Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Forward (+)

28253722 .. 28255173

Gene Structure 1452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGTCAGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTCACATCGGAAAACTCATTATAGAAGCGAGCGTGAAAGCCGGACACTCCACACTGGCTCTCGTTAGAGAAGCCTCGCTCTCCGATCCCAACAAGGGCAAAACCGTCCAGAATTTCAAAGATTTTGGCGTCACATTACTTCACGGGGATTTGAACGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGCCGATGTGGTTATATCAACCGTTGGGAGCATGCAAATCTTGGATCAAACCAAGATCATTTCAGCTATTAAAGAAGCCGGTAACGTCAAGAGATTCTTGCCGTCTGAGTTTGGGATGGACGTGGACAAGTCAAGTGCGGTTGAGCCTGCGAAATCGGCTTTTGGGAGGAAACTACAGACAAGGAGAGACATAGAAGCGGAAGGAATACCATACACTTACCTTGTTACCAATTACTTTGCTGGTTACTACTTGCCCACATTGGTTCAGCTGGAGCCAGGTCTCACTTCTCCTCCTAGAGATAAAGTCAAAATTTTCGGAGATGGAAATGTCAAAGCTGTGATCAACAAGGAGGAAGATATTGCTGCTTACACTATCAAAGCGGTGGATGATCCAAGGACTCTGAATAAAACCCTCTACATTAATCCTCCTAACAACACTTTATCGATGAACGAAATAGTCACCTTGTGGGAGAAAAAGATTGGCAAGTCTGTTGAGAAGATTTACATGTCAGAGGAACAAATCTTTAAAAGCATCCAAGAGTCTCCGGTTCCCTTCAACGTTCTTCTGTCGATAAACCACGCGGTGTTTGTGAAAGGAGATCAGACCAATTTCACTATAGAGCCTTCATTCGGTTTTGAAGCCTCTGAGCTTTACCCTGATATCAAGTACACGAGTATTGATGAGTATCTCAGTTATTTCGCTTTAGGAACTTCATTAAACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044464 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

318

Amino Acids

35.05

Weight (kDa)

5.83

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	31 - 334	2.8e-100	NmrA-like family
Epimerase	PF01370	35 - 113	2.2e-07	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	36 - 119	7.9e-07	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	39 - 181	8.2e-16	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	812
AciI	CCGC	4 cut(s)	368, 428, 611, 812
AclI	AACGTT	1 cut(s)	789
AclWI	GGATC	3 cut(s)	122, 282, 614
AcsI	RAATTY	2 cut(s)	154, 540
AcyI	GRCGYC	2 cut(s)	5, 171
AdeI	CACNNNGTG	2 cut(s)	696, 814
AfaI	GTAC	1 cut(s)	899
AfiI	CCNNNNNNNGG	2 cut(s)	137, 860
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	4 cut(s)	160, 196, 787, 869
AjiI	CACGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	5 cut(s)	210, 296, 499, 566, 880
AluI	AGCT	5 cut(s)	210, 296, 499, 566, 880
Alw26I	GTCTC	3 cut(s)	411, 515, 777
AlwI	GGATC	3 cut(s)	122, 282, 614
AoxI	GGCC	2 cut(s)	219, 231
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	2 cut(s)	154, 540
AseI	ATTAAT	1 cut(s)	651
AsuHPI	GGTGA	2 cut(s)	40, 682
BauI	CACGAG	1 cut(s)	901
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	340, 545
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	507
BclI	TGATCA	1 cut(s)	570
BcoDI	GTCTC	3 cut(s)	411, 515, 777
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	2 cut(s)	404, 846
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	507
BmgBI	CACGTC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	504, 780
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	915
BsaHI	GRCGYC	2 cut(s)	5, 171
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	623
BsaWI	WCCGGW	1 cut(s)	775
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 860
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	46, 102
Bse8I	GATNNNNATC	1 cut(s)	915
BseBI	CCWGG	1 cut(s)	507
BseCI	ATCGAT	1 cut(s)	674
BseDI	CCNNGG	1 cut(s)	623
BseGI	GGATG	3 cut(s)	351, 622, 762
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	2 cut(s)	137, 860
BseMII	CTCAG	3 cut(s)	327, 867, 934
BseNI	ACTGG	2 cut(s)	46, 102
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	812
BshFI	GGCC	2 cut(s)	221, 233
BshVI	ATCGAT	1 cut(s)	674
BsiSI	CCGG	3 cut(s)	84, 309, 776
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	137, 860
BsmAI	GTCTC	3 cut(s)	411, 515, 777
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	221, 233
Bso31I	GGTCTC	1 cut(s)	515
Bsp143I	GATC	8 cut(s)	30, 127, 199, 274, 285, 570, 619, 829
BspACI	CCGC	4 cut(s)	368, 428, 611, 812
BspANI	GGCC	2 cut(s)	221, 233
BspCNI	CTCAG	3 cut(s)	328, 868, 933
BspDI	ATCGAT	1 cut(s)	674
BspFNI	CGCG	1 cut(s)	812
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	504, 780
BspPI	GGATC	3 cut(s)	122, 282, 614
BspTNI	GGTCTC	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	46, 102
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	623
BssMI	GATC	8 cut(s)	30, 127, 199, 274, 285, 570, 619, 829
BssNI	GRCGYC	2 cut(s)	5, 171
BssSI	CACGAG	1 cut(s)	901
BssT1I	CCWWGG	1 cut(s)	623
Bst2BI	CACGAG	1 cut(s)	901
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	148, 253
BstACI	GRCGYC	2 cut(s)	5, 171
BstC8I	GCNNGC	3 cut(s)	73, 263, 378
BstDEI	CTNAG	4 cut(s)	211, 336, 876, 920
BstF5I	GGATG	3 cut(s)	351, 622, 762
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	8 cut(s)	33, 130, 202, 277, 288, 573, 622, 832
BstMAI	GTCTC	3 cut(s)	411, 515, 777
BstMBI	GATC	8 cut(s)	30, 127, 199, 274, 285, 570, 619, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	2 cut(s)	265, 739
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	2 cut(s)	404, 846
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	1 cut(s)	580
Bsu15I	ATCGAT	1 cut(s)	674
BsuRI	GGCC	2 cut(s)	221, 233
BsuTUI	ATCGAT	1 cut(s)	674
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	351, 622, 762
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	3 cut(s)	73, 263, 378
CciI	TCATGA	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	308
ClaI	ATCGAT	1 cut(s)	674
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	898
CviAII	CATG	3 cut(s)	203, 262, 736
CviQI	GTAC	1 cut(s)	898
DdeI	CTNAG	4 cut(s)	211, 336, 876, 920
DpnI	GATC	8 cut(s)	32, 129, 201, 276, 287, 572, 621, 831
DpnII	GATC	8 cut(s)	30, 127, 199, 274, 285, 570, 619, 829
DraI	TTTAAA	1 cut(s)	757
DraIII	CACNNNGTG	2 cut(s)	696, 814
Eco130I	CCWWGG	1 cut(s)	623
Eco31I	GGTCTC	1 cut(s)	515
Eco32I	GATATC	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	892
EcoT14I	CCWWGG	1 cut(s)	623
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	3 cut(s)	206, 265, 739
FaiI	YATR	8 cut(s)	65, 204, 245, 263, 422, 442, 737, 848
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	3 cut(s)	202, 261, 735
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	3 cut(s)	358, 629, 749
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	221, 233
HapII	CCGG	3 cut(s)	84, 309, 776
HgaI	GACGC	1 cut(s)	160
Hin1I	GRCGYC	2 cut(s)	5, 171
Hin1II	CATG	3 cut(s)	206, 265, 739
HinfI	GANTC	4 cut(s)	22, 324, 628, 770
HpaII	CCGG	3 cut(s)	84, 309, 776
HphI	GGTGA	2 cut(s)	40, 682
Hpy166II	GTNNAC	2 cut(s)	355, 900
Hpy188III	TCNNGA	3 cut(s)	151, 203, 319
Hpy8I	GTNNAC	2 cut(s)	355, 900
HpyAV	CCTTC	4 cut(s)	211, 425, 793, 864
HpyCH4III	ACNGT	2 cut(s)	148, 253
HpyCH4IV	ACGT	3 cut(s)	315, 351, 789
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	4 cut(s)	211, 336, 876, 920
HpySE526I	ACGT	3 cut(s)	315, 351, 789
Hsp92I	GRCGYC	2 cut(s)	5, 171
Hsp92II	CATG	3 cut(s)	206, 265, 739
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	8 cut(s)	30, 127, 199, 274, 285, 570, 619, 829
LmnI	GCTCC	2 cut(s)	258, 502
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	1 cut(s)	771
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	3 cut(s)	315, 351, 789
MaeIII	GTNAC	6 cut(s)	44, 172, 311, 454, 473, 688
MalI	GATC	8 cut(s)	32, 129, 201, 276, 287, 572, 621, 831
MboI	GATC	8 cut(s)	30, 127, 199, 274, 285, 570, 619, 829
MboII	GAAGA	3 cut(s)	596, 739, 785
MluCI	AATT	4 cut(s)	154, 460, 540, 838
MlyI	GAGTC	2 cut(s)	622, 779
MnlI	CCTC	9 cut(s)	29, 127, 390, 531, 574, 653, 666, 736, 883
MseI	TTAA	5 cut(s)	225, 300, 651, 756, 947
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	3 cut(s)	84, 309, 776
MspR9I	CCNGG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	8 cut(s)	30, 127, 199, 274, 285, 570, 619, 829
NlaIII	CATG	3 cut(s)	206, 265, 739
NlaIV	GGNNCC	2 cut(s)	504, 780
NmuCI	GTSAC	3 cut(s)	44, 172, 688
NspI	RCATGY	2 cut(s)	265, 739
PaeI	GCATGC	1 cut(s)	265
PagI	TCATGA	1 cut(s)	202
PciI	ACATGT	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	22, 324
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	2 cut(s)	622, 778
PpsI	GAGTC	2 cut(s)	622, 778
PscI	ACATGT	1 cut(s)	735
PshBI	ATTAAT	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	504, 780
PvuII	CAGCTG	1 cut(s)	499
RsaI	GTAC	1 cut(s)	899
RsaNI	GTAC	1 cut(s)	898
SaqAI	TTAA	5 cut(s)	225, 300, 651, 756, 947
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	8 cut(s)	30, 127, 199, 274, 285, 570, 619, 829
SchI	GAGTC	2 cut(s)	622, 779
ScrFI	CCNGG	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	771
SfcI	CTRYAG	2 cut(s)	404, 846
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	4 cut(s)	154, 460, 540, 838
SsiI	CCGC	4 cut(s)	368, 428, 611, 812
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	2 cut(s)	148, 253
TaiI	ACGT	3 cut(s)	318, 354, 792
TaqI	TCGA	2 cut(s)	674, 800
TasI	AATT	4 cut(s)	154, 460, 540, 838
TatI	WGTACW	1 cut(s)	897
TfiI	GAWTC	2 cut(s)	22, 324
Tru1I	TTAA	5 cut(s)	225, 300, 651, 756, 947
Tru9I	TTAA	5 cut(s)	225, 300, 651, 756, 947
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	3 cut(s)	44, 172, 688
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	3 cut(s)	44, 172, 688
TspDTI	ATGAA	3 cut(s)	692, 846, 933
TspRI	CASTG	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	2 cut(s)	154, 540
XceI	RCATGY	2 cut(s)	265, 739
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.