Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Reverse (-)

8070226 .. 8072259

Gene Structure 2034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011263

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTAGTCCTCAGAAAAGCAAGATTTTGGTAATCGGAGGCACCGGCTACATCGGCAAGTTCATCGTTGAAGCGAGCGCAAAGGCTAATCATCCCACATTTGCTCTTGTTAGGGAGACCGCCGTCAATGACCCTGCCAAGGGAAAACTTATTCAAAATTTCAAGAACTTGGGAGTCACTTTGCTCTATGGAGATCTCAATGATGAGCACGAGAGTTTGGTGAAGGTGATCAAAAAGGTGGACGTGGTGATATCAACAGTGGCTGGCAGGCCGCTACCAGATCAAACCAAGCTCATTGCCGCTATTAAAGCAGCTGGTAATGTCAAGAGATTCCTCCCCTCGGAGTTCGGAAACGATGTGGATCATGTAAAGGATGCAGTTGAGCCGGCCAAATCTGTAGTTGCGAGCAAAGCCCAAATCCGGCAGGCCGAGGGGATTCCCTACACATATGTCTCCTGCAACTGCTTTGCAGGCTATTTTCTACCCACACTGGCACAGCCAGATGCCACTTCTCCACCCAGAGACAAAGTCATCATCTTAGGGGATGGAAATGCAAAGGCAATCTTTGCCGAGGAAGAGGACATTAGCACCTATACAATCCGAGCAGTTGATGACCCAAGAACACTGAACAAGGTTCTCCACCTCAGGCCTCCTCGAAACATATACTCCTTCAATGAACTCGTTGCCTTGTGGGAGAAGAAAATCGGCAAACTACTTGAGAAGGTCTATGTTCCAGAGGACAAACTCCTCAATGATATTATAGAGACCCCATTTCCCAAAAATGTGATATTGGCCATCAACCATTCTGTGTTTGTAAAAGGAGATCAAACCAGCTTTGAGATTGAGCCATCGATCGGAGTTGAAGCTTCCGAGCTATACCCGGATGTTGAATACACTACTGTGGAGGACTACCTCAACCAATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

310

Amino Acids

34.0

Weight (kDa)

5.66

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 305	3.6e-88	NmrA-like family
Epimerase	PF01370	9 - 90	3.9e-07	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	13 - 150	2.4e-11	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	3 cut(s)	120, 272, 300
AclWI	GGATC	1 cut(s)	369
AcoI	YGGCCR	2 cut(s)	387, 792
AcsI	RAATTY	1 cut(s)	157
AfiI	CCNNNNNNNGG	5 cut(s)	139, 140, 340, 420, 854
AgsI	TTSAA	6 cut(s)	71, 155, 163, 673, 863, 890
AjiI	CACGTC	1 cut(s)	244
AleI	CACNNNNGTG	1 cut(s)	899
AluBI	AGCT	5 cut(s)	292, 314, 834, 866, 874
AluI	AGCT	5 cut(s)	292, 314, 834, 866, 874
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	4 cut(s)	110, 457, 516, 758
AlwI	GGATC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	5 cut(s)	269, 387, 426, 647, 792
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	881
AsuHPI	GGTGA	3 cut(s)	232, 238, 259
AxyI	CCTNAGG	1 cut(s)	644
BalI	TGGCCA	1 cut(s)	794
BanI	GGYRCC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	3 cut(s)	539, 803, 856
BceAI	ACGGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	4 cut(s)	110, 457, 516, 758
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	396
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	3 cut(s)	272, 300, 312
BlsI	GCNGC	3 cut(s)	273, 301, 313
Bme1390I	CCNGG	1 cut(s)	881
BmgBI	CACGTC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	881
BmsI	GCATC	2 cut(s)	364, 493
BoxI	GACNNNNGTC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	881
Bsa29I	ATCGAT	1 cut(s)	851
BsaBI	GATNNNNATC	1 cut(s)	360
BsaI	GGTCTC	2 cut(s)	110, 758
BsaJI	CCNNGG	4 cut(s)	138, 339, 429, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	650, 680
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 140, 340, 420, 854
Bse118I	RCCGGY	2 cut(s)	44, 385
Bse1I	ACTGG	1 cut(s)	495
Bse21I	CCTNAGG	1 cut(s)	644
Bse3DI	GCAATG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	360
BseCI	ATCGAT	1 cut(s)	851
BseDI	CCNNGG	4 cut(s)	138, 339, 429, 570
BseGI	GGATG	4 cut(s)	91, 379, 550, 889
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	5 cut(s)	139, 140, 340, 420, 854
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	26, 658
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	2 cut(s)	642, 737
BseXI	GCAGC	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	855
BshFI	GGCC	5 cut(s)	271, 389, 428, 649, 794
BshNI	GGYRCC	1 cut(s)	41
BshVI	ATCGAT	1 cut(s)	851
BsiEI	CGRYCG	1 cut(s)	855
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	4 cut(s)	45, 386, 421, 881
BslI	CCNNNNNNNGG	5 cut(s)	139, 140, 340, 420, 854
BsmAI	GTCTC	4 cut(s)	110, 457, 516, 758
BsnI	GGCC	5 cut(s)	271, 389, 428, 649, 794
Bso31I	GGTCTC	2 cut(s)	110, 758
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	6 cut(s)	193, 228, 280, 361, 823, 852
BspACI	CCGC	3 cut(s)	120, 272, 300
BspANI	GGCC	5 cut(s)	271, 389, 428, 649, 794
BspCNI	CTCAG	2 cut(s)	25, 657
BspDI	ATCGAT	1 cut(s)	851
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	2 cut(s)	110, 758
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	2 cut(s)	44, 385
BsrI	ACTGG	1 cut(s)	495
BssAI	RCCGGY	2 cut(s)	44, 385
BssECI	CCNNGG	4 cut(s)	138, 339, 429, 570
BssMI	GATC	6 cut(s)	193, 228, 280, 361, 823, 852
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	259, 901
Bst6I	CTCTTC	1 cut(s)	570
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	7 cut(s)	76, 265, 269, 387, 406, 426, 472
BstDEI	CTNAG	3 cut(s)	12, 538, 644
BstF5I	GGATG	4 cut(s)	91, 379, 550, 889
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	6 cut(s)	196, 231, 283, 364, 826, 855
BstMAI	GTCTC	4 cut(s)	110, 457, 516, 758
BstMBI	GATC	6 cut(s)	193, 228, 280, 361, 823, 852
BstMCI	CGRYCG	1 cut(s)	855
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 308, 410, 471, 566
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	879
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	851
Bsu36I	CCTNAGG	1 cut(s)	644
BsuRI	GGCC	5 cut(s)	271, 389, 428, 649, 794
BsuTUI	ATCGAT	1 cut(s)	851
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	4 cut(s)	91, 379, 550, 889
BtsIMutI	CAGTG	3 cut(s)	264, 488, 623
Cac8I	GCNNGC	7 cut(s)	76, 265, 269, 387, 406, 426, 472
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	2 cut(s)	44, 385
ClaI	ATCGAT	1 cut(s)	851
CviAII	CATG	1 cut(s)	365
DdeI	CTNAG	3 cut(s)	12, 538, 644
DpnI	GATC	6 cut(s)	195, 230, 282, 363, 825, 854
DpnII	GATC	6 cut(s)	193, 228, 280, 361, 823, 852
EaeI	YGGCCR	2 cut(s)	387, 792
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	649
Eco31I	GGTCTC	2 cut(s)	110, 758
Eco32I	GATATC	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	644
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	368
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FatI	CATG	1 cut(s)	364
FauNDI	CATATG	1 cut(s)	448
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	272, 300, 312
FokI	GGATG	4 cut(s)	78, 386, 557, 896
Fsp4HI	GCNGC	3 cut(s)	272, 300, 312
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	272, 300, 312
HaeIII	GGCC	5 cut(s)	271, 389, 428, 649, 794
HapII	CCGG	4 cut(s)	45, 386, 421, 881
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	3 cut(s)	174, 330, 436
HpaII	CCGG	4 cut(s)	45, 386, 421, 881
HphI	GGTGA	3 cut(s)	232, 238, 259
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	7 cut(s)	15, 38, 343, 350, 602, 857, 871
Hpy188III	TCNNGA	3 cut(s)	163, 325, 734
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	3 cut(s)	217, 679, 715
HpyCH4III	ACNGT	2 cut(s)	259, 901
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	377, 459, 470, 554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 308, 410, 471, 566
HpyF3I	CTNAG	3 cut(s)	12, 538, 644
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	78
KroI	GCCGGC	1 cut(s)	385
KroNI	GCCGGC	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	6 cut(s)	193, 228, 280, 361, 823, 852
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	2 cut(s)	364, 493
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	6 cut(s)	195, 230, 282, 363, 825, 854
MboI	GATC	6 cut(s)	193, 228, 280, 361, 823, 852
MboII	GAAGA	2 cut(s)	587, 709
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	2 cut(s)	157, 920
MluNI	TGGCCA	1 cut(s)	794
MlyI	GAGTC	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	794
MroNI	GCCGGC	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	794
MseI	TTAA	2 cut(s)	306, 928
MslI	CAYNNNNRTG	1 cut(s)	899
Msp20I	TGGCCA	1 cut(s)	794
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	4 cut(s)	45, 386, 421, 881
MspR9I	CCNGG	1 cut(s)	881
MwoI	GCNNNNNNNGC	5 cut(s)	54, 308, 410, 471, 566
NaeI	GCCGGC	1 cut(s)	387
NciI	CCSGG	1 cut(s)	881
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	6 cut(s)	193, 228, 280, 361, 823, 852
NgoMIV	GCCGGC	1 cut(s)	385
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	2 cut(s)	454, 595
NmuCI	GTSAC	1 cut(s)	175
OliI	CACNNNNGTG	1 cut(s)	899
PceI	AGGCCT	1 cut(s)	649
PdiI	GCCGGC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	330, 436
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	3 cut(s)	273, 301, 313
Ple19I	CGATCG	1 cut(s)	855
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PshAI	GACNNNNGTC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	527
PvuI	CGATCG	1 cut(s)	855
PvuII	CAGCTG	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	899
SaqAI	TTAA	2 cut(s)	306, 928
SatI	GCNGC	3 cut(s)	272, 300, 312
Sau3AI	GATC	6 cut(s)	193, 228, 280, 361, 823, 852
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	881
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	364, 493
SfcI	CTRYAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	899
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	2 cut(s)	157, 920
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	3 cut(s)	120, 272, 300
SspMI	CTAG	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	649
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	259, 901
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	655, 851
TasI	AATT	2 cut(s)	157, 920
TauI	GCSGC	2 cut(s)	274, 302
TfiI	GAWTC	2 cut(s)	330, 436
Tru1I	TTAA	2 cut(s)	306, 928
Tru9I	TTAA	2 cut(s)	306, 928
TscAI	CASTG	3 cut(s)	264, 495, 630
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	52, 690
TspRI	CASTG	3 cut(s)	264, 495, 630
Tth111I	GACNNNGTC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	157
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.