Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Forward (+)

20235687 .. 20242707

Gene Structure 7021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G203200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCCACAAAATTGCAGATATTTACAGGATTCCCCATGGCATCAACGCCTGCCTCTTCGTTCCAAGCCTCTTCTTCAAGCTCCTACAGTCTCGCTATGGTCAGAAAACCTCTCACCACTTCCTTCTTTAATGGTGGAGTGGGGGCTCTAAAAGTTGAAGTGATTAGGGTTGCTCCTTCCAATCGACCACATTATTCTAGGCAGCGTGGAGGTGCCCTTGGTGCCCGTATGAACCTATTTGACAGGTTTGCTAGAGTTGTCAAGTCATATGCAAATGCACTCATAAGTACTTTTGAAGATCCTGAGAAAATCTTGGAGCAAGCAGTTCTTGAAATGAATGATGACTTGACAAAGATGCGTCAAGCCACAGCACAAGTGTTGGCATCTCAAAAGCGATTGGAAAATAAGTACAAAGCTGCTGAACAAGCTTCTGAGGACTGGTACCGCAAAGCACAATTAGCTCTTCAAAAAGGAGAGGAGGATCTTGCACGTGAAGCTCTGAAGAGGCGTAAATCTTTCGCTGATAATGCTAATACTTTGAAAGCTCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTGTCTAATACACGGCTTTTAGAGAGCAAGATACAGGAGGCAAGGTCGAAAAAAGATACTCTTAAAGCACGTGCTCAGTCTGCAAAGACTGCAACTAAAGTGAGTGAGATGGTGGGGAATGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGAAAGTCTTAGCAATGGAATCCCAGGCAGAAGCTATTGGCCAATTAACTACTGATGATCTAGAAGGAAAGTTTGCGTTGCTAGAGAGCTCTTCAGTTGACGATGATCTTGCAAACTTGAAGAAAGAACTATCTGGTAGTTCAAAGAAAGGAGAGCTCCCACCTGGAAGAACTGCTGCTCCGAGTTCGAACAAGGCATATCCATTTCGAGATTCTGAAATTGAGATGGAGCTTAATGAATTGAGAAGAAAAGCCAAGGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

337

Amino Acids

37.03

Weight (kDa)

9.36

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	441
AccB1I	GGYRCC	3 cut(s)	212, 221, 441
AciI	CCGC	1 cut(s)	445
AclWI	GGATC	2 cut(s)	293, 489
AcoI	YGGCCR	2 cut(s)	3, 784
AcuI	CTGAAG	2 cut(s)	521, 822
AcvI	CACGTG	2 cut(s)	491, 653
AfaI	GTAC	3 cut(s)	289, 410, 443
AgsI	TTSAA	9 cut(s)	78, 158, 296, 332, 467, 541, 734, 865, 888
AjnI	CCWGG	2 cut(s)	768, 907
AloI	GAACNNNNNNTCC	2 cut(s)	907, 939
Alw21I	GWGCWC	4 cut(s)	658, 721, 836, 903
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	293, 489
AoxI	GGCC	2 cut(s)	3, 784
ApeKI	GCWGC	3 cut(s)	202, 416, 920
Asp718I	GGTACC	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	106
AsuII	TTCGAA	1 cut(s)	932
BaeGI	GKGCMC	2 cut(s)	217, 226
BalI	TGGCCA	2 cut(s)	5, 786
BanI	GGYRCC	3 cut(s)	212, 221, 441
BanII	GRGCYC	3 cut(s)	148, 836, 903
BbrPI	CACGTG	2 cut(s)	491, 653
Bbv12I	GWGCWC	4 cut(s)	658, 721, 836, 903
BbvI	GCAGC	3 cut(s)	214, 403, 907
BccI	CCATC	3 cut(s)	685, 733, 964
BceAI	ACGGC	1 cut(s)	611
BcgI	CGANNNNNNTGC	2 cut(s)	836, 870
BciT130I	CCWGG	2 cut(s)	770, 909
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	4 cut(s)	198, 252, 806, 827
BfmI	CTRYAG	1 cut(s)	85
BisI	GCNGC	3 cut(s)	203, 417, 921
BlsI	GCNGC	3 cut(s)	204, 418, 922
BmcAI	AGTACT	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	770, 909
BmiI	GGNNCC	3 cut(s)	214, 223, 443
BmrFI	CCNGG	2 cut(s)	770, 909
BmsI	GCATC	3 cut(s)	50, 345, 392
Bpu14I	TTCGAA	1 cut(s)	932
BsaAI	YACGTR	2 cut(s)	491, 653
BsaJI	CCNNGG	4 cut(s)	36, 217, 768, 999
BsaXI	ACNNNNNCTCC	4 cut(s)	611, 641, 907, 937
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	1 cut(s)	765
BseBI	CCWGG	2 cut(s)	770, 909
BseDI	CCNNGG	4 cut(s)	36, 217, 768, 999
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	3 cut(s)	294, 423, 671
BseNI	ACTGG	1 cut(s)	443
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	2 cut(s)	217, 226
BseXI	GCAGC	3 cut(s)	214, 403, 907
BshFI	GGCC	2 cut(s)	5, 786
BshNI	GGYRCC	3 cut(s)	212, 221, 441
BsiHKAI	GWGCWC	4 cut(s)	658, 721, 836, 903
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	5, 786
Bsp119I	TTCGAA	1 cut(s)	932
Bsp1286I	GDGCHC	7 cut(s)	148, 217, 226, 658, 721, 836, 903
Bsp143I	GATC	5 cut(s)	298, 481, 553, 802, 850
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	1 cut(s)	445
BspANI	GGCC	2 cut(s)	5, 786
BspCNI	CTCAG	3 cut(s)	295, 424, 670
BspLI	GGNNCC	3 cut(s)	214, 223, 443
BspPI	GGATC	2 cut(s)	293, 489
BspQI	GCTCTTC	2 cut(s)	468, 841
BspT104I	TTCGAA	1 cut(s)	932
BspT107I	GGYRCC	3 cut(s)	212, 221, 441
BsrDI	GCAATG	1 cut(s)	765
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	4 cut(s)	36, 217, 768, 999
BssMI	GATC	5 cut(s)	298, 481, 553, 802, 850
BssT1I	CCWWGG	3 cut(s)	36, 217, 999
Bst2UI	CCWGG	2 cut(s)	770, 909
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	6 cut(s)	61, 76, 468, 497, 738, 841
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstBAI	YACGTR	2 cut(s)	491, 653
BstBI	TTCGAA	1 cut(s)	932
BstC8I	GCNNGC	2 cut(s)	51, 321
BstDEI	CTNAG	4 cut(s)	303, 432, 657, 754
BstDSI	CCRYGG	1 cut(s)	36
BstKTI	GATC	5 cut(s)	301, 484, 556, 805, 853
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	5 cut(s)	298, 481, 553, 802, 850
BstMWI	GCNNNNNNNGC	8 cut(s)	221, 425, 458, 494, 527, 662, 671, 725
BstNI	CCWGG	2 cut(s)	770, 909
BstSCI	CCNGG	2 cut(s)	768, 907
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	2 cut(s)	217, 226
BstV1I	GCAGC	3 cut(s)	214, 403, 907
BstX2I	RGATCY	2 cut(s)	298, 481
BstYI	RGATCY	2 cut(s)	298, 481
BsuRI	GGCC	2 cut(s)	5, 786
BtgI	CCRYGG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	51, 321
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	288, 409, 442
CviAII	CATG	1 cut(s)	37
CviQI	GTAC	3 cut(s)	288, 409, 442
DdeI	CTNAG	4 cut(s)	303, 432, 657, 754
DpnI	GATC	5 cut(s)	300, 483, 555, 804, 852
DpnII	GATC	5 cut(s)	298, 481, 553, 802, 850
EaeI	YGGCCR	2 cut(s)	3, 784
Eam1104I	CTCTTC	6 cut(s)	61, 76, 468, 497, 738, 841
EarI	CTCTTC	6 cut(s)	61, 76, 468, 497, 738, 841
Ecl136II	GAGCTC	2 cut(s)	834, 901
Eco130I	CCWWGG	3 cut(s)	36, 217, 999
Eco24I	GRGCYC	3 cut(s)	148, 836, 903
Eco53kI	GAGCTC	2 cut(s)	834, 901
Eco57I	CTGAAG	2 cut(s)	521, 822
Eco72I	CACGTG	2 cut(s)	491, 653
EcoICRI	GAGCTC	2 cut(s)	834, 901
EcoRII	CCWGG	2 cut(s)	768, 907
EcoT14I	CCWWGG	3 cut(s)	36, 217, 999
EcoT38I	GRGCYC	3 cut(s)	148, 836, 903
ErhI	CCWWGG	3 cut(s)	36, 217, 999
FaeI	CATG	1 cut(s)	40
FaiI	YATR	7 cut(s)	38, 98, 230, 268, 270, 284, 943
FalI	AAGNNNNNCTT	6 cut(s)	312, 344, 534, 566, 627, 659
FatI	CATG	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	203, 417, 921
FriOI	GRGCYC	3 cut(s)	148, 836, 903
Fsp4HI	GCNGC	3 cut(s)	203, 417, 921
FspBI	CTAG	4 cut(s)	198, 252, 806, 827
GluI	GCNGC	3 cut(s)	203, 417, 921
HaeIII	GGCC	2 cut(s)	5, 786
HgaI	GACGC	1 cut(s)	347
Hin1II	CATG	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	3 cut(s)	30, 764, 956
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	844
Hpy188I	TCNGA	6 cut(s)	104, 433, 501, 927, 961, 1010
Hpy188III	TCNNGA	4 cut(s)	302, 329, 806, 953
Hpy8I	GTNNAC	1 cut(s)	844
HpyAV	CCTTC	3 cut(s)	133, 186, 803
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	2 cut(s)	490, 652
HpyCH4V	TGCA	7 cut(s)	16, 272, 278, 488, 665, 674, 857
HpyF10VI	GCNNNNNNNGC	8 cut(s)	221, 425, 458, 494, 527, 662, 671, 725
HpyF3I	CTNAG	4 cut(s)	303, 432, 657, 754
HpySE526I	ACGT	2 cut(s)	490, 652
Hsp92II	CATG	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	298, 481, 553, 802, 850
LguI	GCTCTTC	2 cut(s)	468, 841
LmnI	GCTCC	6 cut(s)	86, 178, 316, 906, 928, 973
Lsp1109I	GCAGC	3 cut(s)	214, 403, 907
LweI	GCATC	3 cut(s)	50, 345, 392
MaeI	CTAG	4 cut(s)	198, 252, 806, 827
MaeII	ACGT	2 cut(s)	490, 652
MalI	GATC	5 cut(s)	300, 483, 555, 804, 852
MboI	GATC	5 cut(s)	298, 481, 553, 802, 850
MflI	RGATCY	2 cut(s)	298, 481
MhlI	GDGCHC	7 cut(s)	148, 217, 226, 658, 721, 836, 903
MlsI	TGGCCA	2 cut(s)	5, 786
MluCI	AATT	5 cut(s)	11, 455, 788, 963, 983
MluNI	TGGCCA	2 cut(s)	5, 786
MnlI	CCTC	9 cut(s)	64, 79, 120, 203, 427, 469, 472, 498, 613
Mox20I	TGGCCA	2 cut(s)	5, 786
MscI	TGGCCA	2 cut(s)	5, 786
MseI	TTAA	4 cut(s)	129, 645, 791, 978
Msp20I	TGGCCA	2 cut(s)	5, 786
MspR9I	CCNGG	2 cut(s)	770, 909
MvaI	CCWGG	2 cut(s)	770, 909
MwoI	GCNNNNNNNGC	8 cut(s)	221, 425, 458, 494, 527, 662, 671, 725
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	5 cut(s)	298, 481, 553, 802, 850
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	3 cut(s)	214, 223, 443
NspV	TTCGAA	1 cut(s)	932
PciSI	GCTCTTC	2 cut(s)	468, 841
PfeI	GAWTC	3 cut(s)	30, 764, 956
PkrI	GCNGC	3 cut(s)	204, 418, 922
PmaCI	CACGTG	2 cut(s)	491, 653
PmlI	CACGTG	2 cut(s)	491, 653
Ppu21I	YACGTR	2 cut(s)	491, 653
Psp124BI	GAGCTC	2 cut(s)	836, 903
Psp6I	CCWGG	2 cut(s)	768, 907
PspCI	CACGTG	2 cut(s)	491, 653
PspGI	CCWGG	2 cut(s)	768, 907
PspN4I	GGNNCC	3 cut(s)	214, 223, 443
PsuI	RGATCY	2 cut(s)	298, 481
RsaI	GTAC	3 cut(s)	289, 410, 443
RsaNI	GTAC	3 cut(s)	288, 409, 442
SacI	GAGCTC	2 cut(s)	836, 903
SapI	GCTCTTC	2 cut(s)	468, 841
SaqAI	TTAA	4 cut(s)	129, 645, 791, 978
SatI	GCNGC	3 cut(s)	203, 417, 921
Sau3AI	GATC	5 cut(s)	298, 481, 553, 802, 850
ScaI	AGTACT	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	770, 909
SduI	GDGCHC	7 cut(s)	148, 217, 226, 658, 721, 836, 903
SfaNI	GCATC	3 cut(s)	50, 345, 392
SfcI	CTRYAG	1 cut(s)	85
SfuI	TTCGAA	1 cut(s)	932
Sse9I	AATT	5 cut(s)	11, 455, 788, 963, 983
SsiI	CCGC	1 cut(s)	445
SspMI	CTAG	4 cut(s)	198, 252, 806, 827
SstI	GAGCTC	2 cut(s)	836, 903
StyD4I	CCNGG	2 cut(s)	768, 907
StyI	CCWWGG	3 cut(s)	36, 217, 999
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	2 cut(s)	493, 655
TaqI	TCGA	4 cut(s)	184, 629, 932, 952
TasI	AATT	5 cut(s)	11, 455, 788, 963, 983
TatI	WGTACW	2 cut(s)	287, 408
TfiI	GAWTC	3 cut(s)	30, 764, 956
Tru1I	TTAA	4 cut(s)	129, 645, 791, 978
Tru9I	TTAA	4 cut(s)	129, 645, 791, 978
TseI	GCWGC	3 cut(s)	202, 416, 920
TspDTI	ATGAA	3 cut(s)	245, 350, 996
XbaI	TCTAGA	1 cut(s)	805
XspI	CTAG	4 cut(s)	198, 252, 806, 827
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.