Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Forward (+)

61145922 .. 61148391

Gene Structure 2470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG417000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTGATCCTCAGGAAAGCAAGATTTTGGTAATTGGAGGCACCGGCTACATCGGCAAGGTCATCATCGGAGCTAGCGCAAAGGCTAACCATCCTAGCTTTGTTCTTGTTGGGGAAACCAATATGCCAAAGGAAAACTCATTCAAAATTTCAAGAACTTGGGTGTCAGTTGTCACTGTATATACGGCTATCTGTTTCTGCCGAATTACTTTGTTCTTACATTCAGTTAATTATTCTACTTTGATCGCAAAGGGAGATCTTCATGATGGACTTGACTGTTTGGCGAAGGTGATCAAACAGGTAGACGTGGTGATTTCAGCTGTGAATCGCATGCAGTTAGTAGATCAAACCAAGATCAATGCCGCCATTGAAGAAGCCGGTAATGTCAAGGCTATTTTCTACCCATGCACATTGGCACAGCCAGGTGCTACTTCTCCACCAAGAGACAAAGTCATCATCGTAGGGGATGGAAATCCAAAGGCAATCTTTGTCAAGGAAGAGGACATCAGCACCTACACAATCCGAGCAGTCGATGATCCAAGAACACTGAACAAGGTCCTCTACCTCAAGCCTCCCAAAAACATTTACTCATTCAATGAACTGGTTGCCTTGTGGGAGAAGAAATTTGGCAAAGCCCTCGGGAAGGTCTATGTTCCAGAGGACAAACTCCTCAACGATATTATGGAGACCCCATTTCCCCAAAATGTGATATTGGCGATCAACCACTCTGTGTTTGTGAAAGGAGATCAAACCAACTTCGAGATTGAATACACAGCTGTGGAGGACTACCTCGATCAATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

268

Amino Acids

29.66

Weight (kDa)

6.12

Isoelectric Point (pI)

22.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	6 - 134	3.7e-16	NmrA-like family
NmrA	PF05368	142 - 258	4.5e-24	NmrA-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	2 cut(s)	2, 530
AcsI	RAATTY	2 cut(s)	147, 623
AdeI	CACNNNGTG	1 cut(s)	730
AfiI	CCNNNNNNNGG	1 cut(s)	643
AgsI	TTSAA	5 cut(s)	145, 153, 371, 595, 767
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	421
AleI	CACNNNNGTG	1 cut(s)	776
AluBI	AGCT	4 cut(s)	74, 99, 320, 776
AluI	AGCT	4 cut(s)	74, 99, 320, 776
Alw26I	GTCTC	2 cut(s)	438, 680
AlwI	GGATC	2 cut(s)	2, 530
Ama87I	CYCGRG	1 cut(s)	638
ApoI	RAATTY	2 cut(s)	147, 623
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	556
AsuHPI	GGTGA	2 cut(s)	301, 322
AsuNHI	GCTAGC	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	556
AxyI	CCTNAGG	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	41
BccI	CCATC	3 cut(s)	99, 260, 461
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciT130I	CCWGG	1 cut(s)	423
BclI	TGATCA	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	438, 680
BfaI	CTAG	2 cut(s)	75, 96
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	556
BmeT110I	CYCGRG	1 cut(s)	638
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	423
BmtI	GCTAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	680
BsaJI	CCNNGG	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse118I	RCCGGY	2 cut(s)	44, 377
Bse1I	ACTGG	1 cut(s)	606
Bse21I	CCTNAGG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	2 cut(s)	91, 472
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	1 cut(s)	659
BshNI	GGYRCC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	45, 378
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	2 cut(s)	438, 680
Bso31I	GGTCTC	1 cut(s)	680
BsoBI	CYCGRG	1 cut(s)	638
BspACI	CCGC	1 cut(s)	363
BspCNI	CTCAG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	2, 530
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	680
BsrFI	RCCGGY	2 cut(s)	44, 377
BsrI	ACTGG	1 cut(s)	606
BssAI	RCCGGY	2 cut(s)	44, 377
BssECI	CCNNGG	1 cut(s)	637
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	178, 278
Bst6I	CTCTTC	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	76, 332
BstDEI	CTNAG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	641
BstF5I	GGATG	2 cut(s)	91, 472
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	2 cut(s)	438, 680
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu36I	CCTNAGG	1 cut(s)	12
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	91, 472
BtsIMutI	CAGTG	2 cut(s)	174, 545
Cac8I	GCNNGC	2 cut(s)	76, 332
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	2 cut(s)	44, 377
Cfr13I	GGNCC	1 cut(s)	556
CviAII	CATG	3 cut(s)	263, 331, 405
DdeI	CTNAG	1 cut(s)	12
DraIII	CACNNNGTG	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	680
Eco47I	GGWCC	1 cut(s)	556
Eco81I	CCTNAGG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	638
EcoNI	CCTNNNNNAGG	1 cut(s)	641
EcoO109I	RGGNCCY	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	421
FaeI	CATG	3 cut(s)	266, 334, 408
FaiI	YATR	8 cut(s)	125, 181, 183, 264, 332, 406, 651, 683
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	3 cut(s)	262, 330, 404
FbaI	TGATCA	1 cut(s)	291
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	2 cut(s)	78, 479
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	75, 96
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	363
HapII	CCGG	2 cut(s)	45, 378
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	266, 334, 408
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	2 cut(s)	45, 378
HphI	GGTGA	2 cut(s)	301, 322
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	71, 524
Hpy188III	TCNNGA	6 cut(s)	14, 153, 263, 640, 656, 760
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	280, 637
HpyCH4III	ACNGT	2 cut(s)	178, 278
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	334, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	266, 334, 408
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	7 cut(s)	58, 284, 391, 408, 435, 587, 669
MaeI	CTAG	2 cut(s)	75, 96
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	251, 383, 509, 631
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	6 cut(s)	33, 147, 204, 229, 623, 797
MseI	TTAA	2 cut(s)	228, 805
MslI	CAYNNNNRTG	1 cut(s)	776
MspA1I	CMGCKG	2 cut(s)	320, 776
MspI	CCGG	2 cut(s)	45, 378
MspR9I	CCNGG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	54
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	3 cut(s)	266, 334, 408
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	776
PaeI	GCATGC	1 cut(s)	334
PagI	TCATGA	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	325
PflFI	GACNNNGTC	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	364
PpuMI	RGGWCCY	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	556
PspPPI	RGGWCCY	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	449
PvuII	CAGCTG	2 cut(s)	320, 776
RseI	CAYNNNNRTG	1 cut(s)	776
SaqAI	TTAA	2 cut(s)	228, 805
SatI	GCNGC	1 cut(s)	363
Sau96I	GGNCC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SphI	GCATGC	1 cut(s)	334
Sse9I	AATT	6 cut(s)	33, 147, 204, 229, 623, 797
SsiI	CCGC	1 cut(s)	363
SspMI	CTAG	2 cut(s)	75, 96
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	178, 278
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	531, 759, 792
TasI	AATT	6 cut(s)	33, 147, 204, 229, 623, 797
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	2 cut(s)	228, 805
Tru9I	TTAA	2 cut(s)	228, 805
TscAI	CASTG	2 cut(s)	181, 552
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	251, 612
TspRI	CASTG	2 cut(s)	181, 552
Tth111I	GACNNNGTC	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	556
XagI	CCTNNNNNAGG	1 cut(s)	641
XapI	RAATTY	2 cut(s)	147, 623
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	2 cut(s)	75, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.