Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Reverse (-)

1729864 .. 1731612

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02340.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGTTGAGAAGAGCAAGATTTTGATAATCGGAAGCACAGGCTACATCGGAAAGTTTGTCGTTGAAGCGAGCGCGAAGCTCGGGCATCCGACCTTTGCTCTGGTTAGAGAGACCACAGTCAACGACCCTGCTAAGGCTAATCTCATTGAGAAGTTCAAGAACTTGGGTGTCACTTTGCTCTATGGAGATCTTTATAACCATGAGAGTTTGGTGAAGGCGATCAAACAGGTGGACGTTGTGATATCGACGGTGGGTTTCCTGCAAACTGCAGACCAAACCAAGATCATTGCAGCAATCAAAGAAGCTGGCAATATCAAGAGATTTTTCCCGTCGGAGTTTGGAAACGATGTGGACCGAGTGAAAGCAGTTGAGCCAGCCAAGTCTTCGTTTGACGCCAAGGTCCAAATCCGGCGTGTTATTGAGGCTGAGGGCATCCCCCACACTTATGTCTCCAGCAACTGCTTTGATGGCTACTTTCTGCCGTCATTGGCACAGCCAGGTGCCACTTCTCCACCCAGAGACAAAGTCACCATCTTAGGGGATGGAAATCCAAAAGCTGTCTTTAACAAGGAAGATGACATAGGAACCTATACAATCAGGGCCGTTGATGATCCAAGAACATTGAACAAGGTCCTCTTCCTGAAGCCTCCCCAGAACATCTACTCATTCAATGAGCTTGTTGCTCTGTGGGAGAAGAAGATTGGCAAAGTCCTTGAAAAAGTCTATGTCCCAGAGGACAAACTTCTCAAGGATATTGAAGCGGCCCCAATTCCAATCAATGTGATATTAGCAATCAACCACTCAGTGTTTGTGAACGGAGATCAGACCAAGTTCGAAATCGAGCCGTCATTTGGAGTCGAGGCTTATGAGCTCTACCCTGACGTGAAGTACACAACTGTGGACGAGTACCTCGATCGATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

309

Amino Acids

34.21

Weight (kDa)

5.72

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AasI	GACNNNNNNGTC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	500
AccII	CGCG	1 cut(s)	74
AciI	CCGC	1 cut(s)	761
AclWI	GGATC	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	662
AcyI	GRCGYC	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	805
AfaI	GTAC	2 cut(s)	890, 908
AfiI	CCNNNNNNNGG	3 cut(s)	133, 537, 851
AgsI	TTSAA	6 cut(s)	65, 157, 625, 670, 716, 758
AjiI	CACGTC	1 cut(s)	883
AjnI	CCWGG	1 cut(s)	496
AleI	CACNNNNGTG	1 cut(s)	896
AluBI	AGCT	5 cut(s)	79, 305, 557, 676, 871
AluI	AGCT	5 cut(s)	79, 305, 557, 676, 871
Alw21I	GWGCWC	1 cut(s)	873
Alw26I	GTCTC	3 cut(s)	104, 454, 513
AlwI	GGATC	1 cut(s)	605
AlwNI	CAGNNNCTG	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	600, 762
ApeKI	GCWGC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	5 cut(s)	352, 400, 600, 631, 763
AsuHPI	GGTGA	2 cut(s)	223, 520
AsuII	TTCGAA	1 cut(s)	834
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	3 cut(s)	352, 400, 631
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	873
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	873
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	3 cut(s)	461, 536, 539
BceAI	ACGGC	3 cut(s)	466, 587, 829
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	3 cut(s)	104, 454, 513
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	2 cut(s)	291, 762
BlsI	GCNGC	2 cut(s)	292, 763
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	3 cut(s)	352, 400, 631
BmeT110I	CYCGRG	1 cut(s)	80
BmgBI	CACGTC	1 cut(s)	883
BmgT120I	GGNCC	5 cut(s)	352, 400, 600, 631, 763
BmiI	GGNNCC	3 cut(s)	502, 586, 765
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	94, 441
BoxI	GACNNNNGTC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	436
Bpu10I	CCTNAGC	2 cut(s)	132, 426
Bpu14I	TTCGAA	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	731
Bsa29I	ATCGAT	1 cut(s)	916
BsaBI	GATNNNNATC	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 537, 851
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	916
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	3 cut(s)	85, 432, 547
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	3 cut(s)	133, 537, 851
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	417, 816
BseXI	GCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	916
BshFI	GGCC	2 cut(s)	602, 764
BshNI	GGYRCC	1 cut(s)	500
BshVI	ATCGAT	1 cut(s)	916
BsiEI	CGRYCG	1 cut(s)	916
BsiHKAI	GWGCWC	1 cut(s)	873
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	409
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	3 cut(s)	133, 537, 851
BsmAI	GTCTC	3 cut(s)	104, 454, 513
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	602, 764
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	80
Bsp119I	TTCGAA	1 cut(s)	834
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp143I	GATC	6 cut(s)	187, 219, 282, 610, 820, 913
BspACI	CCGC	1 cut(s)	761
BspANI	GGCC	2 cut(s)	602, 764
BspCNI	CTCAG	2 cut(s)	418, 815
BspDI	ATCGAT	1 cut(s)	916
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	3 cut(s)	502, 586, 765
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	605
BspQI	GCTCTTC	1 cut(s)	5
BspT104I	TTCGAA	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	6 cut(s)	187, 219, 282, 610, 820, 913
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	3 cut(s)	118, 250, 898
Bst6I	CTCTTC	2 cut(s)	5, 641
BstACI	GRCGYC	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	834
BstC8I	GCNNGC	3 cut(s)	70, 307, 375
BstDEI	CTNAG	4 cut(s)	132, 426, 535, 802
BstF5I	GGATG	3 cut(s)	85, 432, 547
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	6 cut(s)	190, 222, 285, 613, 823, 916
BstMAI	GTCTC	3 cut(s)	104, 454, 513
BstMBI	GATC	6 cut(s)	187, 219, 282, 610, 820, 913
BstMCI	CGRYCG	1 cut(s)	916
BstMWI	GCNNNNNNNGC	1 cut(s)	468
BstNI	CCWGG	1 cut(s)	498
BstPAI	GACNNNNGTC	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	916
BsuRI	GGCC	2 cut(s)	602, 764
BsuTUI	ATCGAT	1 cut(s)	916
BtrI	CACGTC	1 cut(s)	883
BtsCI	GGATG	3 cut(s)	85, 432, 547
BtsIMutI	CAGTG	1 cut(s)	810
Cac8I	GCNNGC	3 cut(s)	70, 307, 375
CaiI	CAGNNNCTG	1 cut(s)	459
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	5 cut(s)	352, 400, 600, 631, 763
ClaI	ATCGAT	1 cut(s)	916
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	889, 907
CviAII	CATG	1 cut(s)	200
CviQI	GTAC	2 cut(s)	889, 907
DdeI	CTNAG	4 cut(s)	132, 426, 535, 802
DpnI	GATC	6 cut(s)	189, 221, 284, 612, 822, 915
DpnII	GATC	6 cut(s)	187, 219, 282, 610, 820, 913
DraIII	CACNNNGTG	1 cut(s)	805
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	2 cut(s)	5, 641
EarI	CTCTTC	2 cut(s)	5, 641
Ecl136II	GAGCTC	1 cut(s)	871
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	873
Eco31I	GGTCTC	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	3 cut(s)	352, 400, 631
Eco53kI	GAGCTC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	662
Eco88I	CYCGRG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	871
EcoO109I	RGGNCCY	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	496
EcoRV	GATATC	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	1 cut(s)	203
FaiI	YATR	8 cut(s)	183, 195, 201, 447, 581, 591, 726, 867
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	291, 762
FokI	GGATG	3 cut(s)	72, 419, 554
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	2 cut(s)	291, 762
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	291, 762
GsuI	CTGGAG	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	602, 764
HapII	CCGG	1 cut(s)	409
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	855
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	2 cut(s)	223, 520
Hpy166II	GTNNAC	6 cut(s)	121, 232, 352, 814, 891, 901
Hpy188I	TCNGA	5 cut(s)	32, 50, 90, 334, 825
Hpy188III	TCNNGA	3 cut(s)	157, 316, 640
Hpy8I	GTNNAC	6 cut(s)	121, 232, 352, 814, 891, 901
Hpy99I	CGWCG	2 cut(s)	250, 334
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	3 cut(s)	118, 250, 898
HpyCH4IV	ACGT	2 cut(s)	234, 882
HpyCH4V	TGCA	3 cut(s)	262, 269, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	468
HpyF3I	CTNAG	4 cut(s)	132, 426, 535, 802
HpySE526I	ACGT	2 cut(s)	234, 882
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	6 cut(s)	187, 219, 282, 610, 820, 913
LguI	GCTCTTC	1 cut(s)	5
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	2 cut(s)	94, 441
MaeII	ACGT	2 cut(s)	234, 882
MaeIII	GTNAC	2 cut(s)	169, 526
MalI	GATC	6 cut(s)	189, 221, 284, 612, 822, 915
MboI	GATC	6 cut(s)	187, 219, 282, 610, 820, 913
MboII	GAAGA	6 cut(s)	22, 375, 584, 628, 706, 709
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	873
MluCI	AATT	1 cut(s)	768
MlyI	GAGTC	1 cut(s)	864
MmeI	TCCRAC	2 cut(s)	113, 312
MnlI	CCTC	7 cut(s)	415, 421, 644, 657, 727, 853, 920
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	2 cut(s)	444, 896
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	468
NdeII	GATC	6 cut(s)	187, 219, 282, 610, 820, 913
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	3 cut(s)	502, 586, 765
NmuCI	GTSAC	2 cut(s)	169, 526
NspV	TTCGAA	1 cut(s)	834
OliI	CACNNNNGTG	1 cut(s)	896
PciSI	GCTCTTC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	1 cut(s)	909
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	292, 763
Ple19I	CGATCG	1 cut(s)	916
PleI	GAGTC	1 cut(s)	863
PpsI	GAGTC	1 cut(s)	863
PpuMI	RGGWCCY	1 cut(s)	631
PshAI	GACNNNNGTC	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	873
Psp5II	RGGWCCY	1 cut(s)	631
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	3 cut(s)	502, 586, 765
PspPI	GGNCC	5 cut(s)	352, 400, 600, 631, 763
PspPPI	RGGWCCY	1 cut(s)	631
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	187
PsyI	GACNNNGTC	1 cut(s)	524
PvuI	CGATCG	1 cut(s)	916
RsaI	GTAC	2 cut(s)	890, 908
RsaNI	GTAC	2 cut(s)	889, 907
RseI	CAYNNNNRTG	2 cut(s)	444, 896
SacI	GAGCTC	1 cut(s)	873
SapI	GCTCTTC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	2 cut(s)	291, 762
Sau3AI	GATC	6 cut(s)	187, 219, 282, 610, 820, 913
Sau96I	GGNCC	5 cut(s)	352, 400, 600, 631, 763
SchI	GAGTC	1 cut(s)	864
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	1 cut(s)	873
SfaNI	GCATC	2 cut(s)	94, 441
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	834
SinI	GGWCC	3 cut(s)	352, 400, 631
SmiMI	CAYNNNNRTG	2 cut(s)	444, 896
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	1 cut(s)	768
SsiI	CCGC	1 cut(s)	761
SstI	GAGCTC	1 cut(s)	873
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	3 cut(s)	118, 250, 898
TaiI	ACGT	2 cut(s)	237, 885
TaqI	TCGA	6 cut(s)	245, 834, 840, 858, 912, 916
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	1 cut(s)	768
TatI	WGTACW	1 cut(s)	888
TauI	GCSGC	1 cut(s)	764
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	2 cut(s)	169, 526
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	2 cut(s)	169, 526
TspGWI	ACGGA	1 cut(s)	831
TspRI	CASTG	1 cut(s)	810
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	3 cut(s)	352, 400, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.