Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Reverse (-)

2128541 .. 2130234

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1029400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTGATTAATATGCAGGGCGATCTTTATGACCATGAGAGTTTGGTGAAAGCGATCAAACAGGGATACGTTGTGATATCGACAGTGGGTTTCCTGCAAACTGCAGACCAAACCAAGATCATTGCAGCCATCAAAGAAGCTGGCAATGTCAAGAGATTTTTCCCGACGGAGTTTGCAAACGATGTGGATCGATTGCACGCAGTTGAGCCAGCCAAGTCTACGTTTGACGTCAAGGTCCAAATCCGGCGTGCTATTGAGGCTGAGGGTATCCCCTACACTTATGTCTCCAGCAACTGCTTTGCTGTCTACTTTCTGCCCTCATTGTCACAGCCAGGTGCCACTTCTCCACCCAGAGACAAAGTCATCGTCGTAGGGGATGGAAACAAAAAAGCTGTCTTTAACAAGGAAGATGACATTGGAACCTATACAATCAGGGCCGTTGATGATCCAAGAACATTGAACAAGATCCTCTACCTGAGACCTCCCCAGGACATCTACTCATTCAATCAGCTTGTTGCCCTGTGGGAGAAAAAGATTGACAAAGTCCTTGAAAAAGTCTATGCCCCAATTCCAATCAATGTGATATTAGCAATCAACCACTCAGTGTATGTGAAGGGAGATAAGACCAACTTCGAAATCGAGCCGTCGTTTGGAGTCGAGGCTTATCAGCTCTACCCTGATGTTAAGTACACAACTGTGGACGAGTACCTCGACCAATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

242

Amino Acids

27.18

Weight (kDa)

5.48

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 237	4.9e-68	NmrA-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AatII	GACGTC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	335
AccI	GTMKAC	2 cut(s)	218, 306
AclWI	GGATC	3 cut(s)	195, 440, 460
AcyI	GRCGYC	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	604
AfaI	GTAC	2 cut(s)	689, 707
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	460, 505, 551
AjnI	CCWGG	2 cut(s)	331, 486
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	4 cut(s)	140, 392, 511, 670
AluI	AGCT	4 cut(s)	140, 392, 511, 670
Alw26I	GTCTC	3 cut(s)	289, 348, 472
AlwI	GGATC	3 cut(s)	195, 440, 460
AlwNI	CAGNNNCTG	1 cut(s)	294
AoxI	GGCC	1 cut(s)	435
ApeKI	GCWGC	1 cut(s)	125
ArsI	GACNNNNNNTTYG	4 cut(s)	351, 378, 383, 410
AseI	ATTAAT	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	235, 435
AsuHPI	GGTGA	2 cut(s)	16, 58
AsuII	TTCGAA	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	335
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	2 cut(s)	137, 371
BceAI	ACGGC	2 cut(s)	422, 628
BciT130I	CCWGG	2 cut(s)	333, 488
BciVI	GTATCC	2 cut(s)	59, 278
BcoDI	GTCTC	3 cut(s)	289, 348, 472
BfmI	CTRYAG	1 cut(s)	102
BfuI	GTATCC	2 cut(s)	59, 278
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	333, 488
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	235, 435
BmiI	GGNNCC	2 cut(s)	337, 421
BmrFI	CCNGG	2 cut(s)	333, 488
BpmI	CTGGAG	1 cut(s)	271
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	633
Bsa29I	ATCGAT	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse3DI	GCAATG	2 cut(s)	120, 151
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	333, 488
BseCI	ATCGAT	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	382
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	2 cut(s)	120, 151
BseMII	CTCAG	3 cut(s)	252, 467, 615
BseXI	GCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	437
BshNI	GGYRCC	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	3 cut(s)	289, 348, 472
BsnI	GGCC	1 cut(s)	437
Bso31I	GGTCTC	1 cut(s)	472
Bsp119I	TTCGAA	1 cut(s)	633
Bsp143I	GATC	6 cut(s)	22, 54, 117, 187, 445, 465
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	3 cut(s)	253, 468, 614
BspDI	ATCGAT	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	337, 421
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	3 cut(s)	195, 440, 460
BspT104I	TTCGAA	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	472
BsrDI	GCAATG	2 cut(s)	120, 151
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	6 cut(s)	22, 54, 117, 187, 445, 465
BssNI	GRCGYC	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	333, 488
Bst4CI	ACNGT	2 cut(s)	85, 697
BstACI	GRCGYC	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	4 cut(s)	142, 198, 210, 249
BstDEI	CTNAG	3 cut(s)	261, 476, 601
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	6 cut(s)	25, 57, 120, 190, 448, 468
BstMAI	GTCTC	3 cut(s)	289, 348, 472
BstMBI	GATC	6 cut(s)	22, 54, 117, 187, 445, 465
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	2 cut(s)	333, 488
BstSCI	CCNGG	2 cut(s)	331, 486
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	465
Bsu15I	ATCGAT	1 cut(s)	190
BsuI	GTATCC	2 cut(s)	59, 278
BsuRI	GGCC	1 cut(s)	437
BsuTUI	ATCGAT	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	90, 609
Cac8I	GCNNGC	4 cut(s)	142, 198, 210, 249
CaiI	CAGNNNCTG	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	235, 435
ClaI	ATCGAT	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	688, 706
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	1 cut(s)	35
CviQI	GTAC	2 cut(s)	688, 706
DdeI	CTNAG	3 cut(s)	261, 476, 601
DpnI	GATC	6 cut(s)	24, 56, 119, 189, 447, 467
DpnII	GATC	6 cut(s)	22, 54, 117, 187, 445, 465
DraIII	CACNNNGTG	1 cut(s)	604
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	472
Eco32I	GATATC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	331, 486
EcoRV	GATATC	1 cut(s)	78
FaeI	CATG	1 cut(s)	38
FaiI	YATR	7 cut(s)	14, 30, 36, 282, 426, 561, 609
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FatI	CATG	1 cut(s)	34
FblI	GTMKAC	2 cut(s)	218, 306
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	437
HapII	CCGG	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	38
HinfI	GANTC	1 cut(s)	654
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	2 cut(s)	16, 58
Hpy166II	GTNNAC	4 cut(s)	219, 307, 690, 700
Hpy188III	TCNNGA	2 cut(s)	151, 163
Hpy8I	GTNNAC	4 cut(s)	219, 307, 690, 700
Hpy99I	CGWCG	3 cut(s)	169, 371, 649
HpyAV	CCTTC	1 cut(s)	607
HpyCH4III	ACNGT	2 cut(s)	85, 697
HpyCH4IV	ACGT	3 cut(s)	69, 221, 228
HpyCH4V	TGCA	6 cut(s)	16, 97, 104, 125, 176, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	3 cut(s)	261, 476, 601
HpySE526I	ACGT	3 cut(s)	69, 221, 228
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	38
Kzo9I	GATC	6 cut(s)	22, 54, 117, 187, 445, 465
Lsp1109I	GCAGC	1 cut(s)	137
MaeII	ACGT	3 cut(s)	69, 221, 228
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	6 cut(s)	24, 56, 119, 189, 447, 467
MboI	GATC	6 cut(s)	22, 54, 117, 187, 445, 465
MboII	GAAGA	1 cut(s)	419
MflI	RGATCY	1 cut(s)	465
MluCI	AATT	2 cut(s)	567, 716
MlyI	GAGTC	1 cut(s)	663
MnlI	CCTC	7 cut(s)	250, 256, 328, 479, 492, 652, 719
MseI	TTAA	3 cut(s)	9, 399, 684
MslI	CAYNNNNRTG	1 cut(s)	695
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	333, 488
MvaI	CCWGG	2 cut(s)	333, 488
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	6 cut(s)	22, 54, 117, 187, 445, 465
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	2 cut(s)	337, 421
NmuCI	GTSAC	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	633
OliI	CACNNNNGTG	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	1 cut(s)	708
PflFI	GACNNNGTC	2 cut(s)	359, 542
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	331, 486
PspGI	CCWGG	2 cut(s)	331, 486
PspN4I	GGNNCC	2 cut(s)	337, 421
PspPI	GGNCC	2 cut(s)	235, 435
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	465
PsyI	GACNNNGTC	2 cut(s)	359, 542
RsaI	GTAC	2 cut(s)	689, 707
RsaNI	GTAC	2 cut(s)	688, 706
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	3 cut(s)	9, 399, 684
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	6 cut(s)	22, 54, 117, 187, 445, 465
Sau96I	GGNCC	2 cut(s)	235, 435
SchI	GAGTC	1 cut(s)	663
ScrFI	CCNGG	2 cut(s)	333, 488
SfcI	CTRYAG	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	633
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	695
Sse9I	AATT	2 cut(s)	567, 716
StyD4I	CCNGG	2 cut(s)	331, 486
TaaI	ACNGT	2 cut(s)	85, 697
TaiI	ACGT	3 cut(s)	72, 224, 231
TaqI	TCGA	6 cut(s)	80, 190, 633, 639, 657, 711
TasI	AATT	2 cut(s)	567, 716
TatI	WGTACW	1 cut(s)	687
Tru1I	TTAA	3 cut(s)	9, 399, 684
Tru9I	TTAA	3 cut(s)	9, 399, 684
TscAI	CASTG	2 cut(s)	90, 609
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	324
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	90, 609
Tth111I	GACNNNGTC	2 cut(s)	359, 542
VpaK11BI	GGWCC	1 cut(s)	235
VspI	ATTAAT	1 cut(s)	9
XmiI	GTMKAC	2 cut(s)	218, 306
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.