Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013354.1

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Forward (+)

83402 .. 84897

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013354.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggctgatcctcaggaaagcaagattttggtaattggaggcaccggctacatcggcaagttcatcatcggagctagcgcaaaggctaaccatcctagctttgttcttgttggggaaaccaatatgccaagggaaaactcattcaaaatttcaagaacttgggtgtcagttgtcactggagatcttcatgatggacttgactgtttggcgaaggtgatcaaacaggtagacgtggtgatttcagctgtgaatcgcatgcagttagtagatcaaaccaagatcattgccgccattgaagaagccggctattttctacccacattggcacagccaggtgctacttctccaccaagagacaaagtcatcatcgtaggggatggaaatccaaaggcaatctttgtcaaggaagaggacatcagcacctacacaatccgagcagttgatgatccaagaacactgaacaaggtcctctacctcaagcctcccaaaaacatttactcattcaatgaactggttgccttgtgggagaagaaatttggcaaagccctcgggaaggtctatgttccagaggacaaactcctcaacgatattatagagaccccatttccccaaaatgtgatattggcgatcaaccactctgtgtttgtgaaaggagatcaaaccaacttcgagattgaatacacagctgtggaggactacctcgaccaatttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

238

Amino Acids

26.34

Weight (kDa)

5.31

Isoelectric Point (pI)

24.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	2 cut(s)	2, 440
AcsI	RAATTY	2 cut(s)	147, 533
AdeI	CACNNNGTG	1 cut(s)	640
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	5 cut(s)	145, 153, 296, 505, 677
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	331
AleI	CACNNNNGTG	1 cut(s)	686
AluBI	AGCT	4 cut(s)	74, 99, 245, 686
AluI	AGCT	4 cut(s)	74, 99, 245, 686
Alw26I	GTCTC	2 cut(s)	348, 590
AlwI	GGATC	2 cut(s)	2, 440
Ama87I	CYCGRG	1 cut(s)	548
ApoI	RAATTY	2 cut(s)	147, 533
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	2 cut(s)	226, 247
AsuNHI	GCTAGC	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	466
AxyI	CCTNAGG	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	41
BccI	CCATC	3 cut(s)	99, 185, 371
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	348, 590
BfaI	CTAG	2 cut(s)	75, 96
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	466
BmeT110I	CYCGRG	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	333
BmtI	GCTAGC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	128, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse118I	RCCGGY	2 cut(s)	44, 302
Bse1I	ACTGG	2 cut(s)	181, 516
Bse21I	CCTNAGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	128, 547
BseGI	GGATG	2 cut(s)	91, 382
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	181, 516
BseRI	GAGGAG	1 cut(s)	569
BshNI	GGYRCC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	45, 303
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	2 cut(s)	348, 590
Bso31I	GGTCTC	1 cut(s)	590
BsoBI	CYCGRG	1 cut(s)	548
Bsp143I	GATC	8 cut(s)	7, 181, 216, 268, 279, 445, 627, 655
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	2, 440
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	590
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	2 cut(s)	44, 302
BsrI	ACTGG	2 cut(s)	181, 516
BssAI	RCCGGY	2 cut(s)	44, 302
BssECI	CCNNGG	2 cut(s)	128, 547
BssMI	GATC	8 cut(s)	7, 181, 216, 268, 279, 445, 627, 655
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	3 cut(s)	76, 257, 304
BstDEI	CTNAG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	2 cut(s)	91, 382
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	8 cut(s)	10, 184, 219, 271, 282, 448, 630, 658
BstMAI	GTCTC	2 cut(s)	348, 590
BstMBI	GATC	8 cut(s)	7, 181, 216, 268, 279, 445, 627, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	12
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	91, 382
BtsIMutI	CAGTG	2 cut(s)	174, 455
Cac8I	GCNNGC	3 cut(s)	76, 257, 304
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	2 cut(s)	44, 302
Cfr13I	GGNCC	1 cut(s)	466
CviAII	CATG	2 cut(s)	188, 256
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	8 cut(s)	9, 183, 218, 270, 281, 447, 629, 657
DpnII	GATC	8 cut(s)	7, 181, 216, 268, 279, 445, 627, 655
DraIII	CACNNNGTG	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	590
Eco47I	GGWCC	1 cut(s)	466
Eco81I	CCTNAGG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	548
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	2 cut(s)	191, 259
FaiI	YATR	5 cut(s)	125, 189, 257, 561, 593
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FatI	CATG	2 cut(s)	187, 255
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	2 cut(s)	78, 389
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	75, 96
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	198
HapII	CCGG	2 cut(s)	45, 303
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	191, 259
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	2 cut(s)	45, 303
HphI	GGTGA	2 cut(s)	226, 247
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	71, 434
Hpy188III	TCNNGA	6 cut(s)	14, 153, 188, 550, 566, 670
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	205, 547
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	191, 259
HspAI	GCGC	1 cut(s)	78
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	8 cut(s)	7, 181, 216, 268, 279, 445, 627, 655
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	58, 162, 209, 316, 318, 345, 497, 579
MaeI	CTAG	2 cut(s)	75, 96
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	8 cut(s)	9, 183, 218, 270, 281, 447, 629, 657
MboI	GATC	8 cut(s)	7, 181, 216, 268, 279, 445, 627, 655
MboII	GAAGA	4 cut(s)	176, 308, 419, 541
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	4 cut(s)	33, 147, 533, 707
MroNI	GCCGGC	1 cut(s)	302
MseI	TTAA	1 cut(s)	715
MslI	CAYNNNNRTG	1 cut(s)	686
MspA1I	CMGCKG	2 cut(s)	245, 686
MspI	CCGG	2 cut(s)	45, 303
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	54
NaeI	GCCGGC	1 cut(s)	304
NdeII	GATC	8 cut(s)	7, 181, 216, 268, 279, 445, 627, 655
NgoMIV	GCCGGC	1 cut(s)	302
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	191, 259
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	686
PaeI	GCATGC	1 cut(s)	259
PagI	TCATGA	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	250
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	466
PspPPI	RGGWCCY	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	2 cut(s)	245, 686
RseI	CAYNNNNRTG	1 cut(s)	686
SaqAI	TTAA	1 cut(s)	715
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	8 cut(s)	7, 181, 216, 268, 279, 445, 627, 655
Sau96I	GGNCC	1 cut(s)	466
ScrFI	CCNGG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	4 cut(s)	33, 147, 533, 707
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	2 cut(s)	75, 96
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	669, 702
TasI	AATT	4 cut(s)	33, 147, 533, 707
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	715
Tru9I	TTAA	1 cut(s)	715
TscAI	CASTG	2 cut(s)	181, 462
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	52, 176, 522
TspRI	CASTG	2 cut(s)	181, 462
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	466
XagI	CCTNNNNNAGG	1 cut(s)	551
XapI	RAATTY	2 cut(s)	147, 533
XceI	RCATGY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	2 cut(s)	75, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.