATTCTGAAATTGAAATGGAGCTTAATGAATTGAGACGGAAAGCGCAGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

339

Amino Acids

37.23

Weight (kDa)

9.47

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	80 - 293	1.6e-53	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	128
Acc16I	TGCGCA	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	1 cut(s)	660
AciI	CCGC	5 cut(s)	51, 71, 141, 527, 732
AclWI	GGATC	2 cut(s)	299, 495
AcoI	YGGCCR	2 cut(s)	3, 790
AcuI	CTGAAG	2 cut(s)	455, 527
AcvI	CACGTG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	103, 108, 766
AgeI	ACCGGT	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	759
AloI	GAACNNNNNNTCC	2 cut(s)	913, 945
Alw21I	GWGCWC	4 cut(s)	154, 223, 727, 842
Alw26I	GTCTC	3 cut(s)	106, 199, 988
AlwI	GGATC	2 cut(s)	299, 495
AoxI	GGCC	3 cut(s)	3, 369, 790
ApeKI	GCWGC	1 cut(s)	422
AsiGI	ACCGGT	1 cut(s)	249
AspLEI	GCGC	3 cut(s)	427, 662, 1006
AsuC2I	CCSGG	1 cut(s)	915
BaeGI	GKGCMC	1 cut(s)	232
BalI	TGGCCA	2 cut(s)	5, 792
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	154, 842
BarI	GAAGNNNNNNTAC	2 cut(s)	910, 942
BbrPI	CACGTG	1 cut(s)	497
Bbv12I	GWGCWC	4 cut(s)	154, 223, 727, 842
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	691, 739
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	761
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	915
BcoDI	GTCTC	3 cut(s)	106, 199, 988
BfaI	CTAG	2 cut(s)	258, 833
BfmI	CTRYAG	1 cut(s)	801
BglII	AGATCT	1 cut(s)	904
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	761, 915
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	761, 915
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	2 cut(s)	351, 819
BmuI	ACTGGG	1 cut(s)	927
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
BpuMI	CCSGG	1 cut(s)	915
BsaAI	YACGTR	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	36, 102
BsaWI	WCCGGW	2 cut(s)	26, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	913, 943
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 108, 766
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	3 cut(s)	449, 793, 933
Bse3DI	GCAATG	1 cut(s)	771
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	2 cut(s)	36, 102
BseGI	GGATG	1 cut(s)	83
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	3 cut(s)	103, 108, 766
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	3 cut(s)	300, 429, 677
BseNI	ACTGG	3 cut(s)	449, 793, 933
BseRI	GAGGAG	2 cut(s)	497, 764
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	3 cut(s)	5, 371, 792
BshNI	GGYRCC	1 cut(s)	227
BshTI	ACCGGT	1 cut(s)	249
BsiHKAI	GWGCWC	4 cut(s)	154, 223, 727, 842
BsiSI	CCGG	3 cut(s)	27, 250, 915
BslI	CCNNNNNNNGG	3 cut(s)	103, 108, 766
BsmAI	GTCTC	3 cut(s)	106, 199, 988
BsmBI	CGTCTC	1 cut(s)	988
BsnI	GGCC	3 cut(s)	5, 371, 792
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	5 cut(s)	154, 223, 232, 727, 842
Bsp143I	GATC	7 cut(s)	304, 487, 559, 632, 808, 856, 904
Bsp19I	CCATGG	2 cut(s)	36, 102
BspACI	CCGC	5 cut(s)	51, 71, 141, 527, 732
BspANI	GGCC	3 cut(s)	5, 371, 792
BspCNI	CTCAG	3 cut(s)	301, 430, 676
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	2 cut(s)	299, 495
BspQI	GCTCTTC	2 cut(s)	474, 847
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	771
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	449, 793, 933
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	36, 102
BssMI	GATC	7 cut(s)	304, 487, 559, 632, 808, 856, 904
BssNI	GRCGYC	1 cut(s)	125
BssT1I	CCWWGG	2 cut(s)	36, 102
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	2 cut(s)	882, 925
Bst6I	CTCTTC	4 cut(s)	61, 474, 503, 847
BstACI	GRCGYC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	3 cut(s)	327, 658, 865
BstDEI	CTNAG	3 cut(s)	309, 438, 663
BstDSI	CCRYGG	2 cut(s)	36, 102
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	660
BstHHI	GCGC	3 cut(s)	427, 662, 1006
BstKTI	GATC	7 cut(s)	307, 490, 562, 635, 811, 859, 907
BstMAI	GTCTC	3 cut(s)	106, 199, 988
BstMBI	GATC	7 cut(s)	304, 487, 559, 632, 808, 856, 904
BstMWI	GCNNNNNNNGC	8 cut(s)	227, 431, 464, 500, 533, 668, 677, 731
BstNI	CCWGG	1 cut(s)	761
BstSCI	CCNGG	2 cut(s)	759, 913
BstSFI	CTRYAG	1 cut(s)	801
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	3 cut(s)	304, 487, 904
BstYI	RGATCY	3 cut(s)	304, 487, 904
BsuRI	GGCC	3 cut(s)	5, 371, 792
BtgI	CCRYGG	2 cut(s)	36, 102
BtgZI	GCGATG	1 cut(s)	842
BtsCI	GGATG	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	327, 658, 865
CfoI	GCGC	3 cut(s)	427, 662, 1006
Cfr10I	RCCGGY	1 cut(s)	249
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	415
CspAI	ACCGGT	1 cut(s)	249
CviAII	CATG	2 cut(s)	37, 103
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	309, 438, 663
DpnI	GATC	7 cut(s)	306, 489, 561, 634, 810, 858, 906
DpnII	GATC	7 cut(s)	304, 487, 559, 632, 808, 856, 904
EaeI	YGGCCR	2 cut(s)	3, 790
Eam1104I	CTCTTC	4 cut(s)	61, 474, 503, 847
EarI	CTCTTC	4 cut(s)	61, 474, 503, 847
EciI	GGCGGA	1 cut(s)	156
Ecl136II	GAGCTC	2 cut(s)	152, 840
Eco130I	CCWWGG	2 cut(s)	36, 102
Eco24I	GRGCYC	2 cut(s)	154, 842
Eco31I	GGTCTC	1 cut(s)	106
Eco53kI	GAGCTC	2 cut(s)	152, 840
Eco57I	CTGAAG	2 cut(s)	455, 527
Eco72I	CACGTG	1 cut(s)	497
EcoICRI	GAGCTC	2 cut(s)	152, 840
EcoRII	CCWGG	1 cut(s)	759
EcoT14I	CCWWGG	2 cut(s)	36, 102
EcoT38I	GRGCYC	2 cut(s)	154, 842
ErhI	CCWWGG	2 cut(s)	36, 102
Esp3I	CGTCTC	1 cut(s)	988
FaeI	CATG	2 cut(s)	40, 106
FaiI	YATR	7 cut(s)	38, 104, 236, 274, 276, 290, 949
FalI	AAGNNNNNCTT	4 cut(s)	318, 350, 891, 923
FatI	CATG	2 cut(s)	36, 102
FauI	CCCGC	2 cut(s)	58, 78
FauNDI	CATATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	2 cut(s)	154, 842
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	2 cut(s)	258, 833
FspI	TGCGCA	1 cut(s)	426
GlaI	GCGC	3 cut(s)	426, 661, 1005
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	3 cut(s)	5, 371, 792
HapII	CCGG	3 cut(s)	27, 250, 915
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	3 cut(s)	427, 662, 1006
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	40, 106
Hin6I	GCGC	3 cut(s)	425, 660, 1004
HinP1I	GCGC	3 cut(s)	425, 660, 1004
HincII	GTYRAC	1 cut(s)	798
HindII	GTYRAC	1 cut(s)	798
HindIII	AAGCTT	3 cut(s)	432, 602, 865
HinfI	GANTC	2 cut(s)	770, 962
HpaI	GTTAAC	1 cut(s)	798
HpaII	CCGG	3 cut(s)	27, 250, 915
Hpy166II	GTNNAC	1 cut(s)	798
Hpy188I	TCNGA	4 cut(s)	439, 474, 507, 967
Hpy188III	TCNNGA	7 cut(s)	109, 121, 204, 258, 308, 335, 812
Hpy8I	GTNNAC	1 cut(s)	798
Hpy99I	CGWCG	2 cut(s)	127, 130
HpyAV	CCTTC	3 cut(s)	84, 192, 809
HpyCH4III	ACNGT	2 cut(s)	882, 925
HpyCH4IV	ACGT	3 cut(s)	125, 211, 496
HpyCH4V	TGCA	6 cut(s)	16, 278, 284, 494, 671, 863
HpyF10VI	GCNNNNNNNGC	8 cut(s)	227, 431, 464, 500, 533, 668, 677, 731
HpyF3I	CTNAG	3 cut(s)	309, 438, 663
HpySE526I	ACGT	3 cut(s)	125, 211, 496
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	40, 106
HspAI	GCGC	3 cut(s)	425, 660, 1004
Ksp22I	TGATCA	1 cut(s)	559
KspAI	GTTAAC	1 cut(s)	798
Kzo9I	GATC	7 cut(s)	304, 487, 559, 632, 808, 856, 904
LguI	GCTCTTC	2 cut(s)	474, 847
LmnI	GCTCC	4 cut(s)	149, 184, 322, 979
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	2 cut(s)	351, 819
MaeI	CTAG	2 cut(s)	258, 833
MaeII	ACGT	3 cut(s)	125, 211, 496
MaeIII	GTNAC	1 cut(s)	925
MalI	GATC	7 cut(s)	306, 489, 561, 634, 810, 858, 906
MboI	GATC	7 cut(s)	304, 487, 559, 632, 808, 856, 904
MboII	GAAGA	9 cut(s)	48, 69, 314, 461, 520, 834, 883, 899, 930
MflI	RGATCY	3 cut(s)	304, 487, 904
MhlI	GDGCHC	5 cut(s)	154, 223, 232, 727, 842
MlsI	TGGCCA	2 cut(s)	5, 792
MluCI	AATT	5 cut(s)	11, 461, 538, 969, 989
MluNI	TGGCCA	2 cut(s)	5, 792
Mox20I	TGGCCA	2 cut(s)	5, 792
MscI	TGGCCA	2 cut(s)	5, 792
MseI	TTAA	2 cut(s)	797, 984
Msp20I	TGGCCA	2 cut(s)	5, 792
MspI	CCGG	3 cut(s)	27, 250, 915
MspR9I	CCNGG	2 cut(s)	761, 915
MvaI	CCWGG	1 cut(s)	761
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	8 cut(s)	227, 431, 464, 500, 533, 668, 677, 731
NciI	CCSGG	1 cut(s)	915
NcoI	CCATGG	2 cut(s)	36, 102
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	7 cut(s)	304, 487, 559, 632, 808, 856, 904
NlaIII	CATG	2 cut(s)	40, 106
NlaIV	GGNNCC	1 cut(s)	229
NsbI	TGCGCA	1 cut(s)	426
PciSI	GCTCTTC	2 cut(s)	474, 847
PfeI	GAWTC	2 cut(s)	770, 962
PinAI	ACCGGT	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	424
PmaCI	CACGTG	1 cut(s)	497
PmlI	CACGTG	1 cut(s)	497
Ppu21I	YACGTR	1 cut(s)	497
Psp124BI	GAGCTC	2 cut(s)	154, 842
Psp6I	CCWGG	1 cut(s)	759
PspCI	CACGTG	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	759
PspN4I	GGNNCC	1 cut(s)	229
PsuI	RGATCY	3 cut(s)	304, 487, 904
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SacI	GAGCTC	2 cut(s)	154, 842
SapI	GCTCTTC	2 cut(s)	474, 847
SaqAI	TTAA	2 cut(s)	797, 984
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	7 cut(s)	304, 487, 559, 632, 808, 856, 904
ScrFI	CCNGG	2 cut(s)	761, 915
SduI	GDGCHC	5 cut(s)	154, 223, 232, 727, 842
SfaNI	GCATC	2 cut(s)	351, 819
SfcI	CTRYAG	1 cut(s)	801
Sse9I	AATT	5 cut(s)	11, 461, 538, 969, 989
SsiI	CCGC	5 cut(s)	51, 71, 141, 527, 732
SspMI	CTAG	2 cut(s)	258, 833
SstI	GAGCTC	2 cut(s)	154, 842
StyD4I	CCNGG	2 cut(s)	759, 913
StyI	CCWWGG	2 cut(s)	36, 102
TaaI	ACNGT	2 cut(s)	882, 925
TaiI	ACGT	3 cut(s)	128, 214, 499
TaqI	TCGA	3 cut(s)	203, 451, 635
TasI	AATT	5 cut(s)	11, 461, 538, 969, 989
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	770, 962
Tru1I	TTAA	2 cut(s)	797, 984
Tru9I	TTAA	2 cut(s)	797, 984
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	3 cut(s)	251, 356, 1002
TspGWI	ACGGA	1 cut(s)	1012
XbaI	TCTAGA	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	2 cut(s)	258, 833
ZraI	GACGTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.