Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

21737890 .. 21738348

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG196000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCACGAAATCGCAGATTTTTATAGGGATGTCCACGGCATCAATGCCCACCTCTTCTTCTTCATCCTCTACCACTCTCTCTATGATCAGAAGACCTCTCACGACGTCGTTCTATAACGGCGGAGTGGGAGCTATAAAACTTGAAACGATTAGGGTTGCTCCTTCCAATAAGCAAAATCAATTCAGACAACGGGGAACTGCTTTTGTTGCTCGTATGAACCTTATCGACCGGTTTGCTATGGTCATCAAGTCATATGCAAATGCAATCATGTCTTCATTTGAAGATCCTGAGAAGATCTTGGAGCAAGCAGTTCTTGAAATGAACGATGACTTGATGAAGATGCGACAGGCCACAGCACAAGTATTGGCATCTCAAAAAAGGCTGGAAAACAAGTATGAAGCTGCGCAACAGGCTTCGGAGAACTGGTACCGAAAAGCACAACTAGCTGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

152

Amino Acids

17.0

Weight (kDa)

9.99

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	75 - 150	1.2e-17	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
Acc16I	TGCGCA	1 cut(s)	408
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	429
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	431
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	146, 284, 320
AluBI	AGCT	3 cut(s)	134, 404, 449
AluI	AGCT	3 cut(s)	134, 404, 449
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	3, 351
ApeKI	GCWGC	1 cut(s)	404
AsiGI	ACCGGT	1 cut(s)	231
Asp718I	GGTACC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	429
BbsI	GAAGAC	2 cut(s)	100, 267
BbvI	GCAGC	1 cut(s)	391
BceAI	ACGGC	2 cut(s)	54, 136
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BclI	TGATCA	1 cut(s)	87
BfaI	CTAG	1 cut(s)	446
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	431
BmsI	GCATC	3 cut(s)	50, 333, 380
BpiI	GAAGAC	2 cut(s)	100, 267
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	36, 65
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	391
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	5, 353
BshNI	GGYRCC	1 cut(s)	429
BshTI	ACCGGT	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	232
BsnI	GGCC	2 cut(s)	5, 353
Bsp143I	GATC	3 cut(s)	87, 286, 297
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	5, 353
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	3 cut(s)	87, 286, 297
BssNI	GRCGYC	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	36, 65
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	90, 289, 300
BstMBI	GATC	3 cut(s)	87, 286, 297
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 413, 446
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	2 cut(s)	100, 267
BstX2I	RGATCY	2 cut(s)	286, 297
BstYI	RGATCY	2 cut(s)	286, 297
BsuRI	GGCC	2 cut(s)	5, 353
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	36, 65
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	430
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	7 cut(s)	5, 134, 353, 385, 404, 416, 449
CviKI_1	RGCY	7 cut(s)	5, 134, 353, 385, 404, 416, 449
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	3 cut(s)	89, 288, 299
DpnII	GATC	3 cut(s)	87, 286, 297
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	138
FaeI	CATG	1 cut(s)	274
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	1 cut(s)	270
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	2 cut(s)	43, 52
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	446
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	5, 353
HapII	CCGG	1 cut(s)	232
HhaI	GCGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HpaII	CCGG	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	3 cut(s)	92, 188, 421
Hpy188III	TCNNGA	3 cut(s)	103, 290, 317
Hpy8I	GTNNAC	1 cut(s)	36
Hpy99I	CGWCG	2 cut(s)	109, 112
HpyAV	CCTTC	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	260, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 413, 446
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	107
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	407
KpnI	GGTACC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	87, 286, 297
LmnI	GCTCC	3 cut(s)	131, 166, 304
LpnPI	CCDG	6 cut(s)	245, 303, 335, 371, 398, 412
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	3 cut(s)	50, 333, 380
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	107
MalI	GATC	3 cut(s)	89, 288, 299
MboI	GATC	3 cut(s)	87, 286, 297
MboII	GAAGA	8 cut(s)	48, 51, 54, 105, 267, 296, 307, 352
MflI	RGATCY	2 cut(s)	286, 297
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	64, 79, 108
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	209, 413, 446
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	3 cut(s)	87, 286, 297
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	431
NsbI	TGCGCA	1 cut(s)	408
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	431
PsuI	RGATCY	2 cut(s)	286, 297
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	3 cut(s)	87, 286, 297
SetI	ASST	7 cut(s)	56, 100, 110, 136, 225, 406, 451
SfaNI	GCATC	3 cut(s)	50, 333, 380
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	446
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	6 cut(s)	54, 233, 267, 338, 353, 414
XspI	CTAG	1 cut(s)	446
ZraI	GACGTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.