Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Reverse (-)

1263503 .. 1265229

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCAGAAAAGAGTAAAATTTTGATCATCGGAGGCACTGGCTATATCGGAAAGTTTATCGTCGAAGCGAGCGCAAAGGCCGGCCATCCAACCTTTGCTCTAGTTAGAGAGAGCACGGTCAAAGACCCTGCCAAGGCTAACCTCATTGAGAAGTTTAAGAACTTGGGTGTCACTTTGCTCTACGGAGATCTTTATGACCATGAGAGTTTGGTGAAGGCGATCAAACAGGTGGATGTTGTGATATCGACCGTGGGTTTCATGCAAACTGCAGACCAAACCAAGATCATTGCTGCCATTAAAGAAGCTGGCAATATCAAGAGATTCTTCCCGTCGGAGTTTGGAAACGATGTGGATCGAGTGCATGCAGTTGAACCAGCCAAGTCTACGTTCGACCTCAAGGTCCAAATCCGGCGTGCTATTGAGGCCGAGGGCATCCCCTACACTTATGTCTCCAGCAACTGCTTTGCTGGCTACTTTCTGCCCTCATTGGCACAGCCAGGTGCCACTTCTCCACCCAGAGACAAAGTCACCATCTTAGGGGACGGAAATCCCAAAGCTGTGTTCAACAAGGAAGATGACATTGGAACCTATACGATCTGCGCCGTTGATGACCCAAGAACATTGAACAAGATCCTCTACCTGAAGCCTCCACAGAACATCTACTCCTTCAATGAGCTTGTTGCACTGTGGGAGAAGAAGATTGGCAAAGTTCTTGAAAAAGTCTACGTCCCAGAGGACAAACTTCTCAAGGATATTGCAGAGGCCCCAATCCCAATCAATGTGATATTAGCAATCAACCATTCAGTGTTTGTGAAGGGAGATCATACCAACTTCGAAATCGAGCCGTCCTTCGGAGTTGAGGCTTATGAGCTCTACCCTGATGTGAAGTACACCACCGTGGATGAGTACCTTGATCAATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

309

Amino Acids

34.12

Weight (kDa)

5.52

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	500
AccI	GTMKAC	2 cut(s)	383, 723
AclWI	GGATC	2 cut(s)	360, 625
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	662
AfaI	GTAC	2 cut(s)	890, 908
AfiI	CCNNNNNNNGG	3 cut(s)	133, 537, 851
AgsI	TTSAA	5 cut(s)	371, 565, 625, 670, 716
AjnI	CCWGG	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	6 cut(s)	371, 403, 545, 564, 577, 596
AleI	CACNNNNGTG	1 cut(s)	896
AloI	GAACNNNNNNTCC	2 cut(s)	647, 679
AluBI	AGCT	4 cut(s)	305, 557, 676, 871
AluI	AGCT	4 cut(s)	305, 557, 676, 871
Alw21I	GWGCWC	2 cut(s)	116, 873
Alw26I	GTCTC	2 cut(s)	454, 513
AlwI	GGATC	2 cut(s)	360, 625
AlwNI	CAGNNNCTG	1 cut(s)	459
AoxI	GGCC	4 cut(s)	78, 82, 423, 762
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	74, 602
AspS9I	GGNCC	2 cut(s)	400, 763
AsuHPI	GGTGA	2 cut(s)	223, 520
AsuII	TTCGAA	1 cut(s)	834
AvaII	GGWCC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	873
Bbv12I	GWGCWC	2 cut(s)	116, 873
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	2 cut(s)	93, 539
BceAI	ACGGC	2 cut(s)	587, 829
BciT130I	CCWGG	1 cut(s)	498
BclI	TGATCA	2 cut(s)	24, 913
BcoDI	GTCTC	2 cut(s)	454, 513
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	2 cut(s)	400, 763
BmiI	GGNNCC	3 cut(s)	502, 586, 765
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	436
Bpu14I	TTCGAA	1 cut(s)	834
BpuEI	CTTGAG	2 cut(s)	380, 731
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	4 cut(s)	132, 249, 426, 897
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 537, 851
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	4 cut(s)	132, 249, 426, 897
BseGI	GGATG	4 cut(s)	85, 238, 432, 907
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	3 cut(s)	133, 537, 851
BseMI	GCAATG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	4 cut(s)	80, 84, 425, 764
BshNI	GGYRCC	1 cut(s)	500
BsiEI	CGRYCG	1 cut(s)	249
BsiHKAI	GWGCWC	2 cut(s)	116, 873
BsiSI	CCGG	2 cut(s)	81, 409
BslFI	GGGAC	2 cut(s)	554, 713
BslI	CCNNNNNNNGG	3 cut(s)	133, 537, 851
BsmAI	GTCTC	2 cut(s)	454, 513
BsmFI	GGGAC	2 cut(s)	554, 713
BsnI	GGCC	4 cut(s)	80, 84, 425, 764
Bsp119I	TTCGAA	1 cut(s)	834
Bsp1286I	GDGCHC	2 cut(s)	116, 873
Bsp143I	GATC	9 cut(s)	24, 187, 219, 282, 352, 594, 630, 820, 913
BspANI	GGCC	4 cut(s)	80, 84, 425, 764
BspLI	GGNNCC	3 cut(s)	502, 586, 765
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	2 cut(s)	360, 625
BspT104I	TTCGAA	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	4 cut(s)	132, 249, 426, 897
BssMI	GATC	9 cut(s)	24, 187, 219, 282, 352, 594, 630, 820, 913
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	4 cut(s)	118, 250, 687, 898
BstBI	TTCGAA	1 cut(s)	834
BstC8I	GCNNGC	6 cut(s)	70, 82, 307, 363, 414, 469
BstDEI	CTNAG	1 cut(s)	535
BstDSI	CCRYGG	2 cut(s)	249, 897
BstF5I	GGATG	4 cut(s)	85, 238, 432, 907
BstHHI	GCGC	2 cut(s)	74, 602
BstKTI	GATC	9 cut(s)	27, 190, 222, 285, 355, 597, 633, 823, 916
BstMAI	GTCTC	2 cut(s)	454, 513
BstMBI	GATC	9 cut(s)	24, 187, 219, 282, 352, 594, 630, 820, 913
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 468
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	2 cut(s)	187, 630
BstYI	RGATCY	2 cut(s)	187, 630
BsuRI	GGCC	4 cut(s)	80, 84, 425, 764
BtgI	CCRYGG	2 cut(s)	249, 897
BtsCI	GGATG	4 cut(s)	85, 238, 432, 907
BtsIMutI	CAGTG	3 cut(s)	36, 683, 810
Cac8I	GCNNGC	6 cut(s)	70, 82, 307, 363, 414, 469
CaiI	CAGNNNCTG	1 cut(s)	459
CfoI	GCGC	2 cut(s)	74, 602
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	400, 763
Csp6I	GTAC	2 cut(s)	889, 907
CviAII	CATG	3 cut(s)	200, 259, 362
CviQI	GTAC	2 cut(s)	889, 907
DdeI	CTNAG	1 cut(s)	535
DpnI	GATC	9 cut(s)	26, 189, 221, 284, 354, 596, 632, 822, 915
DpnII	GATC	9 cut(s)	24, 187, 219, 282, 352, 594, 630, 820, 913
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	871
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	873
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	871
EcoO109I	RGGNCCY	1 cut(s)	763
EcoRII	CCWGG	1 cut(s)	496
EcoRV	GATATC	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	203, 262, 365
FaiI	YATR	9 cut(s)	45, 195, 201, 260, 363, 447, 591, 825, 867
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	2 cut(s)	554, 713
FatI	CATG	3 cut(s)	199, 258, 361
FbaI	TGATCA	2 cut(s)	24, 913
FblI	GTMKAC	2 cut(s)	383, 723
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	4 cut(s)	72, 245, 419, 914
FriOI	GRGCYC	1 cut(s)	873
FseI	GGCCGGCC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	2 cut(s)	73, 601
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	436
HaeIII	GGCC	4 cut(s)	80, 84, 425, 764
HapII	CCGG	2 cut(s)	81, 409
HhaI	GCGC	2 cut(s)	74, 602
Hin1II	CATG	3 cut(s)	203, 262, 365
Hin6I	GCGC	2 cut(s)	72, 600
HinP1I	GCGC	2 cut(s)	72, 600
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	2 cut(s)	81, 409
HphI	GGTGA	2 cut(s)	223, 520
Hpy166II	GTNNAC	3 cut(s)	384, 724, 891
Hpy188I	TCNGA	4 cut(s)	32, 50, 334, 854
Hpy188III	TCNNGA	2 cut(s)	316, 713
Hpy8I	GTNNAC	3 cut(s)	384, 724, 891
Hpy99I	CGWCG	2 cut(s)	65, 334
HpyAV	CCTTC	4 cut(s)	208, 676, 808, 859
HpyCH4III	ACNGT	4 cut(s)	118, 250, 687, 898
HpyCH4IV	ACGT	2 cut(s)	386, 726
HpyCH4V	TGCA	6 cut(s)	262, 269, 361, 365, 683, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 468
HpyF3I	CTNAG	1 cut(s)	535
HpySE526I	ACGT	2 cut(s)	386, 726
Hsp92II	CATG	3 cut(s)	203, 262, 365
HspAI	GCGC	2 cut(s)	72, 600
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Ksp22I	TGATCA	2 cut(s)	24, 913
Kzo9I	GATC	9 cut(s)	24, 187, 219, 282, 352, 594, 630, 820, 913
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	2 cut(s)	386, 726
MaeIII	GTNAC	2 cut(s)	169, 526
MalI	GATC	9 cut(s)	26, 189, 221, 284, 354, 596, 632, 822, 915
MboI	GATC	9 cut(s)	24, 187, 219, 282, 352, 594, 630, 820, 913
MboII	GAAGA	4 cut(s)	316, 584, 706, 709
MflI	RGATCY	2 cut(s)	187, 630
MhlI	GDGCHC	2 cut(s)	116, 873
MluCI	AATT	2 cut(s)	18, 917
MmeI	TCCRAC	2 cut(s)	113, 312
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	2 cut(s)	156, 297
MslI	CAYNNNNRTG	1 cut(s)	896
MspI	CCGG	2 cut(s)	81, 409
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	422, 468
NaeI	GCCGGC	1 cut(s)	82
NdeII	GATC	9 cut(s)	24, 187, 219, 282, 352, 594, 630, 820, 913
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	3 cut(s)	203, 262, 365
NlaIV	GGNNCC	3 cut(s)	502, 586, 765
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	2 cut(s)	169, 526
NspI	RCATGY	1 cut(s)	365
NspV	TTCGAA	1 cut(s)	834
OliI	CACNNNNGTG	1 cut(s)	896
PaeI	GCATGC	1 cut(s)	365
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	3 cut(s)	502, 586, 765
PspPI	GGNCC	2 cut(s)	400, 763
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	459
PsuI	RGATCY	2 cut(s)	187, 630
PsyI	GACNNNGTC	1 cut(s)	524
RigI	GGCCGGCC	1 cut(s)	84
RsaI	GTAC	2 cut(s)	890, 908
RsaNI	GTAC	2 cut(s)	889, 907
RseI	CAYNNNNRTG	1 cut(s)	896
SacI	GAGCTC	1 cut(s)	873
SaqAI	TTAA	2 cut(s)	156, 297
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	9 cut(s)	24, 187, 219, 282, 352, 594, 630, 820, 913
Sau96I	GGNCC	2 cut(s)	400, 763
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	2 cut(s)	116, 873
SfaNI	GCATC	1 cut(s)	441
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	834
SinI	GGWCC	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	2 cut(s)	395, 746
SmoI	CTYRAG	2 cut(s)	395, 746
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	18, 917
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	873
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	4 cut(s)	118, 250, 687, 898
TaiI	ACGT	2 cut(s)	389, 729
TaqI	TCGA	6 cut(s)	63, 245, 355, 390, 834, 840
TasI	AATT	2 cut(s)	18, 917
TatI	WGTACW	1 cut(s)	888
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	156, 297
Tru9I	TTAA	2 cut(s)	156, 297
TscAI	CASTG	3 cut(s)	43, 690, 810
TseFI	GTSAC	2 cut(s)	169, 526
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	2 cut(s)	169, 526
TspDTI	ATGAA	1 cut(s)	247
TspGWI	ACGGA	2 cut(s)	198, 558
TspRI	CASTG	3 cut(s)	43, 690, 810
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	2 cut(s)	383, 723
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.