Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002961

Physical Location & Seq

Genomic Coordinates Reverse (-)

20231686 .. 20240746

Gene Structure 9061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1177400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCCACAAAATCGCAGATATTTACAGGATTGACCATGGCGTCGACGCCTGCCTCTTCGTTCCAAGCTTCTTCTTCAAGCTCCAACAGTCTCTCCATGGTCAGAAAACCTCTCACGACTTCCTTCTTCAATGGCGGAGTGGGGGCTCTAAAAGTTGAAGTGATTAGGGTTGCTCCTTCCAGTCGACCACATTATTCTAGACAACGTGGGGGGGCTCTTGGTGCTCGTATGAACCTATTTGACCGGTTTGCTAGAGTTATCAAGTCATATGCAAATGCATTAGTAAGTACCTTTGAAGATCCTGAGAAAATCTTAGAGCAAGCAGTTCTTGAAATGAATGATGATTTGACAAAGATGCGTCAGGCCACAGCACAAGTGTTGGCATCTCAAAAGCGGATGGAGAATAAGTACAAAGCTGCTGCACAAGCTTCTGAGGACTGGTACCGCAAAGCACAATTAGCTCTTCAAAAAGGAGAGGAGGATCTTGCACGTGAAGCTTTGAAGAGGCGTAAATCTTTTGCTGATAATGCTAATACTTTGAAATCTCAACTTGATCAACAAAAAGCTGTTGTTGATAATCTTGTGTCTAATACACGGCTTTTAGAGAGCAAGATACAGGAGGCAAGGTCGAAAAAAGATACCCTCAAAGCACGTGCTCAGTCTGCAAAGACTGCAACTAAAGTGAGTGAGATGGTGGGGAATGTCAATACAAGTAGTGCTCTTTCAGCTTTTGATAAGATGGAAGAGAAAGTCTTAGCAATGGAATCCCAAGCAGAAGCTCTTGGTCAGTTAACTACAGATGATCTGGAAGGAAAGTTTGCGTTGCTAGAGGGCTCTTCAGTTGACGATGATCTTGCAAACTTGAAGAAAGAATTATCTGGTAGTTCAAAGGTGTCTAATTTTCTTGTAATTCCATCATGCTCAATTGGGTTGACCAAAGAAGCATTAAGAGGAATCGTGCGTTCTATTTATCTGGGTTGCTATGGTTCTTCTTTCCTATATTGTAAAGGAGAACTCCCGCCCGGAAGAACAGCCGCTCCCAGTAACAAGGCATATCCATTTCGAGATTCTGAAATTGAGATGGAGCTTAATGAGTTGAGAAGAAAAGCCAAGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

374

Amino Acids

40.89

Weight (kDa)

9.39

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	78 - 291	4e-52	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65260
fragaria_vesca	FvH4_1g24800 FvH4_1g24800 FvH4_2g19990 FvH4_2g19990 FvH4_3g16870
malus_domestica	MD00G1019200.v1.1 MD15G1434500.v1.1 MD17G1177400.v1.1
prunus_persica	Prupe.1G203200_v2.0.a1
pyrus_communis	pycom13g26650 pycom17g18630
rosa_chinensis	RchiOBHm_Chr2g0122441 RchiOBHm_Chr5g0028111 RchiOBHm_Chr6g0285711
rosa_laevigata	RLG00000012615 RLG00000018677 RLG00000033067
rosa_multiflora	Rmu_sc0001356.1_g000011 Rmu_sc0001989.1_g000001 Rmu_sc0003832.1_g000020
rosa_roxburghii	Rroxscaffold_2G00121650 Rroxscaffold_7G00182810
rosa_rugosa	Rorug02G0237700 Rorug02G0237800 Rorug05G0104200 Rorug06G0176600 Rorug06G0176700
rosa_samantha	Rh5BG196000 Rh5CG216000 Rh5DG197700 Rh6AG288200 Rh6BG289800 Rh6CG290800 Rh6DG283500
rosa_wichuraiana	Rw2G023650 Rw5G018030 Rw6G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
Acc65I	GGTACC	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	441
AccBSI	CCGCTC	1 cut(s)	1037
AccI	GTMKAC	2 cut(s)	44, 184
AciI	CCGC	5 cut(s)	135, 394, 445, 1019, 1035
AclWI	GGATC	2 cut(s)	293, 489
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	822
AcvI	CACGTG	2 cut(s)	491, 653
AcyI	GRCGYC	2 cut(s)	41, 47
AfaI	GTAC	3 cut(s)	289, 410, 443
AgeI	ACCGGT	1 cut(s)	243
AloI	GAACNNNNNNTCC	2 cut(s)	1021, 1053
Alw21I	GWGCWC	3 cut(s)	226, 658, 721
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	293, 489
AoxI	GGCC	2 cut(s)	3, 363
ApeKI	GCWGC	2 cut(s)	416, 419
AsiGI	ACCGGT	1 cut(s)	243
Asp718I	GGTACC	1 cut(s)	441
AsuC2I	CCSGG	1 cut(s)	1023
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	441
BanII	GRGCYC	3 cut(s)	148, 217, 836
BbrPI	CACGTG	2 cut(s)	491, 653
Bbv12I	GWGCWC	3 cut(s)	226, 658, 721
BbvI	GCAGC	2 cut(s)	403, 406
BccI	CCATC	5 cut(s)	391, 685, 733, 922, 1075
BceAI	ACGGC	1 cut(s)	611
BcgI	CGANNNNNNTGC	2 cut(s)	836, 870
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	1023
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	3 cut(s)	198, 252, 827
BfmI	CTRYAG	1 cut(s)	795
BisI	GCNGC	3 cut(s)	417, 420, 1035
BlsI	GCNGC	3 cut(s)	418, 421, 1036
Bme1390I	CCNGG	1 cut(s)	1023
BmiI	GGNNCC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	1023
BmrI	ACTGGG	1 cut(s)	1035
BmsI	GCATC	2 cut(s)	345, 392
BmuI	ACTGGG	1 cut(s)	1035
BpuMI	CCSGG	1 cut(s)	1023
BsaAI	YACGTR	2 cut(s)	491, 653
BsaHI	GRCGYC	2 cut(s)	41, 47
BsaJI	CCNNGG	3 cut(s)	36, 96, 1110
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	8 cut(s)	77, 107, 392, 422, 611, 641, 1021, 1051
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	3 cut(s)	180, 443, 1041
Bse3DI	GCAATG	1 cut(s)	765
BseDI	CCNNGG	3 cut(s)	36, 96, 1110
BseGI	GGATG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	3 cut(s)	294, 423, 671
BseNI	ACTGG	3 cut(s)	180, 443, 1041
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	403, 406
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	5, 365
BshNI	GGYRCC	1 cut(s)	441
BshTI	ACCGGT	1 cut(s)	243
BsiHKAI	GWGCWC	3 cut(s)	226, 658, 721
BsiSI	CCGG	2 cut(s)	244, 1023
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	5, 365
Bsp1286I	GDGCHC	6 cut(s)	148, 217, 226, 658, 721, 836
Bsp143I	GATC	5 cut(s)	298, 481, 553, 802, 850
Bsp19I	CCATGG	2 cut(s)	36, 96
BspACI	CCGC	5 cut(s)	135, 394, 445, 1019, 1035
BspANI	GGCC	2 cut(s)	5, 365
BspCNI	CTCAG	3 cut(s)	295, 424, 670
BspLI	GGNNCC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	293, 489
BspQI	GCTCTTC	2 cut(s)	468, 841
BspT107I	GGYRCC	1 cut(s)	441
BsrBI	CCGCTC	1 cut(s)	1037
BsrDI	GCAATG	1 cut(s)	765
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	3 cut(s)	180, 443, 1041
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	36, 96, 1110
BssMI	GATC	5 cut(s)	298, 481, 553, 802, 850
BssNI	GRCGYC	2 cut(s)	41, 47
BssT1I	CCWWGG	3 cut(s)	36, 96, 1110
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	5 cut(s)	61, 468, 497, 738, 841
BstACI	GRCGYC	2 cut(s)	41, 47
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstBAI	YACGTR	2 cut(s)	491, 653
BstC8I	GCNNGC	2 cut(s)	51, 321
BstDEI	CTNAG	5 cut(s)	303, 313, 432, 657, 754
BstDSI	CCRYGG	2 cut(s)	36, 96
BstF5I	GGATG	1 cut(s)	402
BstKTI	GATC	5 cut(s)	301, 484, 556, 805, 853
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	5 cut(s)	298, 481, 553, 802, 850
BstMWI	GCNNNNNNNGC	8 cut(s)	221, 425, 458, 494, 527, 662, 671, 725
BstSCI	CCNGG	1 cut(s)	1021
BstSFI	CTRYAG	1 cut(s)	795
BstV1I	GCAGC	2 cut(s)	403, 406
BstX2I	RGATCY	2 cut(s)	298, 481
BstYI	RGATCY	2 cut(s)	298, 481
BsuRI	GGCC	2 cut(s)	5, 365
BtgI	CCRYGG	2 cut(s)	36, 96
BtsCI	GGATG	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	51, 321
Cfr10I	RCCGGY	1 cut(s)	243
CseI	GACGC	3 cut(s)	30, 55, 347
Csp6I	GTAC	3 cut(s)	288, 409, 442
CspAI	ACCGGT	1 cut(s)	243
CviAII	CATG	3 cut(s)	37, 97, 918
CviQI	GTAC	3 cut(s)	288, 409, 442
DdeI	CTNAG	5 cut(s)	303, 313, 432, 657, 754
DpnI	GATC	5 cut(s)	300, 483, 555, 804, 852
DpnII	GATC	5 cut(s)	298, 481, 553, 802, 850
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	61, 468, 497, 738, 841
EarI	CTCTTC	5 cut(s)	61, 468, 497, 738, 841
EciI	GGCGGA	1 cut(s)	150
Eco130I	CCWWGG	3 cut(s)	36, 96, 1110
Eco24I	GRGCYC	3 cut(s)	148, 217, 836
Eco57I	CTGAAG	1 cut(s)	822
Eco72I	CACGTG	2 cut(s)	491, 653
EcoT14I	CCWWGG	3 cut(s)	36, 96, 1110
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	3 cut(s)	148, 217, 836
ErhI	CCWWGG	3 cut(s)	36, 96, 1110
FaeI	CATG	3 cut(s)	40, 100, 921
FaiI	YATR	9 cut(s)	38, 98, 230, 268, 270, 919, 984, 1000, 1054
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FatI	CATG	3 cut(s)	36, 96, 917
FauI	CCCGC	1 cut(s)	1026
FauNDI	CATATG	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	2 cut(s)	44, 184
Fnu4HI	GCNGC	3 cut(s)	417, 420, 1035
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	3 cut(s)	148, 217, 836
Fsp4HI	GCNGC	3 cut(s)	417, 420, 1035
FspBI	CTAG	3 cut(s)	198, 252, 827
GluI	GCNGC	3 cut(s)	417, 420, 1035
HaeIII	GGCC	2 cut(s)	5, 365
HapII	CCGG	2 cut(s)	244, 1023
HgaI	GACGC	3 cut(s)	30, 55, 347
Hin1I	GRCGYC	2 cut(s)	41, 47
Hin1II	CATG	3 cut(s)	40, 100, 921
HincII	GTYRAC	5 cut(s)	45, 185, 792, 844, 933
HindII	GTYRAC	5 cut(s)	45, 185, 792, 844, 933
HindIII	AAGCTT	3 cut(s)	66, 426, 495
HinfI	GANTC	3 cut(s)	764, 954, 1067
HpaI	GTTAAC	1 cut(s)	792
HpaII	CCGG	2 cut(s)	244, 1023
Hpy166II	GTNNAC	5 cut(s)	45, 185, 792, 844, 933
Hpy188I	TCNGA	3 cut(s)	104, 433, 1072
Hpy188III	TCNNGA	6 cut(s)	115, 198, 302, 329, 806, 1064
Hpy8I	GTNNAC	5 cut(s)	45, 185, 792, 844, 933
Hpy99I	CGWCG	2 cut(s)	46, 49
HpyAV	CCTTC	3 cut(s)	133, 186, 803
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	3 cut(s)	205, 490, 652
HpyCH4V	TGCA	7 cut(s)	272, 278, 422, 488, 665, 674, 857
HpyF10VI	GCNNNNNNNGC	8 cut(s)	221, 425, 458, 494, 527, 662, 671, 725
HpyF3I	CTNAG	5 cut(s)	303, 313, 432, 657, 754
HpySE526I	ACGT	3 cut(s)	205, 490, 652
Hsp92I	GRCGYC	2 cut(s)	41, 47
Hsp92II	CATG	3 cut(s)	40, 100, 921
KpnI	GGTACC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	553
KspAI	GTTAAC	1 cut(s)	792
Kzo9I	GATC	5 cut(s)	298, 481, 553, 802, 850
LguI	GCTCTTC	2 cut(s)	468, 841
LmnI	GCTCC	4 cut(s)	86, 178, 1042, 1084
Lsp1109I	GCAGC	2 cut(s)	403, 406
LweI	GCATC	2 cut(s)	345, 392
MaeI	CTAG	3 cut(s)	198, 252, 827
MaeII	ACGT	3 cut(s)	205, 490, 652
MaeIII	GTNAC	1 cut(s)	1043
MalI	GATC	5 cut(s)	300, 483, 555, 804, 852
MbiI	CCGCTC	1 cut(s)	1037
MboI	GATC	5 cut(s)	298, 481, 553, 802, 850
MfeI	CAATTG	1 cut(s)	924
MflI	RGATCY	2 cut(s)	298, 481
MhlI	GDGCHC	6 cut(s)	148, 217, 226, 658, 721, 836
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	455, 872, 898, 909, 924, 1074
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	108
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	791, 947, 1089
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	244, 1023
MspR9I	CCNGG	1 cut(s)	1023
MunI	CAATTG	1 cut(s)	924
MwoI	GCNNNNNNNGC	8 cut(s)	221, 425, 458, 494, 527, 662, 671, 725
NciI	CCSGG	1 cut(s)	1023
NcoI	CCATGG	2 cut(s)	36, 96
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	5 cut(s)	298, 481, 553, 802, 850
NlaIII	CATG	3 cut(s)	40, 100, 921
NlaIV	GGNNCC	1 cut(s)	443
NsiI	ATGCAT	1 cut(s)	280
PciSI	GCTCTTC	2 cut(s)	468, 841
PfeI	GAWTC	3 cut(s)	764, 954, 1067
PinAI	ACCGGT	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	418, 421, 1036
PmaCI	CACGTG	2 cut(s)	491, 653
PmlI	CACGTG	2 cut(s)	491, 653
Ppu21I	YACGTR	2 cut(s)	491, 653
PspCI	CACGTG	2 cut(s)	491, 653
PspN4I	GGNNCC	1 cut(s)	443
PsuI	RGATCY	2 cut(s)	298, 481
RsaI	GTAC	3 cut(s)	289, 410, 443
RsaNI	GTAC	3 cut(s)	288, 409, 442
SalI	GTCGAC	2 cut(s)	43, 183
SapI	GCTCTTC	2 cut(s)	468, 841
SaqAI	TTAA	3 cut(s)	791, 947, 1089
SatI	GCNGC	3 cut(s)	417, 420, 1035
Sau3AI	GATC	5 cut(s)	298, 481, 553, 802, 850
ScrFI	CCNGG	1 cut(s)	1023
SduI	GDGCHC	6 cut(s)	148, 217, 226, 658, 721, 836
SfaNI	GCATC	2 cut(s)	345, 392
SfcI	CTRYAG	1 cut(s)	795
SgrDI	CGTCGACG	1 cut(s)	43
Sse9I	AATT	6 cut(s)	455, 872, 898, 909, 924, 1074
SsiI	CCGC	5 cut(s)	135, 394, 445, 1019, 1035
SspMI	CTAG	3 cut(s)	198, 252, 827
StyD4I	CCNGG	1 cut(s)	1021
StyI	CCWWGG	3 cut(s)	36, 96, 1110
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	3 cut(s)	208, 493, 655
TaqI	TCGA	4 cut(s)	44, 184, 629, 1063
TasI	AATT	6 cut(s)	455, 872, 898, 909, 924, 1074
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	1037
TfiI	GAWTC	3 cut(s)	764, 954, 1067
Tru1I	TTAA	3 cut(s)	791, 947, 1089
Tru9I	TTAA	3 cut(s)	791, 947, 1089
TseI	GCWGC	2 cut(s)	416, 419
TspDTI	ATGAA	2 cut(s)	245, 350
XbaI	TCTAGA	1 cut(s)	197
XmiI	GTMKAC	2 cut(s)	44, 184
XspI	CTAG	3 cut(s)	198, 252, 827
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.