Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Forward (+)

60653750 .. 60656499

Gene Structure 2750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCTGATCCTCAGAAAAGCAAGATTTTGGTAATTGGAAGCACCGGCTACATCGGCAAGTTCATCGTTGAAGCGAGCGCAAAGGCTAATCATCCCACCTTTGCTCTTGTTAGGGAGACCACTGTCAATGACCCTGCCAAGGGAAAACTTATTCAAAATTTCAAGAACTTGGGAGTCACTTTGCTCTATGGAGATCTCAATGACAAGCACGAGAGTTTGGTGAAGGTGATCAAAAAGGTGGACGTGGTGATATCAACACTGGCTGGCAGGCCGCTACCAGATCAAACCAAGCTCATTGCCGCTATTAAAGCAGCTGGTAATGTCAAGAGATTCCTCCCCTCGGAGTTCGGAAATGATGTGGATCATGTAAAGGATGCAGTTGAGCCAGCCAAATCTGTAATTGAGAGCAAAGCCCAAATCCGGCGTGCTATAGAGGCCGAGGGGATTCCCTACACACATGTCTCCTGCAACTGCTTTGCAGGCTATTTTCTACCCACATTGGCACAGCCAGATGCCACTTCTCCACCTAGAGACAAAGAAGAGGACATTAGCACCTATACAATCCGAGCATTTGATGACCCAAGAACACTGAACGATCTCCACCTCAGGCCTCCCCGAAACATTTACTCCTTCAATGAACTCGTTGCCTTGTGGGAGAAGAAAATTGGCAAAGCCCTCGAGAAGGTCTATGTTCCAAAGGACAAACTCCTAAACGATATTATAGAGACCCCATTTCCCCAAAATGCGATATTGGCGATCGAACACTCTGTATTTGTGAAAGGAGATCAAACCAGCTTTGAGATTGAGCCGTCGATCGGAGTCGAAGCTTCCGAGCTATACTCCGATGTTGAATACACCACTATGGAGGACTACCTCGACCAATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

296

Amino Acids

32.87

Weight (kDa)

5.49

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 292	3.3e-87	NmrA-like family
Epimerase	PF01370	9 - 90	8.4e-07	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	13 - 155	4.8e-14	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	272, 300
AclWI	GGATC	2 cut(s)	2, 369
AcsI	RAATTY	1 cut(s)	157
AfiI	CCNNNNNNNGG	6 cut(s)	139, 140, 340, 420, 682, 815
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	5 cut(s)	71, 155, 163, 634, 851
AjiI	CACGTC	1 cut(s)	244
AluBI	AGCT	5 cut(s)	292, 314, 795, 827, 835
AluI	AGCT	5 cut(s)	292, 314, 795, 827, 835
Alw26I	GTCTC	4 cut(s)	110, 466, 525, 719
AlwI	GGATC	2 cut(s)	2, 369
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	3 cut(s)	269, 435, 608
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	80
AsuHPI	GGTGA	3 cut(s)	232, 238, 259
AvaI	CYCGRG	1 cut(s)	677
AxyI	CCTNAGG	1 cut(s)	605
BauI	CACGAG	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	793
BcgI	CGANNNNNNTGC	4 cut(s)	46, 80, 658, 692
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	4 cut(s)	110, 466, 525, 719
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	429
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	3 cut(s)	272, 300, 312
BlsI	GCNGC	3 cut(s)	273, 301, 313
BmeT110I	CYCGRG	1 cut(s)	677
BmgBI	CACGTC	1 cut(s)	244
BmsI	GCATC	2 cut(s)	364, 502
BoxI	GACNNNNGTC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	824, 856
BsaBI	GATNNNNATC	1 cut(s)	360
BsaI	GGTCTC	2 cut(s)	110, 719
BsaJI	CCNNGG	3 cut(s)	138, 339, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	6 cut(s)	139, 140, 340, 420, 682, 815
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	264
Bse21I	CCTNAGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	138, 339, 438
BseGI	GGATG	2 cut(s)	91, 379
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	6 cut(s)	139, 140, 340, 420, 682, 815
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	26, 619
BseNI	ACTGG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	323
Bsh1285I	CGRYCG	2 cut(s)	759, 816
BshFI	GGCC	3 cut(s)	271, 437, 610
BsiEI	CGRYCG	2 cut(s)	759, 816
BsiHKCI	CYCGRG	1 cut(s)	677
BsiSI	CCGG	2 cut(s)	45, 421
BslI	CCNNNNNNNGG	6 cut(s)	139, 140, 340, 420, 682, 815
BsmAI	GTCTC	4 cut(s)	110, 466, 525, 719
BsnI	GGCC	3 cut(s)	271, 437, 610
Bso31I	GGTCTC	2 cut(s)	110, 719
BsoBI	CYCGRG	1 cut(s)	677
Bsp143I	GATC	9 cut(s)	7, 193, 228, 280, 361, 595, 756, 784, 813
BspACI	CCGC	2 cut(s)	272, 300
BspANI	GGCC	3 cut(s)	271, 437, 610
BspCNI	CTCAG	2 cut(s)	25, 618
BspPI	GGATC	2 cut(s)	2, 369
BspTNI	GGTCTC	2 cut(s)	110, 719
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	138, 339, 438
BssMI	GATC	9 cut(s)	7, 193, 228, 280, 361, 595, 756, 784, 813
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	534
BstC8I	GCNNGC	6 cut(s)	76, 265, 269, 387, 426, 481
BstDEI	CTNAG	2 cut(s)	12, 605
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	2 cut(s)	91, 379
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	9 cut(s)	10, 196, 231, 283, 364, 598, 759, 787, 816
BstMAI	GTCTC	4 cut(s)	110, 466, 525, 719
BstMBI	GATC	9 cut(s)	7, 193, 228, 280, 361, 595, 756, 784, 813
BstMCI	CGRYCG	2 cut(s)	759, 816
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 308, 434, 480, 752
BstNSI	RCATGY	1 cut(s)	461
BstPAI	GACNNNNGTC	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	605
BsuRI	GGCC	3 cut(s)	271, 437, 610
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	91, 379
BtsIMutI	CAGTG	3 cut(s)	120, 257, 587
Cac8I	GCNNGC	6 cut(s)	76, 265, 269, 387, 426, 481
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	44
CviAII	CATG	2 cut(s)	365, 458
DdeI	CTNAG	2 cut(s)	12, 605
DpnI	GATC	9 cut(s)	9, 195, 230, 282, 363, 597, 758, 786, 815
DpnII	GATC	9 cut(s)	7, 193, 228, 280, 361, 595, 756, 784, 813
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	610
Eco31I	GGTCTC	2 cut(s)	110, 719
Eco32I	GATATC	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	677
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	368, 461
FaiI	YATR	9 cut(s)	189, 366, 431, 459, 558, 690, 722, 838, 863
FatI	CATG	2 cut(s)	364, 457
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	272, 300, 312
FokI	GGATG	2 cut(s)	78, 386
Fsp4HI	GCNGC	3 cut(s)	272, 300, 312
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	272, 300, 312
HaeIII	GGCC	3 cut(s)	271, 437, 610
HapII	CCGG	2 cut(s)	45, 421
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	368, 461
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	825
HinfI	GANTC	4 cut(s)	174, 330, 445, 819
HpaII	CCGG	2 cut(s)	45, 421
HphI	GGTGA	3 cut(s)	232, 238, 259
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	7 cut(s)	15, 343, 350, 566, 818, 832, 844
Hpy188III	TCNNGA	3 cut(s)	163, 325, 679
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	814
HpyAV	CCTTC	3 cut(s)	217, 640, 676
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	377, 468, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 308, 434, 480, 752
HpyF3I	CTNAG	2 cut(s)	12, 605
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	368, 461
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	9 cut(s)	7, 193, 228, 280, 361, 595, 756, 784, 813
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	2 cut(s)	364, 502
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	9 cut(s)	9, 195, 230, 282, 363, 597, 758, 786, 815
MboI	GATC	9 cut(s)	7, 193, 228, 280, 361, 595, 756, 784, 813
MboII	GAAGA	2 cut(s)	551, 670
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	5 cut(s)	33, 157, 399, 663, 881
MlyI	GAGTC	2 cut(s)	183, 828
MseI	TTAA	2 cut(s)	306, 889
MslI	CAYNNNNRTG	1 cut(s)	860
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	2 cut(s)	45, 421
MwoI	GCNNNNNNNGC	5 cut(s)	54, 308, 434, 480, 752
NdeII	GATC	9 cut(s)	7, 193, 228, 280, 361, 595, 756, 784, 813
NlaIII	CATG	2 cut(s)	368, 461
NmeAIII	GCCGAG	1 cut(s)	463
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	461
PaeR7I	CTCGAG	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	610
PciI	ACATGT	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	828
PfeI	GAWTC	2 cut(s)	330, 445
PkrI	GCNGC	3 cut(s)	273, 301, 313
Ple19I	CGATCG	2 cut(s)	759, 816
PleI	GAGTC	2 cut(s)	182, 827
PpsI	GAGTC	2 cut(s)	182, 827
PscI	ACATGT	1 cut(s)	457
PshAI	GACNNNNGTC	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	193
PvuI	CGATCG	2 cut(s)	759, 816
PvuII	CAGCTG	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	306, 889
SatI	GCNGC	3 cut(s)	272, 300, 312
Sau3AI	GATC	9 cut(s)	7, 193, 228, 280, 361, 595, 756, 784, 813
SchI	GAGTC	2 cut(s)	183, 828
SfaNI	GCATC	2 cut(s)	364, 502
SfcI	CTRYAG	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	677
SlaI	CTCGAG	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	860
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	33, 157, 399, 663, 881
SseBI	AGGCCT	1 cut(s)	610
SsiI	CCGC	2 cut(s)	272, 300
SspMI	CTAG	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	610
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	5 cut(s)	678, 759, 812, 822, 876
TasI	AATT	5 cut(s)	33, 157, 399, 663, 881
TauI	GCSGC	2 cut(s)	274, 302
TfiI	GAWTC	2 cut(s)	330, 445
Tru1I	TTAA	2 cut(s)	306, 889
Tru9I	TTAA	2 cut(s)	306, 889
TscAI	CASTG	3 cut(s)	127, 264, 594
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	52, 651
TspRI	CASTG	3 cut(s)	127, 264, 594
XagI	CCTNNNNNAGG	1 cut(s)	680
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	461
XhoI	CTCGAG	1 cut(s)	677
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.