Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013354.1

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Forward (+)

67243 .. 68677

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013354.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggccgctcagaaaagcaagatcttgatcatcggaggcaccggctatataggcaagttcattgtcgaagcgagcgcaaaggctagccatcccacctttcttcttgttagggagaccacagtcaatgaccctgccaagggagctctcattcagaacttcaagaactcgggggtaactttgctctatggggatctttatgatcatgagagcttggtgaaggcgatcaaacaggtcgatgtggtgatatcagcggtgggccacatgcagatagcagatcaaaccaagataattgcggccatcaaagaagctggtaatgtcaagagattcttcccctcggaatttggaaacgatgtggatcgtgtacatgcggttgagccagcaaaatctgcatttgcaatgaaagcccaaatccgccgcgctatagaggctgaggggataccctacacttatgtctccagcaactgctttgcagcctattttctgcccacgttggcacagccaggagccacttctccacccagagacaaagtcatcatcttaggggatggaaatgcaaaggcaatcttcaacaaggaagacgacattggcacctatacgatccgagcggttgatgatccaagaacactgaacaaggtcctctacctcaagcctcctagaaacatttactccttcaatgaactggttgccttgtgggagaagaaaattggcaaagttcttgagaaggtctatgttccagaggacaaactcctcagcgacattcttgaggctcccattccgatcaatgtgatattggcaatcaaccactctgtgttcgtgaaaggagatcataccaacttcgagatcgagccgtctttcggagtcgaagcctccgagctgtacccggatgttaagtacaccactgtggaggagtatctcgaccaatttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

309

Amino Acids

34.08

Weight (kDa)

5.92

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	38, 587
AccBSI	CCGCTC	2 cut(s)	8, 605
AccII	CGCG	1 cut(s)	417
AciI	CCGC	7 cut(s)	6, 251, 293, 368, 412, 415, 605
AclWI	GGATC	4 cut(s)	198, 363, 592, 608
AcoI	YGGCCR	2 cut(s)	3, 294
AcsI	RAATTY	1 cut(s)	338
AdeI	CACNNNGTG	1 cut(s)	808
AfaI	GTAC	3 cut(s)	363, 878, 893
AfiI	CCNNNNNNNGG	3 cut(s)	136, 137, 854
AgsI	TTSAA	3 cut(s)	160, 568, 673
AjnI	CCWGG	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AleI	CACNNNNGTG	1 cut(s)	899
AluBI	AGCT	4 cut(s)	143, 210, 308, 874
AluI	AGCT	4 cut(s)	143, 210, 308, 874
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	3 cut(s)	107, 457, 516
AlwI	GGATC	4 cut(s)	198, 363, 592, 608
AlwNI	CAGNNNCTG	1 cut(s)	462
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	3 cut(s)	3, 256, 294
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	77, 419
AspS9I	GGNCC	2 cut(s)	256, 634
AsuC2I	CCSGG	1 cut(s)	881
AsuHPI	GGTGA	2 cut(s)	226, 253
AsuNHI	GCTAGC	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	634
BanI	GGYRCC	2 cut(s)	38, 587
BanII	GRGCYC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	145
BbvCI	CCTCAGC	2 cut(s)	429, 749
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	3 cut(s)	96, 305, 539
BceAI	ACGGC	1 cut(s)	832
BciT130I	CCWGG	1 cut(s)	501
BciVI	GTATCC	1 cut(s)	429
BclI	TGATCA	2 cut(s)	27, 199
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	3 cut(s)	107, 457, 516
BfaI	CTAG	2 cut(s)	84, 654
BfmI	CTRYAG	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	429
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	4 cut(s)	6, 294, 415, 471
BlsI	GCNGC	4 cut(s)	7, 295, 416, 472
Bme1390I	CCNGG	2 cut(s)	501, 881
Bme18I	GGWCC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	256, 634
BmiI	GGNNCC	4 cut(s)	40, 505, 589, 768
BmrFI	CCNGG	2 cut(s)	501, 881
BmtI	GCTAGC	1 cut(s)	87
BoxI	GACNNNNGTC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	582
BpmI	CTGGAG	1 cut(s)	439
Bpu10I	CCTNAGC	2 cut(s)	429, 749
BpuEI	CTTGAG	3 cut(s)	629, 737, 782
BpuMI	CCSGG	1 cut(s)	881
BsaBI	GATNNNNATC	2 cut(s)	26, 354
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	135, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	650, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 137, 854
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	684
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	2 cut(s)	26, 354
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	135, 333
BseGI	GGATG	3 cut(s)	88, 550, 889
BseJI	GATNNNNATC	2 cut(s)	26, 354
BseLI	CCNNNNNNNGG	3 cut(s)	136, 137, 854
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	3 cut(s)	23, 420, 763
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	2 cut(s)	737, 920
BseXI	GCAGC	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	3 cut(s)	5, 258, 296
BshNI	GGYRCC	2 cut(s)	38, 587
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	42, 881
BslI	CCNNNNNNNGG	3 cut(s)	136, 137, 854
BsmAI	GTCTC	3 cut(s)	107, 457, 516
BsnI	GGCC	3 cut(s)	5, 258, 296
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	361
BspACI	CCGC	7 cut(s)	6, 251, 293, 368, 412, 415, 605
BspANI	GGCC	3 cut(s)	5, 258, 296
BspCNI	CTCAG	3 cut(s)	22, 421, 762
BspFNI	CGCG	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	4 cut(s)	40, 505, 589, 768
BspOI	GCTAGC	1 cut(s)	87
BspPI	GGATC	4 cut(s)	198, 363, 592, 608
BspT107I	GGYRCC	2 cut(s)	38, 587
BspTNI	GGTCTC	1 cut(s)	107
BsrBI	CCGCTC	2 cut(s)	8, 605
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	684
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	135, 333
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	121, 901
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstAUI	TGTACA	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	73, 85, 378
BstDEI	CTNAG	4 cut(s)	9, 429, 538, 749
BstF5I	GGATG	3 cut(s)	88, 550, 889
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	2 cut(s)	77, 419
BstMAI	GTCTC	3 cut(s)	107, 457, 516
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 140, 386, 401, 425
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	2 cut(s)	265, 368
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	499, 879
BstSFI	CTRYAG	1 cut(s)	420
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	2 cut(s)	21, 190
BstYI	RGATCY	2 cut(s)	21, 190
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	3 cut(s)	5, 258, 296
BtsCI	GGATG	3 cut(s)	88, 550, 889
BtsIMutI	CAGTG	2 cut(s)	623, 897
Cac8I	GCNNGC	3 cut(s)	73, 85, 378
CaiI	CAGNNNCTG	1 cut(s)	462
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	2 cut(s)	77, 419
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	256, 634
Csp6I	GTAC	3 cut(s)	362, 877, 892
CviAII	CATG	3 cut(s)	203, 262, 365
CviQI	GTAC	3 cut(s)	362, 877, 892
DdeI	CTNAG	4 cut(s)	9, 429, 538, 749
DraIII	CACNNNGTG	1 cut(s)	808
EaeI	YGGCCR	2 cut(s)	3, 294
EciI	GGCGGA	1 cut(s)	401
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	206, 265, 368
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 548, 580
FatI	CATG	3 cut(s)	202, 261, 364
FbaI	TGATCA	2 cut(s)	27, 199
Fnu4HI	GCNGC	4 cut(s)	6, 294, 415, 471
FokI	GGATG	3 cut(s)	75, 557, 896
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	6, 294, 415, 471
FspBI	CTAG	2 cut(s)	84, 654
GlaI	GCGC	2 cut(s)	76, 418
GluI	GCNGC	4 cut(s)	6, 294, 415, 471
GsuI	CTGGAG	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	5, 258, 296
HapII	CCGG	2 cut(s)	42, 881
HhaI	GCGC	2 cut(s)	77, 419
Hin1II	CATG	3 cut(s)	206, 265, 368
Hin6I	GCGC	2 cut(s)	75, 417
HinP1I	GCGC	2 cut(s)	75, 417
HinfI	GANTC	2 cut(s)	324, 858
HpaII	CCGG	2 cut(s)	42, 881
HphI	GGTGA	2 cut(s)	226, 253
Hpy166II	GTNNAC	2 cut(s)	362, 894
Hpy188I	TCNGA	8 cut(s)	12, 35, 153, 337, 602, 777, 857, 871
Hpy8I	GTNNAC	2 cut(s)	362, 894
HpyAV	CCTTC	3 cut(s)	211, 679, 715
HpyCH4III	ACNGT	2 cut(s)	121, 901
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	5 cut(s)	265, 389, 395, 470, 554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 140, 386, 401, 425
HpyF3I	CTNAG	4 cut(s)	9, 429, 538, 749
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	3 cut(s)	206, 265, 368
HspAI	GCGC	2 cut(s)	75, 417
Ksp22I	TGATCA	2 cut(s)	27, 199
LmnI	GCTCC	3 cut(s)	140, 503, 772
Lsp1109I	GCAGC	1 cut(s)	482
MaeI	CTAG	2 cut(s)	84, 654
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	1 cut(s)	172
MbiI	CCGCTC	2 cut(s)	8, 605
MboII	GAAGA	5 cut(s)	92, 319, 556, 587, 709
MflI	RGATCY	2 cut(s)	21, 190
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	4 cut(s)	288, 338, 702, 920
MlyI	GAGTC	1 cut(s)	867
MseI	TTAA	2 cut(s)	888, 928
MslI	CAYNNNNRTG	1 cut(s)	899
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	2 cut(s)	42, 881
MspR9I	CCNGG	2 cut(s)	501, 881
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	51, 140, 386, 401, 425
NciI	CCSGG	1 cut(s)	881
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	3 cut(s)	206, 265, 368
NlaIV	GGNNCC	4 cut(s)	40, 505, 589, 768
NspI	RCATGY	2 cut(s)	265, 368
OliI	CACNNNNGTG	1 cut(s)	899
PagI	TCATGA	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PfeI	GAWTC	1 cut(s)	324
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	4 cut(s)	7, 295, 416, 472
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
PpuMI	RGGWCCY	1 cut(s)	634
PshAI	GACNNNNGTC	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	4 cut(s)	40, 505, 589, 768
PspPI	GGNCC	2 cut(s)	256, 634
PspPPI	RGGWCCY	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	462
PsuI	RGATCY	2 cut(s)	21, 190
PsyI	GACNNNGTC	1 cut(s)	527
RsaI	GTAC	3 cut(s)	363, 878, 893
RsaNI	GTAC	3 cut(s)	362, 877, 892
RseI	CAYNNNNRTG	1 cut(s)	899
SacI	GAGCTC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	888, 928
SatI	GCNGC	4 cut(s)	6, 294, 415, 471
Sau96I	GGNCC	2 cut(s)	256, 634
SchI	GAGTC	1 cut(s)	867
ScrFI	CCNGG	2 cut(s)	501, 881
SduI	GDGCHC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	899
SmlI	CTYRAG	3 cut(s)	644, 716, 761
SmoI	CTYRAG	3 cut(s)	644, 716, 761
Sse9I	AATT	4 cut(s)	288, 338, 702, 920
SsiI	CCGC	7 cut(s)	6, 251, 293, 368, 412, 415, 605
SspMI	CTAG	2 cut(s)	84, 654
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	499, 879
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	121, 901
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	6 cut(s)	66, 234, 837, 843, 861, 915
TasI	AATT	4 cut(s)	288, 338, 702, 920
TatI	WGTACW	2 cut(s)	361, 891
TauI	GCSGC	3 cut(s)	8, 296, 417
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	888, 928
Tru9I	TTAA	2 cut(s)	888, 928
TscAI	CASTG	2 cut(s)	630, 904
TseI	GCWGC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	49, 413, 690
TspRI	CASTG	2 cut(s)	630, 904
Tth111I	GACNNNGTC	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	2 cut(s)	265, 368
XspI	CTAG	2 cut(s)	84, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.