Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003832.1

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

111371 .. 118514

Gene Structure 7144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003832.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggccacaaaatcgcagatatttacaggattgacaatggcgtcaacaacgcccgcgtcttcattccaagcctcttcttcttcttcttcatcatcctccaccagtctctctatggtcaggagacctctcgcgacctccttctttaatggtggagtgggagctctgagagttgaagtgattaaggtcgctccttcctataagagacataattttagacaacgtggaggtgctcttggtgcccgtatgaacctttttgatcggtttgctagagttttgaagtcatatgcaaatgcactcataagttcctttgaagatcctgagaaaatcttggagcaagcagtccttgaaatgaatgatgacttgacgaagatgcgtcaggccacagcacaagtattggcatctcaaaaacggttggaaaataagtataaagctgcgcaacaagcttctgaggaatggtaccgaaaagcacaattagctcttaaaaaaggagaggaggatcttgcacgtgaagctctgaagaggcgtaaatcttttgcggataatgctaattctttgaaaactcaacttgatcaacaaaaaggtgttgttgataatcttgtctctaatacaaagcttttagagaacaagatacaagaagcaaggtcgaaaaaagataccctcaaagcacgtgctcagtctgcaaagactgctaataaagtgagtgagatggtggggaatgttaatacaagtagtgccctttccgcttttgaaaagatggaagagaaagtcttagcactggaatcccaagcagaagctcttggccagttaactacagatgatctagaaggaaagtttgcaatgctagagagctcttctgttgacgatgatcttgcaaacttgaagaaagaactgtctggtagttcaaagaaaggagagcttccggctggaagaactgttgctccttcgaacaaggcatatccatttaaggattctgagattgagatggagcttaatgaattaagacggagagccaaggacttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

340

Amino Acids

37.43

Weight (kDa)

9.55

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
Acc16I	TGCGCA	1 cut(s)	435
Acc65I	GGTACC	1 cut(s)	456
AccB1I	GGYRCC	2 cut(s)	236, 456
AccII	CGCG	2 cut(s)	56, 131
AciI	CCGC	3 cut(s)	54, 536, 741
AclWI	GGATC	2 cut(s)	308, 504
AcoI	YGGCCR	2 cut(s)	3, 799
AcuI	CTGAAG	1 cut(s)	536
AcvI	CACGTG	2 cut(s)	506, 668
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	458
AgsI	TTSAA	8 cut(s)	173, 277, 311, 347, 556, 749, 880, 903
AloI	GAACNNNNNNTCC	2 cut(s)	922, 954
Alw21I	GWGCWC	4 cut(s)	163, 232, 673, 851
Alw26I	GTCTC	4 cut(s)	110, 115, 196, 604
AlwI	GGATC	2 cut(s)	308, 504
AoxI	GGCC	3 cut(s)	3, 378, 799
ApeKI	GCWGC	1 cut(s)	431
Asp718I	GGTACC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	436
AsuII	TTCGAA	1 cut(s)	944
BaeGI	GKGCMC	2 cut(s)	241, 736
BalI	TGGCCA	2 cut(s)	5, 801
BanI	GGYRCC	2 cut(s)	236, 456
BanII	GRGCYC	2 cut(s)	163, 851
BbrPI	CACGTG	2 cut(s)	506, 668
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	4 cut(s)	163, 232, 673, 851
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	3 cut(s)	700, 748, 976
BcgI	CGANNNNNNTGC	2 cut(s)	851, 885
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	4 cut(s)	110, 115, 196, 604
BfaI	CTAG	3 cut(s)	267, 821, 842
BfmI	CTRYAG	1 cut(s)	810
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	238, 458
BmsI	GCATC	2 cut(s)	360, 407
BpiI	GAAGAC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	944
BsaAI	YACGTR	2 cut(s)	506, 668
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	1011
BsaXI	ACNNNNNCTCC	2 cut(s)	922, 952
Bse1I	ACTGG	3 cut(s)	102, 780, 802
Bse3DI	GCAATG	1 cut(s)	843
BseDI	CCNNGG	1 cut(s)	1011
BseGI	GGATG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	5 cut(s)	155, 309, 438, 686, 963
BseNI	ACTGG	3 cut(s)	102, 780, 802
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	2 cut(s)	241, 736
BseXI	GCAGC	1 cut(s)	418
Bsh1236I	CGCG	2 cut(s)	56, 131
BshFI	GGCC	3 cut(s)	5, 380, 801
BshNI	GGYRCC	2 cut(s)	236, 456
BsiHKAI	GWGCWC	4 cut(s)	163, 232, 673, 851
BsiSI	CCGG	1 cut(s)	920
BsmAI	GTCTC	4 cut(s)	110, 115, 196, 604
BsnI	GGCC	3 cut(s)	5, 380, 801
Bso31I	GGTCTC	1 cut(s)	115
Bsp119I	TTCGAA	1 cut(s)	944
Bsp1286I	GDGCHC	6 cut(s)	163, 232, 241, 673, 736, 851
Bsp143I	GATC	6 cut(s)	256, 313, 496, 568, 817, 865
Bsp68I	TCGCGA	1 cut(s)	131
BspACI	CCGC	3 cut(s)	54, 536, 741
BspANI	GGCC	3 cut(s)	5, 380, 801
BspCNI	CTCAG	5 cut(s)	156, 310, 439, 685, 964
BspFNI	CGCG	2 cut(s)	56, 131
BspLI	GGNNCC	2 cut(s)	238, 458
BspPI	GGATC	2 cut(s)	308, 504
BspQI	GCTCTTC	1 cut(s)	856
BspT104I	TTCGAA	1 cut(s)	944
BspT107I	GGYRCC	2 cut(s)	236, 456
BspTNI	GGTCTC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	843
BsrI	ACTGG	3 cut(s)	102, 780, 802
BssECI	CCNNGG	1 cut(s)	1011
BssMI	GATC	6 cut(s)	256, 313, 496, 568, 817, 865
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	1011
Bst4CI	ACNGT	3 cut(s)	411, 891, 934
Bst6I	CTCTTC	4 cut(s)	79, 512, 753, 856
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstBAI	YACGTR	2 cut(s)	506, 668
BstBI	TTCGAA	1 cut(s)	944
BstC8I	GCNNGC	2 cut(s)	54, 336
BstDEI	CTNAG	6 cut(s)	164, 318, 447, 672, 769, 972
BstF5I	GGATG	1 cut(s)	92
BstFNI	CGCG	2 cut(s)	56, 131
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	6 cut(s)	259, 316, 499, 571, 820, 868
BstMAI	GTCTC	4 cut(s)	110, 115, 196, 604
BstMBI	GATC	6 cut(s)	256, 313, 496, 568, 817, 865
BstMWI	GCNNNNNNNGC	8 cut(s)	236, 440, 473, 509, 542, 677, 686, 740
BstSFI	CTRYAG	1 cut(s)	810
BstSLI	GKGCMC	2 cut(s)	241, 736
BstUI	CGCG	2 cut(s)	56, 131
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	313, 496
BstYI	RGATCY	2 cut(s)	313, 496
BsuRI	GGCC	3 cut(s)	5, 380, 801
BtsCI	GGATG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	773
BtuMI	TCGCGA	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	54, 336
CfoI	GCGC	1 cut(s)	436
CseI	GACGC	3 cut(s)	30, 45, 362
Csp6I	GTAC	1 cut(s)	457
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	6 cut(s)	164, 318, 447, 672, 769, 972
DpnI	GATC	6 cut(s)	258, 315, 498, 570, 819, 867
DpnII	GATC	6 cut(s)	256, 313, 496, 568, 817, 865
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	2 cut(s)	3, 799
Eam1104I	CTCTTC	4 cut(s)	79, 512, 753, 856
EarI	CTCTTC	4 cut(s)	79, 512, 753, 856
Ecl136II	GAGCTC	2 cut(s)	161, 849
Eco130I	CCWWGG	1 cut(s)	1011
Eco24I	GRGCYC	2 cut(s)	163, 851
Eco31I	GGTCTC	1 cut(s)	115
Eco53kI	GAGCTC	2 cut(s)	161, 849
Eco57I	CTGAAG	1 cut(s)	536
Eco72I	CACGTG	2 cut(s)	506, 668
EcoICRI	GAGCTC	2 cut(s)	161, 849
EcoT14I	CCWWGG	1 cut(s)	1011
EcoT38I	GRGCYC	2 cut(s)	163, 851
ErhI	CCWWGG	1 cut(s)	1011
FaiI	YATR	9 cut(s)	113, 198, 207, 245, 283, 285, 299, 426, 955
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 900, 932
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	79
FriOI	GRGCYC	2 cut(s)	163, 851
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	3 cut(s)	267, 821, 842
FspI	TGCGCA	1 cut(s)	435
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	5, 380, 801
HapII	CCGG	1 cut(s)	920
HgaI	GACGC	3 cut(s)	30, 45, 362
HhaI	GCGC	1 cut(s)	436
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	3 cut(s)	45, 807, 859
HindII	GTYRAC	3 cut(s)	45, 807, 859
HindIII	AAGCTT	2 cut(s)	441, 611
HinfI	GANTC	2 cut(s)	779, 968
HpaI	GTTAAC	1 cut(s)	807
HpaII	CCGG	1 cut(s)	920
Hpy166II	GTNNAC	3 cut(s)	45, 807, 859
Hpy188I	TCNGA	4 cut(s)	165, 448, 516, 973
Hpy188III	TCNNGA	4 cut(s)	118, 130, 317, 821
Hpy8I	GTNNAC	3 cut(s)	45, 807, 859
HpyAV	CCTTC	4 cut(s)	148, 201, 818, 951
HpyCH4III	ACNGT	3 cut(s)	411, 891, 934
HpyCH4IV	ACGT	3 cut(s)	220, 505, 667
HpyCH4V	TGCA	6 cut(s)	287, 293, 503, 680, 836, 872
HpyF10VI	GCNNNNNNNGC	8 cut(s)	236, 440, 473, 509, 542, 677, 686, 740
HpyF3I	CTNAG	6 cut(s)	164, 318, 447, 672, 769, 972
HpySE526I	ACGT	3 cut(s)	220, 505, 667
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	1 cut(s)	434
KpnI	GGTACC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	568
KspAI	GTTAAC	1 cut(s)	807
Kzo9I	GATC	6 cut(s)	256, 313, 496, 568, 817, 865
LguI	GCTCTTC	1 cut(s)	856
LmnI	GCTCC	5 cut(s)	158, 193, 331, 943, 985
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	2 cut(s)	360, 407
MaeI	CTAG	3 cut(s)	267, 821, 842
MaeII	ACGT	3 cut(s)	220, 505, 667
MalI	GATC	6 cut(s)	258, 315, 498, 570, 819, 867
MboI	GATC	6 cut(s)	256, 313, 496, 568, 817, 865
MflI	RGATCY	2 cut(s)	313, 496
MhlI	GDGCHC	6 cut(s)	163, 232, 241, 673, 736, 851
MlsI	TGGCCA	2 cut(s)	5, 801
MluCI	AATT	4 cut(s)	208, 470, 547, 995
MluNI	TGGCCA	2 cut(s)	5, 801
MmeI	TCCRAC	1 cut(s)	393
Mox20I	TGGCCA	2 cut(s)	5, 801
MscI	TGGCCA	2 cut(s)	5, 801
MseI	TTAA	8 cut(s)	144, 180, 480, 720, 806, 963, 990, 998
Msp20I	TGGCCA	2 cut(s)	5, 801
MspI	CCGG	1 cut(s)	920
MvnI	CGCG	2 cut(s)	56, 131
MwoI	GCNNNNNNNGC	8 cut(s)	236, 440, 473, 509, 542, 677, 686, 740
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	6 cut(s)	256, 313, 496, 568, 817, 865
NlaIV	GGNNCC	2 cut(s)	238, 458
NruI	TCGCGA	1 cut(s)	131
NsbI	TGCGCA	1 cut(s)	435
NspV	TTCGAA	1 cut(s)	944
PciSI	GCTCTTC	1 cut(s)	856
PfeI	GAWTC	2 cut(s)	779, 968
PkrI	GCNGC	1 cut(s)	433
PmaCI	CACGTG	2 cut(s)	506, 668
PmlI	CACGTG	2 cut(s)	506, 668
Ppu21I	YACGTR	2 cut(s)	506, 668
Psp124BI	GAGCTC	2 cut(s)	163, 851
PspCI	CACGTG	2 cut(s)	506, 668
PspN4I	GGNNCC	2 cut(s)	238, 458
PsuI	RGATCY	2 cut(s)	313, 496
RruI	TCGCGA	1 cut(s)	131
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SacI	GAGCTC	2 cut(s)	163, 851
SapI	GCTCTTC	1 cut(s)	856
SaqAI	TTAA	8 cut(s)	144, 180, 480, 720, 806, 963, 990, 998
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	6 cut(s)	256, 313, 496, 568, 817, 865
SduI	GDGCHC	6 cut(s)	163, 232, 241, 673, 736, 851
SfaNI	GCATC	2 cut(s)	360, 407
SfcI	CTRYAG	1 cut(s)	810
SfuI	TTCGAA	1 cut(s)	944
Sse9I	AATT	4 cut(s)	208, 470, 547, 995
SsiI	CCGC	3 cut(s)	54, 536, 741
SspMI	CTAG	3 cut(s)	267, 821, 842
SstI	GAGCTC	2 cut(s)	163, 851
StyI	CCWWGG	1 cut(s)	1011
TaaI	ACNGT	3 cut(s)	411, 891, 934
TaiI	ACGT	3 cut(s)	223, 508, 670
TaqI	TCGA	2 cut(s)	644, 944
TasI	AATT	4 cut(s)	208, 470, 547, 995
TfiI	GAWTC	2 cut(s)	779, 968
Tru1I	TTAA	8 cut(s)	144, 180, 480, 720, 806, 963, 990, 998
Tru9I	TTAA	8 cut(s)	144, 180, 480, 720, 806, 963, 990, 998
TscAI	CASTG	1 cut(s)	780
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	5 cut(s)	51, 78, 260, 365, 1008
TspGWI	ACGGA	1 cut(s)	1018
TspRI	CASTG	1 cut(s)	780
XbaI	TCTAGA	1 cut(s)	820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XspI	CTAG	3 cut(s)	267, 821, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.