Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003310

Physical Location & Seq

Genomic Coordinates Forward (+)

60032724 .. 60035138

Gene Structure 2415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG416700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTGATCCTCAGAAAAGCAAGATTTTGGTAATTGGAGGCACCGGCTACATCGGCAAGTTCATCATCGAAGCGAGCACAAAGGCTAACCATCCTAGCTTTGTTCTTGTTAGGGAAACCAATGTGCCAAGGGAAAACTCATTCAAAATTTCAAGAACTTGGGTGTCAGTTGTCACTGGAGATCTTCATGATGGACATGACTGTTTGGCGAAGGTGATCAAACAAGTAGACGTGGTGATTTTAGCTGTGAATCGCATGCAGTTAGTAGATCAAACCAAGATCATTGCCGCCATTAAAGAAGCCAGTAATGTCAAGAGATTCTTCCCCTCGGAGTTTGGAAATGATGCTGATCGTGTTCATGCAGTTGAGCTAGCCAAATCTGCATTTGCGACCAAAGCGCAATTCCGGCGTGCCATAGAGGGGATACCCTACACATATGTCTCGAGCAACTGCTTTGCAGGCTATTTTCTACCCACATTGGCACAGCCAGGTGCTACTTCTCCACCAAGAGACAAAGTCATCATCGTAGGGGATAGAAATCCAAAGGCAATCTTTGTCAAGGAAGAGGACATCGGCACCTACACAATCCGAGCAGTTGATGACCCAAGAACACTGAACAAGGTCCTCTACCTCAAGCCTCCCAAAAACATTTACTCATTCAATGAACTGGTTGCCTTGTGGGAGAAGAAATTTGGCAAAGCCCTCGGGAAGGTCTATGTTCCAGAGGACAAACTCCTCAACGATATTATAGAGACCCCATTTCCCCAAAATGTGATATTGGCGATCAACCACTCTGTGTTTGTGAAAGGAGATCAAACCAACTTCGAGATTGAACCATCGTTCGGAGTCGAAGCTTCCGAGCTATACCCGGATGTTGAATACACAACTGTGGAGGACTACCTCGACCAATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

305

Amino Acids

34.07

Weight (kDa)

6.25

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 301	1e-84	NmrA-like family
Epimerase	PF01370	9 - 84	2.2e-06	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	13 - 114	4.9e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75280 AT1G75290 AT1G75290
fragaria_vesca	FvH4_2g39610 FvH4_2g39620
malus_domestica	MD08G1029400.v1.1 MD08G1029500.v1.1 MD08G1029600.v1.1 MD15G1024900.v1.1
prunus_persica	Prupe.1G377300_v2.0.a1
pyrus_communis	pycom08g02330 pycom08g02340 pycom08g02350 pycom15g02140
rosa_chinensis	RchiOBHm_Chr6g0301281 RchiOBHm_Chr6g0301291 RchiOBHm_Chr6g0301301
rosa_laevigata	RLG00000011261 RLG00000011263 RLG00000011264
rosa_multiflora	Rmu_sc0003197.1_g000006 Rmu_sc0013354.1_g000016 Rmu_sc0013354.1_g000018 Rmu_sc0013587.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166960
rosa_rugosa	Rorug06G0303000 Rorug06G0303200
rosa_samantha	Rh6AG416700 Rh6AG416900 Rh6AG417000 Rh6BG423300 Rh6BG423600 Rh6DG416500 Rh6DG416700
rosa_wichuraiana	Rw6G036070 Rw6G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	41, 575
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	2
AcsI	RAATTY	2 cut(s)	147, 689
AdeI	CACNNNGTG	1 cut(s)	796
AfiI	CCNNNNNNNGG	3 cut(s)	420, 709, 842
AgsI	TTSAA	5 cut(s)	145, 153, 661, 833, 878
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	487
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AleI	CACNNNNGTG	1 cut(s)	887
AluBI	AGCT	5 cut(s)	99, 245, 370, 854, 862
AluI	AGCT	5 cut(s)	99, 245, 370, 854, 862
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	3 cut(s)	445, 504, 746
AlwI	GGATC	1 cut(s)	2
Ama87I	CYCGRG	2 cut(s)	442, 704
ApoI	RAATTY	2 cut(s)	147, 689
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	622
AsuC2I	CCSGG	1 cut(s)	869
AsuHPI	GGTGA	2 cut(s)	226, 247
AsuNHI	GCTAGC	1 cut(s)	370
AvaI	CYCGRG	2 cut(s)	442, 704
AvaII	GGWCC	1 cut(s)	622
BanI	GGYRCC	2 cut(s)	41, 575
Bbv12I	GWGCWC	1 cut(s)	80
BccI	CCATC	3 cut(s)	99, 185, 844
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciT130I	CCWGG	1 cut(s)	489
BciVI	GTATCC	1 cut(s)	417
BclI	TGATCA	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	869
BcoDI	GTCTC	3 cut(s)	445, 504, 746
BfaI	CTAG	2 cut(s)	96, 371
BfuI	GTATCC	1 cut(s)	417
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	489, 869
Bme18I	GGWCC	1 cut(s)	622
BmeT110I	CYCGRG	2 cut(s)	442, 704
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	2 cut(s)	43, 577
BmrFI	CCNGG	2 cut(s)	489, 869
BmsI	GCATC	1 cut(s)	334
BmtI	GCTAGC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	869
BsaBI	GATNNNNATC	2 cut(s)	348, 537
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	3 cut(s)	128, 327, 703
Bsc4I	CCNNNNNNNGG	3 cut(s)	420, 709, 842
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	3 cut(s)	181, 303, 672
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	2 cut(s)	348, 537
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	3 cut(s)	128, 327, 703
BseGI	GGATG	2 cut(s)	91, 877
BseJI	GATNNNNATC	2 cut(s)	348, 537
BseLI	CCNNNNNNNGG	3 cut(s)	420, 709, 842
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	3 cut(s)	181, 303, 672
BseRI	GAGGAG	1 cut(s)	725
BshNI	GGYRCC	2 cut(s)	41, 575
BsiHKAI	GWGCWC	1 cut(s)	80
BsiHKCI	CYCGRG	2 cut(s)	442, 704
BsiSI	CCGG	3 cut(s)	45, 406, 869
BslI	CCNNNNNNNGG	3 cut(s)	420, 709, 842
BsmAI	GTCTC	3 cut(s)	445, 504, 746
Bso31I	GGTCTC	1 cut(s)	746
BsoBI	CYCGRG	2 cut(s)	442, 704
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	8 cut(s)	7, 181, 216, 268, 279, 349, 783, 811
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	43, 577
BspOI	GCTAGC	1 cut(s)	374
BspPI	GGATC	1 cut(s)	2
BspT107I	GGYRCC	2 cut(s)	41, 575
BspTNI	GGTCTC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	3 cut(s)	181, 303, 672
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	128, 327, 703
BssMI	GATC	8 cut(s)	7, 181, 216, 268, 279, 349, 783, 811
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	2 cut(s)	203, 889
Bst6I	CTCTTC	1 cut(s)	558
BstC8I	GCNNGC	5 cut(s)	76, 257, 372, 411, 460
BstDEI	CTNAG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	707
BstF5I	GGATG	2 cut(s)	91, 877
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	8 cut(s)	10, 184, 219, 271, 282, 352, 786, 814
BstMAI	GTCTC	3 cut(s)	445, 504, 746
BstMBI	GATC	8 cut(s)	7, 181, 216, 268, 279, 349, 783, 811
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 380, 395, 406, 459
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	487, 867
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	417
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	91, 877
BtsIMutI	CAGTG	2 cut(s)	174, 611
Cac8I	GCNNGC	5 cut(s)	76, 257, 372, 411, 460
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	622
CviAII	CATG	4 cut(s)	188, 197, 256, 359
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	8 cut(s)	9, 183, 218, 270, 281, 351, 785, 813
DpnII	GATC	8 cut(s)	7, 181, 216, 268, 279, 349, 783, 811
DraIII	CACNNNGTG	1 cut(s)	796
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	746
Eco47I	GGWCC	1 cut(s)	622
Eco88I	CYCGRG	2 cut(s)	442, 704
EcoNI	CCTNNNNNAGG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	4 cut(s)	191, 200, 259, 362
FalI	AAGNNNNNCTT	4 cut(s)	305, 337, 536, 568
FatI	CATG	4 cut(s)	187, 196, 255, 358
FauNDI	CATATG	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	2 cut(s)	78, 884
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	96, 371
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	198
HapII	CCGG	3 cut(s)	45, 406, 869
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	4 cut(s)	191, 200, 259, 362
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HindIII	AAGCTT	1 cut(s)	852
HinfI	GANTC	3 cut(s)	250, 318, 846
HpaII	CCGG	3 cut(s)	45, 406, 869
HphI	GGTGA	2 cut(s)	226, 247
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	5 cut(s)	15, 331, 590, 845, 859
Hpy188III	TCNNGA	7 cut(s)	153, 188, 313, 442, 706, 722, 826
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	205, 703
HpyCH4III	ACNGT	2 cut(s)	203, 889
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	259, 362, 383, 458
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 380, 395, 406, 459
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	191, 200, 259, 362
HspAI	GCGC	1 cut(s)	398
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	8 cut(s)	7, 181, 216, 268, 279, 349, 783, 811
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	96, 371
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	8 cut(s)	9, 183, 218, 270, 281, 351, 785, 813
MboI	GATC	8 cut(s)	7, 181, 216, 268, 279, 349, 783, 811
MboII	GAAGA	4 cut(s)	176, 313, 575, 697
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	5 cut(s)	33, 147, 401, 689, 908
MlyI	GAGTC	1 cut(s)	855
MseI	TTAA	2 cut(s)	294, 916
MslI	CAYNNNNRTG	1 cut(s)	887
MspI	CCGG	3 cut(s)	45, 406, 869
MspR9I	CCNGG	2 cut(s)	489, 869
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	5 cut(s)	54, 380, 395, 406, 459
NciI	CCSGG	1 cut(s)	869
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	8 cut(s)	7, 181, 216, 268, 279, 349, 783, 811
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	4 cut(s)	191, 200, 259, 362
NlaIV	GGNNCC	2 cut(s)	43, 577
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	887
PaeI	GCATGC	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	442
PagI	TCATGA	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	250, 318
PflFI	GACNNNGTC	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	854
PpsI	GAGTC	1 cut(s)	854
PpuMI	RGGWCCY	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	2 cut(s)	43, 577
PspPI	GGNCC	1 cut(s)	622
PspPPI	RGGWCCY	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	887
SaqAI	TTAA	2 cut(s)	294, 916
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	8 cut(s)	7, 181, 216, 268, 279, 349, 783, 811
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	1 cut(s)	855
ScrFI	CCNGG	2 cut(s)	489, 869
SduI	GDGCHC	1 cut(s)	80
SfaNI	GCATC	1 cut(s)	334
Sfr274I	CTCGAG	1 cut(s)	442
SinI	GGWCC	1 cut(s)	622
SlaI	CTCGAG	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	2 cut(s)	442, 632
SmoI	CTYRAG	2 cut(s)	442, 632
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	5 cut(s)	33, 147, 401, 689, 908
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	2 cut(s)	96, 371
StyD4I	CCNGG	2 cut(s)	487, 867
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	203, 889
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	5 cut(s)	69, 443, 825, 849, 903
TasI	AATT	5 cut(s)	33, 147, 401, 689, 908
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	250, 318
Tru1I	TTAA	2 cut(s)	294, 916
Tru9I	TTAA	2 cut(s)	294, 916
TscAI	CASTG	2 cut(s)	181, 618
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	52, 176, 347, 678
TspRI	CASTG	2 cut(s)	181, 618
Tth111I	GACNNNGTC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	622
XagI	CCTNNNNNAGG	1 cut(s)	707
XapI	RAATTY	2 cut(s)	147, 689
XceI	RCATGY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	2 cut(s)	96, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.