Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

21890146 .. 21896642

Gene Structure 6497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCCACCCAATTGCAGATATTTACAGGATTGACCATGGCTTCAACTCCCGCCTCTTCGTTCCAATCCCCGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCCTCCACCACCCTCTCCATGGTCAGGAGACCTCTCACGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTGAAGTCATTAGGGTTGCTCCTTCCAATAAGCGGCATCATTCGAGACAACGTGGAGGTGCTCTCGGTGCCCGTATGAACCTTTTTGACCGGTTTTCTAGAGTTGTCAAGTCATATGCAAATGCAATCATAAGTTCCTTTGAAGATCCTGAGAAAATCTTGGAGCAAGCAGTTCTTGAAATGAATGATGACTTGACAAAGATGCGTCAGGCCACAGCACAGGTATTGGCTTCTCAAAAACGATTGGAAAATAAGTACAAAGCTGCGCAACAAGCTTCTGAGGACTGGTATCGAAAAGCACAATTAGCTCTTCAGAAAGGAGAGGAGGATCTTGCACGTGAAGCTCTGAAGAGGCGTAAATCTTTTGCGGCAAGTCTAATCAGTAGTAGAATTTTTTTATGTGATAATGCCAATTCTTTGAGAACGCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTGTCTAATACAAAGCTTTTAGAGAGCAAGATACAAGAGGCAAGATCGAAAAAAGATACCCTCAAAGCACGCGCTCAGTCTGCAAAGACTGCTACTAAAGTGAGTGAGATGGTGGGGAATGTCAATACAAGTAGTGCCCTTTCCGCTTTTGACAAGATGGAGGAGAAAGTCCTGGCAATGGAATCCCAAGCAGAAGCTCTTGGCCAGTTAACTACAGACGATCTGGAAGGAAAGTTTGCGATGCTAGAGAGCTCTTCTGTTGATGATGATCTTGCAAGCTTGAAGAAAGAACTGTCTGGTAGTTCAAAGAAAGGAGATCTTCCACCCGGAAGAACTGTTACTCCCAGTTCAAACAAGGCATATCCATTCAAGGATTCTGAAATTGAAATGGAGCTTAATGACTTGAGACGGAAAGCGCAGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

355

Amino Acids

38.93

Weight (kDa)

9.43

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	86 - 310	8e-48	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
Acc16I	TGCGCA	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	1 cut(s)	711
AciI	CCGC	6 cut(s)	51, 71, 159, 211, 545, 783
AclWI	GGATC	2 cut(s)	317, 513
AcoI	YGGCCR	2 cut(s)	3, 841
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	2 cut(s)	473, 545
AcvI	CACGTG	1 cut(s)	515
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	4 cut(s)	121, 126, 210, 817
AgeI	ACCGGT	1 cut(s)	267
AjnI	CCWGG	1 cut(s)	810
AloI	GAACNNNNNNTCC	2 cut(s)	964, 996
Alw21I	GWGCWC	3 cut(s)	172, 241, 893
Alw26I	GTCTC	3 cut(s)	124, 217, 1039
AlwI	GGATC	2 cut(s)	317, 513
AoxI	GGCC	3 cut(s)	3, 387, 841
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	567
AsiGI	ACCGGT	1 cut(s)	267
AspLEI	GCGC	3 cut(s)	445, 713, 1057
AsuC2I	CCSGG	1 cut(s)	966
BaeGI	GKGCMC	2 cut(s)	250, 778
BalI	TGGCCA	2 cut(s)	5, 843
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	172, 893
BarI	GAAGNNNNNNTAC	2 cut(s)	961, 993
BbrPI	CACGTG	1 cut(s)	515
Bbv12I	GWGCWC	3 cut(s)	172, 241, 893
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	2 cut(s)	742, 790
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	812
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	966
BcoDI	GTCTC	3 cut(s)	124, 217, 1039
BfaI	CTAG	2 cut(s)	276, 884
BfmI	CTRYAG	1 cut(s)	852
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	3 cut(s)	212, 441, 546
BlsI	GCNGC	3 cut(s)	213, 442, 547
Bme1390I	CCNGG	2 cut(s)	812, 966
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	812, 966
BmrI	ACTGGG	1 cut(s)	978
BmsI	GCATC	3 cut(s)	223, 369, 870
BmuI	ACTGGG	1 cut(s)	978
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
BpuEI	CTTGAG	1 cut(s)	1063
BpuMI	CCSGG	1 cut(s)	966
BsaAI	YACGTR	1 cut(s)	515
BsaBI	GATNNNNATC	1 cut(s)	906
BsaHI	GRCGYC	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	36, 120
BsaWI	WCCGGW	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	964, 994
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 126, 210, 817
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	3 cut(s)	467, 844, 984
Bse3DI	GCAATG	1 cut(s)	822
Bse8I	GATNNNNATC	1 cut(s)	906
BseBI	CCWGG	1 cut(s)	812
BseDI	CCNNGG	2 cut(s)	36, 120
BseGI	GGATG	1 cut(s)	101
BseJI	GATNNNNATC	1 cut(s)	906
BseLI	CCNNNNNNNGG	4 cut(s)	121, 126, 210, 817
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	3 cut(s)	318, 447, 728
BseNI	ACTGG	3 cut(s)	467, 844, 984
BseRI	GAGGAG	2 cut(s)	515, 815
BseSI	GKGCMC	2 cut(s)	250, 778
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	3 cut(s)	5, 389, 843
BshNI	GGYRCC	1 cut(s)	245
BshTI	ACCGGT	1 cut(s)	267
BsiHKAI	GWGCWC	3 cut(s)	172, 241, 893
BsiSI	CCGG	2 cut(s)	268, 966
BslI	CCNNNNNNNGG	4 cut(s)	121, 126, 210, 817
BsmAI	GTCTC	3 cut(s)	124, 217, 1039
BsmBI	CGTCTC	1 cut(s)	1039
BsnI	GGCC	3 cut(s)	5, 389, 843
Bso31I	GGTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	5 cut(s)	172, 241, 250, 778, 893
Bsp143I	GATC	7 cut(s)	322, 505, 610, 683, 859, 907, 955
Bsp19I	CCATGG	2 cut(s)	36, 120
BspACI	CCGC	6 cut(s)	51, 71, 159, 211, 545, 783
BspANI	GGCC	3 cut(s)	5, 389, 843
BspCNI	CTCAG	3 cut(s)	319, 448, 727
BspFNI	CGCG	1 cut(s)	711
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	2 cut(s)	317, 513
BspQI	GCTCTTC	2 cut(s)	492, 898
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	822
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	467, 844, 984
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	2 cut(s)	36, 120
BssMI	GATC	7 cut(s)	322, 505, 610, 683, 859, 907, 955
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	36, 120
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	2 cut(s)	933, 976
Bst6I	CTCTTC	4 cut(s)	61, 492, 521, 898
BstACI	GRCGYC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	345, 709, 916
BstDEI	CTNAG	3 cut(s)	327, 456, 714
BstDSI	CCRYGG	2 cut(s)	36, 120
BstF5I	GGATG	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	711
BstHHI	GCGC	3 cut(s)	445, 713, 1057
BstKTI	GATC	7 cut(s)	325, 508, 613, 686, 862, 910, 958
BstMAI	GTCTC	3 cut(s)	124, 217, 1039
BstMBI	GATC	7 cut(s)	322, 505, 610, 683, 859, 907, 955
BstMWI	GCNNNNNNNGC	7 cut(s)	245, 449, 482, 518, 719, 728, 782
BstNI	CCWGG	1 cut(s)	812
BstSCI	CCNGG	2 cut(s)	810, 964
BstSFI	CTRYAG	1 cut(s)	852
BstSLI	GKGCMC	2 cut(s)	250, 778
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	3 cut(s)	322, 505, 955
BstYI	RGATCY	3 cut(s)	322, 505, 955
BsuRI	GGCC	3 cut(s)	5, 389, 843
BtgI	CCRYGG	2 cut(s)	36, 120
BtgZI	GCGATG	1 cut(s)	893
BtsCI	GGATG	1 cut(s)	101
Cac8I	GCNNGC	3 cut(s)	345, 709, 916
CfoI	GCGC	3 cut(s)	445, 713, 1057
Cfr10I	RCCGGY	1 cut(s)	267
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	433
CspAI	ACCGGT	1 cut(s)	267
CviAII	CATG	2 cut(s)	37, 121
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	3 cut(s)	327, 456, 714
DpnI	GATC	7 cut(s)	324, 507, 612, 685, 861, 909, 957
DpnII	GATC	7 cut(s)	322, 505, 610, 683, 859, 907, 955
EaeI	YGGCCR	2 cut(s)	3, 841
Eam1104I	CTCTTC	4 cut(s)	61, 492, 521, 898
EarI	CTCTTC	4 cut(s)	61, 492, 521, 898
EciI	GGCGGA	1 cut(s)	174
Ecl136II	GAGCTC	2 cut(s)	170, 891
Eco130I	CCWWGG	2 cut(s)	36, 120
Eco24I	GRGCYC	2 cut(s)	172, 893
Eco31I	GGTCTC	1 cut(s)	124
Eco53kI	GAGCTC	2 cut(s)	170, 891
Eco57I	CTGAAG	2 cut(s)	473, 545
Eco72I	CACGTG	1 cut(s)	515
EcoICRI	GAGCTC	2 cut(s)	170, 891
EcoRII	CCWGG	1 cut(s)	810
EcoT14I	CCWWGG	2 cut(s)	36, 120
EcoT38I	GRGCYC	2 cut(s)	172, 893
ErhI	CCWWGG	2 cut(s)	36, 120
Esp3I	CGTCTC	1 cut(s)	1039
FaeI	CATG	2 cut(s)	40, 124
FaiI	YATR	8 cut(s)	38, 122, 254, 292, 294, 308, 577, 1000
FalI	AAGNNNNNCTT	4 cut(s)	336, 368, 942, 974
FatI	CATG	2 cut(s)	36, 120
FauI	CCCGC	2 cut(s)	58, 78
FauNDI	CATATG	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	3 cut(s)	212, 441, 546
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	2 cut(s)	172, 893
Fsp4HI	GCNGC	3 cut(s)	212, 441, 546
FspBI	CTAG	2 cut(s)	276, 884
FspI	TGCGCA	1 cut(s)	444
GlaI	GCGC	3 cut(s)	444, 712, 1056
GluI	GCNGC	3 cut(s)	212, 441, 546
HaeIII	GGCC	3 cut(s)	5, 389, 843
HapII	CCGG	2 cut(s)	268, 966
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	3 cut(s)	445, 713, 1057
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	40, 124
Hin6I	GCGC	3 cut(s)	443, 711, 1055
HinP1I	GCGC	3 cut(s)	443, 711, 1055
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HindIII	AAGCTT	3 cut(s)	450, 653, 916
HinfI	GANTC	2 cut(s)	821, 1013
HpaI	GTTAAC	1 cut(s)	849
HpaII	CCGG	2 cut(s)	268, 966
Hpy166II	GTNNAC	1 cut(s)	849
Hpy188I	TCNGA	4 cut(s)	457, 492, 525, 1018
Hpy188III	TCNNGA	7 cut(s)	127, 139, 222, 276, 326, 353, 863
Hpy8I	GTNNAC	1 cut(s)	849
Hpy99I	CGWCG	2 cut(s)	145, 148
HpyAV	CCTTC	3 cut(s)	84, 210, 860
HpyCH4III	ACNGT	2 cut(s)	933, 976
HpyCH4IV	ACGT	3 cut(s)	143, 229, 514
HpyCH4V	TGCA	6 cut(s)	16, 296, 302, 512, 722, 914
HpyF10VI	GCNNNNNNNGC	7 cut(s)	245, 449, 482, 518, 719, 728, 782
HpyF3I	CTNAG	3 cut(s)	327, 456, 714
HpySE526I	ACGT	3 cut(s)	143, 229, 514
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	40, 124
HspAI	GCGC	3 cut(s)	443, 711, 1055
Ksp22I	TGATCA	1 cut(s)	610
KspAI	GTTAAC	1 cut(s)	849
Kzo9I	GATC	7 cut(s)	322, 505, 610, 683, 859, 907, 955
LguI	GCTCTTC	2 cut(s)	492, 898
LmnI	GCTCC	4 cut(s)	167, 202, 340, 1030
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	3 cut(s)	223, 369, 870
MaeI	CTAG	2 cut(s)	276, 884
MaeII	ACGT	3 cut(s)	143, 229, 514
MaeIII	GTNAC	1 cut(s)	976
MalI	GATC	7 cut(s)	324, 507, 612, 685, 861, 909, 957
MboI	GATC	7 cut(s)	322, 505, 610, 683, 859, 907, 955
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	3 cut(s)	322, 505, 955
MhlI	GDGCHC	5 cut(s)	172, 241, 250, 778, 893
MlsI	TGGCCA	2 cut(s)	5, 843
MluCI	AATT	5 cut(s)	11, 479, 567, 589, 1020
MluNI	TGGCCA	2 cut(s)	5, 843
Mox20I	TGGCCA	2 cut(s)	5, 843
MscI	TGGCCA	2 cut(s)	5, 843
MseI	TTAA	2 cut(s)	848, 1035
Msp20I	TGGCCA	2 cut(s)	5, 843
MspI	CCGG	2 cut(s)	268, 966
MspR9I	CCNGG	2 cut(s)	812, 966
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	812
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	7 cut(s)	245, 449, 482, 518, 719, 728, 782
NciI	CCSGG	1 cut(s)	966
NcoI	CCATGG	2 cut(s)	36, 120
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	7 cut(s)	322, 505, 610, 683, 859, 907, 955
NlaIII	CATG	2 cut(s)	40, 124
NlaIV	GGNNCC	1 cut(s)	247
NsbI	TGCGCA	1 cut(s)	444
PciSI	GCTCTTC	2 cut(s)	492, 898
PfeI	GAWTC	2 cut(s)	821, 1013
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	213, 442, 547
PmaCI	CACGTG	1 cut(s)	515
PmlI	CACGTG	1 cut(s)	515
Ppu21I	YACGTR	1 cut(s)	515
Psp124BI	GAGCTC	2 cut(s)	172, 893
Psp6I	CCWGG	1 cut(s)	810
PspCI	CACGTG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	810
PspN4I	GGNNCC	1 cut(s)	247
PsuI	RGATCY	3 cut(s)	322, 505, 955
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SacI	GAGCTC	2 cut(s)	172, 893
SapI	GCTCTTC	2 cut(s)	492, 898
SaqAI	TTAA	2 cut(s)	848, 1035
SatI	GCNGC	3 cut(s)	212, 441, 546
Sau3AI	GATC	7 cut(s)	322, 505, 610, 683, 859, 907, 955
ScrFI	CCNGG	2 cut(s)	812, 966
SduI	GDGCHC	5 cut(s)	172, 241, 250, 778, 893
SfaNI	GCATC	3 cut(s)	223, 369, 870
SfcI	CTRYAG	1 cut(s)	852
SmlI	CTYRAG	1 cut(s)	1042
SmoI	CTYRAG	1 cut(s)	1042
Sse9I	AATT	5 cut(s)	11, 479, 567, 589, 1020
SsiI	CCGC	6 cut(s)	51, 71, 159, 211, 545, 783
SspMI	CTAG	2 cut(s)	276, 884
SstI	GAGCTC	2 cut(s)	172, 893
StyD4I	CCNGG	2 cut(s)	810, 964
StyI	CCWWGG	2 cut(s)	36, 120
TaaI	ACNGT	2 cut(s)	933, 976
TaiI	ACGT	3 cut(s)	146, 232, 517
TaqI	TCGA	3 cut(s)	221, 469, 686
TasI	AATT	5 cut(s)	11, 479, 567, 589, 1020
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	2 cut(s)	214, 548
TfiI	GAWTC	2 cut(s)	821, 1013
Tru1I	TTAA	2 cut(s)	848, 1035
Tru9I	TTAA	2 cut(s)	848, 1035
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	3 cut(s)	90, 269, 374
TspGWI	ACGGA	1 cut(s)	1063
XapI	RAATTY	1 cut(s)	567
XbaI	TCTAGA	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XspI	CTAG	2 cut(s)	276, 884
ZraI	GACGTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.